Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07285

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07290 and HMPREF1058_RS07285 are separated by 305 nucleotidesHMPREF1058_RS07285 and HMPREF1058_RS07280 are separated by 40 nucleotidesHMPREF1058_RS07280 and HMPREF1058_RS07275 are separated by 149 nucleotides HMPREF1058_RS07290: HMPREF1058_RS07290 - dihydrodipicolinate synthase family protein, at 269,971 to 270,885 _RS07290 HMPREF1058_RS07285: HMPREF1058_RS07285 - ROK family transcriptional regulator, at 271,191 to 272,396 _RS07285 HMPREF1058_RS07280: HMPREF1058_RS07280 - HAD family hydrolase, at 272,437 to 273,171 _RS07280 HMPREF1058_RS07275: HMPREF1058_RS07275 - glucose-6-phosphate isomerase, at 273,321 to 274,664 _RS07275 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 270.239 kb on + strand, within HMPREF1058_RS07290at 270.239 kb on + strand, within HMPREF1058_RS07290at 270.240 kb on - strand, within HMPREF1058_RS07290at 270.340 kb on - strand, within HMPREF1058_RS07290at 270.381 kb on + strand, within HMPREF1058_RS07290at 270.383 kb on + strand, within HMPREF1058_RS07290at 270.384 kb on - strand, within HMPREF1058_RS07290at 270.449 kb on + strand, within HMPREF1058_RS07290at 270.450 kb on - strand, within HMPREF1058_RS07290at 270.450 kb on - strand, within HMPREF1058_RS07290at 270.450 kb on - strand, within HMPREF1058_RS07290at 270.477 kb on - strand, within HMPREF1058_RS07290at 270.760 kb on - strand, within HMPREF1058_RS07290at 270.760 kb on - strand, within HMPREF1058_RS07290at 270.764 kb on - strand, within HMPREF1058_RS07290at 270.801 kb on - strandat 270.819 kb on - strandat 270.840 kb on - strandat 270.925 kb on - strandat 270.947 kb on + strandat 271.013 kb on + strandat 271.156 kb on - strandat 271.162 kb on - strandat 271.268 kb on + strandat 271.286 kb on + strandat 271.318 kb on + strand, within HMPREF1058_RS07285at 271.319 kb on - strand, within HMPREF1058_RS07285at 271.328 kb on + strand, within HMPREF1058_RS07285at 271.335 kb on - strand, within HMPREF1058_RS07285at 271.514 kb on - strand, within HMPREF1058_RS07285at 271.626 kb on - strand, within HMPREF1058_RS07285at 271.682 kb on + strand, within HMPREF1058_RS07285at 271.682 kb on + strand, within HMPREF1058_RS07285at 271.683 kb on - strand, within HMPREF1058_RS07285at 271.683 kb on - strand, within HMPREF1058_RS07285at 271.683 kb on - strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.691 kb on + strand, within HMPREF1058_RS07285at 271.781 kb on + strand, within HMPREF1058_RS07285at 271.782 kb on - strand, within HMPREF1058_RS07285at 271.797 kb on + strand, within HMPREF1058_RS07285at 271.798 kb on - strand, within HMPREF1058_RS07285at 271.798 kb on - strand, within HMPREF1058_RS07285at 271.799 kb on + strand, within HMPREF1058_RS07285at 271.890 kb on + strand, within HMPREF1058_RS07285at 271.928 kb on + strand, within HMPREF1058_RS07285at 271.982 kb on - strand, within HMPREF1058_RS07285at 272.015 kb on + strand, within HMPREF1058_RS07285at 272.016 kb on - strand, within HMPREF1058_RS07285at 272.031 kb on - strand, within HMPREF1058_RS07285at 272.031 kb on - strand, within HMPREF1058_RS07285at 272.033 kb on + strand, within HMPREF1058_RS07285at 272.063 kb on + strand, within HMPREF1058_RS07285at 272.114 kb on - strand, within HMPREF1058_RS07285at 272.117 kb on + strand, within HMPREF1058_RS07285at 272.118 kb on - strand, within HMPREF1058_RS07285at 272.118 kb on - strand, within HMPREF1058_RS07285at 272.136 kb on - strand, within HMPREF1058_RS07285at 272.167 kb on + strand, within HMPREF1058_RS07285at 272.189 kb on + strand, within HMPREF1058_RS07285at 272.190 kb on - strand, within HMPREF1058_RS07285at 272.195 kb on + strand, within HMPREF1058_RS07285at 272.195 kb on + strand, within HMPREF1058_RS07285at 272.195 kb on + strand, within HMPREF1058_RS07285at 272.198 kb on - strand, within HMPREF1058_RS07285at 272.201 kb on + strand, within HMPREF1058_RS07285at 272.250 kb on + strand, within HMPREF1058_RS07285at 272.366 kb on + strandat 272.367 kb on - strandat 272.409 kb on - strandat 272.419 kb on - strandat 272.427 kb on - strandat 272.449 kb on - strandat 272.597 kb on - strand, within HMPREF1058_RS07280at 272.602 kb on + strand, within HMPREF1058_RS07280at 272.617 kb on + strand, within HMPREF1058_RS07280at 272.620 kb on + strand, within HMPREF1058_RS07280at 272.670 kb on - strand, within HMPREF1058_RS07280at 272.734 kb on + strand, within HMPREF1058_RS07280at 272.833 kb on + strand, within HMPREF1058_RS07280at 272.834 kb on - strand, within HMPREF1058_RS07280at 272.953 kb on + strand, within HMPREF1058_RS07280at 272.953 kb on + strandat 272.954 kb on - strand, within HMPREF1058_RS07280at 272.956 kb on + strand, within HMPREF1058_RS07280at 272.956 kb on + strand, within HMPREF1058_RS07280at 272.956 kb on + strand, within HMPREF1058_RS07280at 272.959 kb on - strand, within HMPREF1058_RS07280at 272.967 kb on + strand, within HMPREF1058_RS07280at 272.967 kb on + strand, within HMPREF1058_RS07280at 272.996 kb on + strand, within HMPREF1058_RS07280at 272.996 kb on + strand, within HMPREF1058_RS07280at 272.997 kb on - strand, within HMPREF1058_RS07280at 273.038 kb on - strand, within HMPREF1058_RS07280at 273.042 kb on + strand, within HMPREF1058_RS07280at 273.166 kb on - strandat 273.176 kb on + strandat 273.176 kb on + strandat 273.177 kb on - strandat 273.177 kb on - strandat 273.177 kb on - strandat 273.189 kb on - strandat 273.292 kb on + strandat 273.293 kb on - strandat 273.293 kb on - strandat 273.322 kb on + strandat 273.322 kb on + strandat 273.323 kb on - strandat 273.323 kb on - strandat 273.323 kb on - strandat 273.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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270,239 + HMPREF1058_RS07290 0.29 +0.6
270,239 + HMPREF1058_RS07290 0.29 +0.6
270,240 - HMPREF1058_RS07290 0.29 -0.7
270,340 - HMPREF1058_RS07290 0.40 +0.4
270,381 + HMPREF1058_RS07290 0.45 +0.2
270,383 + HMPREF1058_RS07290 0.45 +0.4
270,384 - HMPREF1058_RS07290 0.45 +0.0
270,449 + HMPREF1058_RS07290 0.52 +0.2
270,450 - HMPREF1058_RS07290 0.52 -3.7
270,450 - HMPREF1058_RS07290 0.52 -1.4
270,450 - HMPREF1058_RS07290 0.52 +0.4
270,477 - HMPREF1058_RS07290 0.55 -1.5
270,760 - HMPREF1058_RS07290 0.86 -2.2
270,760 - HMPREF1058_RS07290 0.86 +1.0
270,764 - HMPREF1058_RS07290 0.87 +0.2
270,801 - +0.4
270,819 - -0.1
270,840 - -0.4
270,925 - +0.4
270,947 + -2.9
271,013 + -1.6
271,156 - +2.9
271,162 - +3.2
271,268 + +4.1
271,286 + +2.6
271,318 + HMPREF1058_RS07285 0.11 -3.3
271,319 - HMPREF1058_RS07285 0.11 +2.6
271,328 + HMPREF1058_RS07285 0.11 +2.9
271,335 - HMPREF1058_RS07285 0.12 +3.0
271,514 - HMPREF1058_RS07285 0.27 +2.9
271,626 - HMPREF1058_RS07285 0.36 +0.8
271,682 + HMPREF1058_RS07285 0.41 +2.5
271,682 + HMPREF1058_RS07285 0.41 +3.5
271,683 - HMPREF1058_RS07285 0.41 +2.2
271,683 - HMPREF1058_RS07285 0.41 +2.8
271,683 - HMPREF1058_RS07285 0.41 +3.2
271,686 + HMPREF1058_RS07285 0.41 +3.5
271,686 + HMPREF1058_RS07285 0.41 +3.7
271,686 + HMPREF1058_RS07285 0.41 +2.8
271,686 + HMPREF1058_RS07285 0.41 +3.2
271,691 + HMPREF1058_RS07285 0.41 +3.7
271,781 + HMPREF1058_RS07285 0.49 +2.6
271,782 - HMPREF1058_RS07285 0.49 +3.8
271,797 + HMPREF1058_RS07285 0.50 +3.3
271,798 - HMPREF1058_RS07285 0.50 +2.7
271,798 - HMPREF1058_RS07285 0.50 +3.0
271,799 + HMPREF1058_RS07285 0.50 +3.1
271,890 + HMPREF1058_RS07285 0.58 +5.6
271,928 + HMPREF1058_RS07285 0.61 +4.2
271,982 - HMPREF1058_RS07285 0.66 +3.1
272,015 + HMPREF1058_RS07285 0.68 +3.4
272,016 - HMPREF1058_RS07285 0.68 +2.2
272,031 - HMPREF1058_RS07285 0.70 +2.7
272,031 - HMPREF1058_RS07285 0.70 +3.0
272,033 + HMPREF1058_RS07285 0.70 +4.2
272,063 + HMPREF1058_RS07285 0.72 +2.2
272,114 - HMPREF1058_RS07285 0.77 +2.9
272,117 + HMPREF1058_RS07285 0.77 +3.9
272,118 - HMPREF1058_RS07285 0.77 +3.2
272,118 - HMPREF1058_RS07285 0.77 +2.8
272,136 - HMPREF1058_RS07285 0.78 +4.4
272,167 + HMPREF1058_RS07285 0.81 +3.1
272,189 + HMPREF1058_RS07285 0.83 +3.6
272,190 - HMPREF1058_RS07285 0.83 +3.0
272,195 + HMPREF1058_RS07285 0.83 +3.8
272,195 + HMPREF1058_RS07285 0.83 +4.0
272,195 + HMPREF1058_RS07285 0.83 +3.7
272,198 - HMPREF1058_RS07285 0.83 +2.9
272,201 + HMPREF1058_RS07285 0.84 +3.0
272,250 + HMPREF1058_RS07285 0.88 +3.4
272,366 + +3.5
272,367 - +3.3
272,409 - +0.3
272,419 - +0.2
272,427 - -0.0
272,449 - +0.8
272,597 - HMPREF1058_RS07280 0.22 -2.2
272,602 + HMPREF1058_RS07280 0.22 -0.9
272,617 + HMPREF1058_RS07280 0.24 +0.8
272,620 + HMPREF1058_RS07280 0.25 +0.2
272,670 - HMPREF1058_RS07280 0.32 -1.2
272,734 + HMPREF1058_RS07280 0.40 -0.2
272,833 + HMPREF1058_RS07280 0.54 +0.2
272,834 - HMPREF1058_RS07280 0.54 +0.2
272,953 + HMPREF1058_RS07280 0.70 -0.2
272,953 + +0.2
272,954 - HMPREF1058_RS07280 0.70 +0.9
272,956 + HMPREF1058_RS07280 0.71 -1.0
272,956 + HMPREF1058_RS07280 0.71 -0.2
272,956 + HMPREF1058_RS07280 0.71 -0.2
272,959 - HMPREF1058_RS07280 0.71 +0.3
272,967 + HMPREF1058_RS07280 0.72 +1.5
272,967 + HMPREF1058_RS07280 0.72 -0.5
272,996 + HMPREF1058_RS07280 0.76 -1.8
272,996 + HMPREF1058_RS07280 0.76 -0.2
272,997 - HMPREF1058_RS07280 0.76 +0.2
273,038 - HMPREF1058_RS07280 0.82 -0.9
273,042 + HMPREF1058_RS07280 0.82 -1.2
273,166 - -0.4
273,176 + +0.1
273,176 + +1.0
273,177 - +0.0
273,177 - +0.8
273,177 - +0.5
273,189 - +0.3
273,292 + -1.1
273,293 - +0.2
273,293 - -0.6
273,322 + +1.7
273,322 + +0.9
273,323 - +0.3
273,323 - +0.5
273,323 - +1.0
273,324 + +1.2

Or see this region's nucleotide sequence