Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07325 and HMPREF1058_RS07320 are separated by 176 nucleotides HMPREF1058_RS07320 and HMPREF1058_RS07315 are separated by 65 nucleotides
HMPREF1058_RS07325: HMPREF1058_RS07325 - efflux RND transporter periplasmic adaptor subunit, at 261,551 to 262,618
_RS07325
HMPREF1058_RS07320: HMPREF1058_RS07320 - AraC family transcriptional regulator, at 262,795 to 263,673
_RS07320
HMPREF1058_RS07315: HMPREF1058_RS07315 - TIGR02757 family protein, at 263,739 to 264,503
_RS07315
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 261.891 kb on - strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.910 kb on - strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.948 kb on - strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 262.021 kb on + strand, within HMPREF1058_RS07325 at 262.183 kb on + strand, within HMPREF1058_RS07325 at 262.464 kb on - strand, within HMPREF1058_RS07325 at 262.589 kb on - strand at 262.619 kb on - strand at 262.619 kb on - strand at 262.619 kb on - strand at 262.642 kb on - strand at 262.719 kb on - strand at 262.750 kb on - strand at 262.942 kb on - strand, within HMPREF1058_RS07320 at 262.972 kb on + strand, within HMPREF1058_RS07320 at 262.973 kb on - strand, within HMPREF1058_RS07320 at 262.973 kb on - strand, within HMPREF1058_RS07320 at 262.978 kb on + strand, within HMPREF1058_RS07320 at 262.979 kb on - strand, within HMPREF1058_RS07320 at 262.979 kb on - strand, within HMPREF1058_RS07320 at 262.990 kb on - strand, within HMPREF1058_RS07320 at 263.051 kb on + strand, within HMPREF1058_RS07320 at 263.057 kb on - strand, within HMPREF1058_RS07320 at 263.124 kb on + strand, within HMPREF1058_RS07320 at 263.276 kb on - strand, within HMPREF1058_RS07320 at 263.289 kb on + strand, within HMPREF1058_RS07320 at 263.290 kb on - strand at 263.290 kb on - strand, within HMPREF1058_RS07320 at 263.294 kb on - strand, within HMPREF1058_RS07320 at 263.294 kb on - strand, within HMPREF1058_RS07320 at 263.404 kb on + strand, within HMPREF1058_RS07320 at 263.408 kb on - strand, within HMPREF1058_RS07320 at 263.600 kb on - strand at 263.612 kb on - strand at 263.638 kb on - strand at 263.697 kb on - strand at 263.701 kb on + strand at 263.702 kb on - strand at 263.704 kb on + strand at 263.705 kb on - strand at 263.706 kb on + strand at 263.735 kb on - strand at 263.775 kb on + strand at 263.775 kb on + strand at 263.836 kb on - strand, within HMPREF1058_RS07315 at 263.852 kb on + strand, within HMPREF1058_RS07315 at 263.949 kb on - strand, within HMPREF1058_RS07315 at 264.126 kb on - strand, within HMPREF1058_RS07315 at 264.129 kb on - strand, within HMPREF1058_RS07315 at 264.129 kb on - strand, within HMPREF1058_RS07315 at 264.130 kb on + strand, within HMPREF1058_RS07315 at 264.130 kb on + strand, within HMPREF1058_RS07315 at 264.131 kb on - strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.133 kb on - strand, within HMPREF1058_RS07315 at 264.133 kb on - strand, within HMPREF1058_RS07315 at 264.134 kb on + strand, within HMPREF1058_RS07315 at 264.134 kb on + strand, within HMPREF1058_RS07315 at 264.137 kb on + strand, within HMPREF1058_RS07315 at 264.138 kb on - strand at 264.386 kb on + strand, within HMPREF1058_RS07315 at 264.395 kb on + strand, within HMPREF1058_RS07315 at 264.508 kb on + strand at 264.508 kb on + strand at 264.509 kb on - strand at 264.509 kb on - strand at 264.509 kb on - strand at 264.652 kb on + strand at 264.659 kb on - strand at 264.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 261,891 - HMPREF1058_RS07325 0.32 -0.6 261,909 + HMPREF1058_RS07325 0.34 -0.8 261,909 + HMPREF1058_RS07325 0.34 -0.1 261,910 - HMPREF1058_RS07325 0.34 +0.7 261,911 + HMPREF1058_RS07325 0.34 -0.7 261,911 + HMPREF1058_RS07325 0.34 +0.8 261,912 - HMPREF1058_RS07325 0.34 +0.9 261,912 - HMPREF1058_RS07325 0.34 -2.1 261,912 - HMPREF1058_RS07325 0.34 +0.2 261,948 - HMPREF1058_RS07325 0.37 -0.4 261,996 + HMPREF1058_RS07325 0.42 +0.1 261,996 + HMPREF1058_RS07325 0.42 -0.0 261,997 - HMPREF1058_RS07325 0.42 +1.6 261,997 - HMPREF1058_RS07325 0.42 +0.2 261,997 - HMPREF1058_RS07325 0.42 -0.2 262,021 + HMPREF1058_RS07325 0.44 -0.6 262,183 + HMPREF1058_RS07325 0.59 +0.0 262,464 - HMPREF1058_RS07325 0.85 +0.2 262,589 - +1.2 262,619 - +0.0 262,619 - -1.4 262,619 - +0.1 262,642 - +0.3 262,719 - -1.2 262,750 - +0.3 262,942 - HMPREF1058_RS07320 0.17 +1.8 262,972 + HMPREF1058_RS07320 0.20 +0.3 262,973 - HMPREF1058_RS07320 0.20 +1.5 262,973 - HMPREF1058_RS07320 0.20 +1.2 262,978 + HMPREF1058_RS07320 0.21 +0.6 262,979 - HMPREF1058_RS07320 0.21 +3.6 262,979 - HMPREF1058_RS07320 0.21 +1.9 262,990 - HMPREF1058_RS07320 0.22 -0.0 263,051 + HMPREF1058_RS07320 0.29 +0.1 263,057 - HMPREF1058_RS07320 0.30 -0.9 263,124 + HMPREF1058_RS07320 0.37 -0.1 263,276 - HMPREF1058_RS07320 0.55 +0.1 263,289 + HMPREF1058_RS07320 0.56 +1.3 263,290 - +0.6 263,290 - HMPREF1058_RS07320 0.56 +1.6 263,294 - HMPREF1058_RS07320 0.57 +0.2 263,294 - HMPREF1058_RS07320 0.57 +1.1 263,404 + HMPREF1058_RS07320 0.69 -0.5 263,408 - HMPREF1058_RS07320 0.70 -2.1 263,600 - +0.1 263,612 - -1.2 263,638 - +0.7 263,697 - -0.5 263,701 + -0.2 263,702 - -1.3 263,704 + -1.2 263,705 - -0.6 263,706 + +0.5 263,735 - -2.2 263,775 + -0.6 263,775 + +0.9 263,836 - HMPREF1058_RS07315 0.13 -1.4 263,852 + HMPREF1058_RS07315 0.15 -0.3 263,949 - HMPREF1058_RS07315 0.27 -0.2 264,126 - HMPREF1058_RS07315 0.51 +0.4 264,129 - HMPREF1058_RS07315 0.51 +0.6 264,129 - HMPREF1058_RS07315 0.51 +0.2 264,130 + HMPREF1058_RS07315 0.51 -0.5 264,130 + HMPREF1058_RS07315 0.51 -0.6 264,131 - HMPREF1058_RS07315 0.51 -0.5 264,132 + HMPREF1058_RS07315 0.51 -0.9 264,132 + HMPREF1058_RS07315 0.51 -0.5 264,132 + HMPREF1058_RS07315 0.51 -0.5 264,133 - HMPREF1058_RS07315 0.52 -0.4 264,133 - HMPREF1058_RS07315 0.52 +0.1 264,134 + HMPREF1058_RS07315 0.52 -1.5 264,134 + HMPREF1058_RS07315 0.52 -0.9 264,137 + HMPREF1058_RS07315 0.52 -1.4 264,138 - -0.6 264,386 + HMPREF1058_RS07315 0.85 -1.1 264,395 + HMPREF1058_RS07315 0.86 +0.2 264,508 + +0.8 264,508 + +0.2 264,509 - -1.2 264,509 - -1.4 264,509 - +0.6 264,652 + +0.6 264,659 - +0.3 264,663 + -0.9
Or see this region's nucleotide sequence