Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07375

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07380 and HMPREF1058_RS07375 are separated by 2 nucleotidesHMPREF1058_RS07375 and HMPREF1058_RS07370 are separated by 174 nucleotides HMPREF1058_RS07380: HMPREF1058_RS07380 - GH92 family glycosyl hydrolase, at 245,825 to 248,077 _RS07380 HMPREF1058_RS07375: HMPREF1058_RS07375 - DUF4982 domain-containing protein, at 248,080 to 250,584 _RS07375 HMPREF1058_RS07370: HMPREF1058_RS07370 - N-acetylglucosamine-6-phosphate deacetylase, at 250,759 to 251,922 _RS07370 Position (kb) 248 249 250 251Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 247.172 kb on + strand, within HMPREF1058_RS07380at 247.173 kb on - strand, within HMPREF1058_RS07380at 247.184 kb on + strand, within HMPREF1058_RS07380at 247.185 kb on - strand, within HMPREF1058_RS07380at 247.241 kb on + strand, within HMPREF1058_RS07380at 247.241 kb on + strand, within HMPREF1058_RS07380at 247.242 kb on - strand, within HMPREF1058_RS07380at 247.242 kb on - strand, within HMPREF1058_RS07380at 247.243 kb on + strand, within HMPREF1058_RS07380at 247.243 kb on + strand, within HMPREF1058_RS07380at 247.244 kb on - strand, within HMPREF1058_RS07380at 247.244 kb on - strand, within HMPREF1058_RS07380at 247.282 kb on + strand, within HMPREF1058_RS07380at 247.350 kb on + strand, within HMPREF1058_RS07380at 247.412 kb on - strand, within HMPREF1058_RS07380at 247.445 kb on - strand, within HMPREF1058_RS07380at 247.536 kb on - strand, within HMPREF1058_RS07380at 247.738 kb on + strand, within HMPREF1058_RS07380at 247.808 kb on - strand, within HMPREF1058_RS07380at 247.858 kb on + strandat 247.858 kb on + strandat 247.959 kb on - strandat 247.959 kb on - strandat 247.960 kb on + strandat 247.961 kb on - strandat 247.961 kb on - strandat 248.047 kb on + strandat 248.048 kb on - strandat 248.049 kb on + strandat 248.079 kb on + strandat 248.080 kb on - strandat 248.080 kb on - strandat 248.080 kb on - strandat 248.151 kb on - strandat 248.226 kb on + strandat 248.227 kb on - strandat 248.235 kb on + strandat 248.235 kb on + strandat 248.275 kb on + strandat 248.362 kb on - strand, within HMPREF1058_RS07375at 248.451 kb on - strand, within HMPREF1058_RS07375at 248.533 kb on + strand, within HMPREF1058_RS07375at 248.534 kb on - strand, within HMPREF1058_RS07375at 248.670 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.696 kb on - strand, within HMPREF1058_RS07375at 248.696 kb on - strand, within HMPREF1058_RS07375at 248.696 kb on - strand, within HMPREF1058_RS07375at 248.701 kb on - strand, within HMPREF1058_RS07375at 248.772 kb on + strand, within HMPREF1058_RS07375at 248.772 kb on + strand, within HMPREF1058_RS07375at 248.791 kb on - strand, within HMPREF1058_RS07375at 248.954 kb on - strand, within HMPREF1058_RS07375at 248.964 kb on + strand, within HMPREF1058_RS07375at 248.982 kb on + strand, within HMPREF1058_RS07375at 248.982 kb on + strand, within HMPREF1058_RS07375at 248.983 kb on - strand, within HMPREF1058_RS07375at 248.983 kb on - strand, within HMPREF1058_RS07375at 248.983 kb on - strand, within HMPREF1058_RS07375at 249.068 kb on + strand, within HMPREF1058_RS07375at 249.107 kb on + strand, within HMPREF1058_RS07375at 249.171 kb on + strand, within HMPREF1058_RS07375at 249.180 kb on + strand, within HMPREF1058_RS07375at 249.183 kb on + strand, within HMPREF1058_RS07375at 249.364 kb on - strand, within HMPREF1058_RS07375at 249.364 kb on - strand, within HMPREF1058_RS07375at 249.442 kb on - strand, within HMPREF1058_RS07375at 249.442 kb on - strand, within HMPREF1058_RS07375at 249.517 kb on - strand, within HMPREF1058_RS07375at 249.517 kb on - strand, within HMPREF1058_RS07375at 249.605 kb on + strand, within HMPREF1058_RS07375at 249.610 kb on - strand, within HMPREF1058_RS07375at 249.682 kb on + strand, within HMPREF1058_RS07375at 249.795 kb on - strand, within HMPREF1058_RS07375at 249.833 kb on - strand, within HMPREF1058_RS07375at 249.833 kb on - strand, within HMPREF1058_RS07375at 249.835 kb on + strand, within HMPREF1058_RS07375at 249.837 kb on + strand, within HMPREF1058_RS07375at 249.908 kb on - strand, within HMPREF1058_RS07375at 250.082 kb on + strand, within HMPREF1058_RS07375at 250.095 kb on + strand, within HMPREF1058_RS07375at 250.113 kb on + strand, within HMPREF1058_RS07375at 250.115 kb on + strand, within HMPREF1058_RS07375at 250.115 kb on + strand, within HMPREF1058_RS07375at 250.382 kb on - strandat 250.503 kb on + strandat 250.752 kb on + strandat 250.839 kb on + strandat 250.855 kb on - strandat 250.868 kb on + strandat 250.869 kb on - strandat 250.905 kb on + strand, within HMPREF1058_RS07370at 250.906 kb on - strand, within HMPREF1058_RS07370at 250.909 kb on + strand, within HMPREF1058_RS07370at 250.909 kb on + strand, within HMPREF1058_RS07370at 250.909 kb on + strand, within HMPREF1058_RS07370at 250.993 kb on - strand, within HMPREF1058_RS07370at 251.026 kb on - strand, within HMPREF1058_RS07370at 251.149 kb on + strand, within HMPREF1058_RS07370at 251.155 kb on - strand, within HMPREF1058_RS07370at 251.157 kb on + strand, within HMPREF1058_RS07370at 251.158 kb on - strand, within HMPREF1058_RS07370at 251.216 kb on - strand, within HMPREF1058_RS07370at 251.217 kb on + strand, within HMPREF1058_RS07370at 251.218 kb on - strand, within HMPREF1058_RS07370at 251.228 kb on + strand, within HMPREF1058_RS07370at 251.244 kb on + strand, within HMPREF1058_RS07370at 251.244 kb on + strand, within HMPREF1058_RS07370at 251.299 kb on + strand, within HMPREF1058_RS07370at 251.299 kb on + strand, within HMPREF1058_RS07370at 251.300 kb on - strand, within HMPREF1058_RS07370at 251.301 kb on + strand, within HMPREF1058_RS07370at 251.338 kb on - strand, within HMPREF1058_RS07370at 251.338 kb on - strand, within HMPREF1058_RS07370at 251.404 kb on + strand, within HMPREF1058_RS07370at 251.446 kb on + strand, within HMPREF1058_RS07370at 251.447 kb on - strand, within HMPREF1058_RS07370at 251.447 kb on - strand, within HMPREF1058_RS07370at 251.454 kb on + strand, within HMPREF1058_RS07370at 251.455 kb on - strand, within HMPREF1058_RS07370at 251.466 kb on + strand, within HMPREF1058_RS07370at 251.543 kb on + strand, within HMPREF1058_RS07370at 251.544 kb on - strand, within HMPREF1058_RS07370at 251.544 kb on - strand, within HMPREF1058_RS07370at 251.546 kb on - strand, within HMPREF1058_RS07370

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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247,172 + HMPREF1058_RS07380 0.60 +1.1
247,173 - HMPREF1058_RS07380 0.60 -0.9
247,184 + HMPREF1058_RS07380 0.60 -0.6
247,185 - HMPREF1058_RS07380 0.60 +1.5
247,241 + HMPREF1058_RS07380 0.63 +0.6
247,241 + HMPREF1058_RS07380 0.63 +0.8
247,242 - HMPREF1058_RS07380 0.63 -0.4
247,242 - HMPREF1058_RS07380 0.63 -1.8
247,243 + HMPREF1058_RS07380 0.63 +1.1
247,243 + HMPREF1058_RS07380 0.63 +0.2
247,244 - HMPREF1058_RS07380 0.63 -0.6
247,244 - HMPREF1058_RS07380 0.63 -2.5
247,282 + HMPREF1058_RS07380 0.65 +0.3
247,350 + HMPREF1058_RS07380 0.68 +2.5
247,412 - HMPREF1058_RS07380 0.70 -0.9
247,445 - HMPREF1058_RS07380 0.72 -2.9
247,536 - HMPREF1058_RS07380 0.76 -3.0
247,738 + HMPREF1058_RS07380 0.85 +2.5
247,808 - HMPREF1058_RS07380 0.88 -3.5
247,858 + +2.7
247,858 + +0.3
247,959 - +0.2
247,959 - +0.6
247,960 + +0.5
247,961 - -1.5
247,961 - -0.4
248,047 + -1.2
248,048 - -1.2
248,049 + -0.9
248,079 + -1.0
248,080 - -2.2
248,080 - -1.4
248,080 - -3.3
248,151 - -2.2
248,226 + -2.2
248,227 - -0.2
248,235 + -0.7
248,235 + -2.2
248,275 + -1.4
248,362 - HMPREF1058_RS07375 0.11 +0.6
248,451 - HMPREF1058_RS07375 0.15 -0.6
248,533 + HMPREF1058_RS07375 0.18 -1.3
248,534 - HMPREF1058_RS07375 0.18 +0.3
248,670 + HMPREF1058_RS07375 0.24 +0.1
248,695 + HMPREF1058_RS07375 0.25 -0.7
248,695 + HMPREF1058_RS07375 0.25 -0.6
248,695 + HMPREF1058_RS07375 0.25 -0.8
248,695 + HMPREF1058_RS07375 0.25 -2.8
248,696 - HMPREF1058_RS07375 0.25 +1.0
248,696 - HMPREF1058_RS07375 0.25 -0.9
248,696 - HMPREF1058_RS07375 0.25 +0.1
248,701 - HMPREF1058_RS07375 0.25 -0.8
248,772 + HMPREF1058_RS07375 0.28 +0.1
248,772 + HMPREF1058_RS07375 0.28 -2.8
248,791 - HMPREF1058_RS07375 0.28 -0.8
248,954 - HMPREF1058_RS07375 0.35 -0.8
248,964 + HMPREF1058_RS07375 0.35 -0.5
248,982 + HMPREF1058_RS07375 0.36 -2.3
248,982 + HMPREF1058_RS07375 0.36 +0.4
248,983 - HMPREF1058_RS07375 0.36 -1.4
248,983 - HMPREF1058_RS07375 0.36 -1.4
248,983 - HMPREF1058_RS07375 0.36 +0.1
249,068 + HMPREF1058_RS07375 0.39 -0.9
249,107 + HMPREF1058_RS07375 0.41 -1.2
249,171 + HMPREF1058_RS07375 0.44 -1.5
249,180 + HMPREF1058_RS07375 0.44 -0.6
249,183 + HMPREF1058_RS07375 0.44 +2.2
249,364 - HMPREF1058_RS07375 0.51 -2.8
249,364 - HMPREF1058_RS07375 0.51 -1.0
249,442 - HMPREF1058_RS07375 0.54 -3.1
249,442 - HMPREF1058_RS07375 0.54 -1.0
249,517 - HMPREF1058_RS07375 0.57 -1.7
249,517 - HMPREF1058_RS07375 0.57 -1.2
249,605 + HMPREF1058_RS07375 0.61 -0.0
249,610 - HMPREF1058_RS07375 0.61 -4.1
249,682 + HMPREF1058_RS07375 0.64 -1.9
249,795 - HMPREF1058_RS07375 0.68 -0.8
249,833 - HMPREF1058_RS07375 0.70 -3.7
249,833 - HMPREF1058_RS07375 0.70 -2.1
249,835 + HMPREF1058_RS07375 0.70 -0.9
249,837 + HMPREF1058_RS07375 0.70 -1.0
249,908 - HMPREF1058_RS07375 0.73 -1.4
250,082 + HMPREF1058_RS07375 0.80 -0.9
250,095 + HMPREF1058_RS07375 0.80 -0.2
250,113 + HMPREF1058_RS07375 0.81 +1.2
250,115 + HMPREF1058_RS07375 0.81 +1.6
250,115 + HMPREF1058_RS07375 0.81 -0.8
250,382 - -2.5
250,503 + -0.7
250,752 + -1.8
250,839 + -0.4
250,855 - -0.1
250,868 + -0.9
250,869 - +0.4
250,905 + HMPREF1058_RS07370 0.13 +0.4
250,906 - HMPREF1058_RS07370 0.13 -0.9
250,909 + HMPREF1058_RS07370 0.13 +0.3
250,909 + HMPREF1058_RS07370 0.13 +0.2
250,909 + HMPREF1058_RS07370 0.13 +0.0
250,993 - HMPREF1058_RS07370 0.20 +0.5
251,026 - HMPREF1058_RS07370 0.23 -0.1
251,149 + HMPREF1058_RS07370 0.34 +0.5
251,155 - HMPREF1058_RS07370 0.34 -1.6
251,157 + HMPREF1058_RS07370 0.34 -0.1
251,158 - HMPREF1058_RS07370 0.34 -1.4
251,216 - HMPREF1058_RS07370 0.39 +0.7
251,217 + HMPREF1058_RS07370 0.39 +0.4
251,218 - HMPREF1058_RS07370 0.39 -0.5
251,228 + HMPREF1058_RS07370 0.40 -0.8
251,244 + HMPREF1058_RS07370 0.42 +0.6
251,244 + HMPREF1058_RS07370 0.42 +0.1
251,299 + HMPREF1058_RS07370 0.46 -1.5
251,299 + HMPREF1058_RS07370 0.46 -0.8
251,300 - HMPREF1058_RS07370 0.46 -0.2
251,301 + HMPREF1058_RS07370 0.47 +0.1
251,338 - HMPREF1058_RS07370 0.50 +0.6
251,338 - HMPREF1058_RS07370 0.50 +0.4
251,404 + HMPREF1058_RS07370 0.55 +0.5
251,446 + HMPREF1058_RS07370 0.59 +0.9
251,447 - HMPREF1058_RS07370 0.59 +0.2
251,447 - HMPREF1058_RS07370 0.59 -0.7
251,454 + HMPREF1058_RS07370 0.60 +0.0
251,455 - HMPREF1058_RS07370 0.60 -0.3
251,466 + HMPREF1058_RS07370 0.61 +2.2
251,543 + HMPREF1058_RS07370 0.67 +0.5
251,544 - HMPREF1058_RS07370 0.67 +0.2
251,544 - HMPREF1058_RS07370 0.67 -0.2
251,546 - HMPREF1058_RS07370 0.68 +0.8

Or see this region's nucleotide sequence