Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07095 and HMPREF1058_RS07090 are separated by 29 nucleotides HMPREF1058_RS07090 and HMPREF1058_RS07085 are separated by 2 nucleotides HMPREF1058_RS07085 and HMPREF1058_RS07080 are separated by 77 nucleotides
HMPREF1058_RS07095: HMPREF1058_RS07095 - PD40 domain-containing protein, at 317,974 to 321,234
_RS07095
HMPREF1058_RS07090: HMPREF1058_RS07090 - hypothetical protein, at 321,264 to 321,530
_RS07090
HMPREF1058_RS07085: HMPREF1058_RS07085 - phage holin family protein, at 321,533 to 321,889
_RS07085
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
Position (kb) 317
318
319
320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.136 kb on + strand at 317.262 kb on + strand at 317.346 kb on + strand at 317.347 kb on - strand at 317.347 kb on - strand at 317.351 kb on - strand at 317.371 kb on + strand at 317.372 kb on - strand at 317.492 kb on - strand at 317.503 kb on + strand at 317.511 kb on - strand at 317.546 kb on + strand at 317.645 kb on - strand at 317.649 kb on + strand at 317.650 kb on - strand at 317.651 kb on + strand at 317.721 kb on - strand at 317.721 kb on - strand at 317.774 kb on - strand at 317.774 kb on - strand at 317.774 kb on - strand at 317.778 kb on - strand at 317.808 kb on + strand at 317.808 kb on + strand at 317.808 kb on + strand at 317.818 kb on + strand at 317.818 kb on + strand at 317.854 kb on + strand at 317.861 kb on - strand at 318.065 kb on + strand at 318.066 kb on - strand at 318.124 kb on - strand at 318.233 kb on - strand at 318.272 kb on + strand at 318.315 kb on + strand, within HMPREF1058_RS07095 at 318.334 kb on + strand, within HMPREF1058_RS07095 at 318.338 kb on + strand, within HMPREF1058_RS07095 at 318.338 kb on + strand, within HMPREF1058_RS07095 at 318.379 kb on + strand, within HMPREF1058_RS07095 at 318.382 kb on + strand, within HMPREF1058_RS07095 at 318.441 kb on + strand, within HMPREF1058_RS07095 at 318.442 kb on - strand, within HMPREF1058_RS07095 at 318.477 kb on + strand, within HMPREF1058_RS07095 at 318.479 kb on + strand, within HMPREF1058_RS07095 at 318.480 kb on - strand, within HMPREF1058_RS07095 at 318.480 kb on - strand, within HMPREF1058_RS07095 at 318.482 kb on - strand at 318.482 kb on - strand, within HMPREF1058_RS07095 at 318.482 kb on - strand, within HMPREF1058_RS07095 at 318.514 kb on + strand, within HMPREF1058_RS07095 at 318.515 kb on - strand, within HMPREF1058_RS07095 at 318.520 kb on + strand, within HMPREF1058_RS07095 at 318.521 kb on - strand, within HMPREF1058_RS07095 at 318.521 kb on - strand, within HMPREF1058_RS07095 at 318.556 kb on + strand, within HMPREF1058_RS07095 at 318.559 kb on - strand, within HMPREF1058_RS07095 at 318.597 kb on + strand, within HMPREF1058_RS07095 at 318.598 kb on - strand, within HMPREF1058_RS07095 at 318.661 kb on - strand, within HMPREF1058_RS07095 at 318.661 kb on - strand, within HMPREF1058_RS07095 at 318.663 kb on - strand, within HMPREF1058_RS07095 at 318.665 kb on - strand, within HMPREF1058_RS07095 at 318.665 kb on - strand, within HMPREF1058_RS07095 at 318.665 kb on - strand, within HMPREF1058_RS07095 at 318.714 kb on - strand, within HMPREF1058_RS07095 at 318.771 kb on + strand, within HMPREF1058_RS07095 at 318.843 kb on - strand, within HMPREF1058_RS07095 at 318.854 kb on + strand, within HMPREF1058_RS07095 at 318.855 kb on - strand, within HMPREF1058_RS07095 at 318.883 kb on + strand, within HMPREF1058_RS07095 at 318.883 kb on + strand, within HMPREF1058_RS07095 at 318.885 kb on + strand, within HMPREF1058_RS07095 at 318.885 kb on + strand, within HMPREF1058_RS07095 at 318.885 kb on + strand, within HMPREF1058_RS07095 at 318.886 kb on - strand, within HMPREF1058_RS07095 at 318.984 kb on - strand, within HMPREF1058_RS07095 at 319.002 kb on - strand, within HMPREF1058_RS07095 at 319.046 kb on - strand, within HMPREF1058_RS07095 at 319.056 kb on + strand, within HMPREF1058_RS07095 at 319.075 kb on + strand, within HMPREF1058_RS07095 at 319.076 kb on - strand, within HMPREF1058_RS07095 at 319.354 kb on + strand, within HMPREF1058_RS07095 at 319.354 kb on + strand, within HMPREF1058_RS07095 at 319.355 kb on - strand, within HMPREF1058_RS07095 at 319.382 kb on - strand, within HMPREF1058_RS07095 at 319.613 kb on + strand, within HMPREF1058_RS07095 at 319.613 kb on + strand, within HMPREF1058_RS07095 at 319.613 kb on + strand, within HMPREF1058_RS07095 at 319.614 kb on - strand, within HMPREF1058_RS07095 at 319.614 kb on - strand, within HMPREF1058_RS07095 at 319.614 kb on - strand, within HMPREF1058_RS07095 at 319.808 kb on - strand, within HMPREF1058_RS07095 at 319.812 kb on - strand, within HMPREF1058_RS07095 at 319.812 kb on - strand, within HMPREF1058_RS07095 at 319.850 kb on + strand, within HMPREF1058_RS07095 at 319.941 kb on + strand, within HMPREF1058_RS07095 at 319.941 kb on + strand, within HMPREF1058_RS07095 at 320.078 kb on - strand, within HMPREF1058_RS07095 at 320.091 kb on - strand, within HMPREF1058_RS07095 at 320.091 kb on - strand, within HMPREF1058_RS07095 at 320.130 kb on + strand, within HMPREF1058_RS07095 at 320.178 kb on + strand, within HMPREF1058_RS07095 at 320.204 kb on + strand, within HMPREF1058_RS07095 at 320.223 kb on - strand, within HMPREF1058_RS07095 at 320.224 kb on + strand, within HMPREF1058_RS07095 at 320.224 kb on + strand, within HMPREF1058_RS07095 at 320.225 kb on - strand, within HMPREF1058_RS07095 at 320.225 kb on - strand, within HMPREF1058_RS07095 at 320.225 kb on - strand at 320.240 kb on - strand, within HMPREF1058_RS07095 at 320.377 kb on + strand, within HMPREF1058_RS07095 at 320.410 kb on + strand, within HMPREF1058_RS07095 at 320.411 kb on - strand, within HMPREF1058_RS07095 at 320.411 kb on - strand, within HMPREF1058_RS07095 at 320.481 kb on + strand, within HMPREF1058_RS07095 at 320.534 kb on - strand, within HMPREF1058_RS07095 at 320.537 kb on + strand, within HMPREF1058_RS07095 at 320.709 kb on - strand, within HMPREF1058_RS07095 at 320.742 kb on + strand, within HMPREF1058_RS07095 at 320.743 kb on - strand, within HMPREF1058_RS07095 at 320.803 kb on + strand, within HMPREF1058_RS07095 at 320.804 kb on - strand, within HMPREF1058_RS07095 at 320.854 kb on + strand, within HMPREF1058_RS07095 at 320.892 kb on - strand, within HMPREF1058_RS07095 at 320.923 kb on - strand at 320.974 kb on - strand at 321.057 kb on + strand at 321.081 kb on + strand at 321.111 kb on - strand at 321.182 kb on + strand at 321.183 kb on - strand at 321.221 kb on - strand at 321.258 kb on - strand at 321.260 kb on + strand at 321.265 kb on + strand at 321.287 kb on - strand at 321.351 kb on - strand, within HMPREF1058_RS07090 at 321.448 kb on - strand, within HMPREF1058_RS07090 at 321.661 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.690 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.712 kb on - strand, within HMPREF1058_RS07085 at 321.725 kb on - strand, within HMPREF1058_RS07085 at 321.735 kb on - strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.792 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.862 kb on + strand at 321.863 kb on - strand at 321.947 kb on + strand at 321.947 kb on + strand at 321.947 kb on + strand at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 317,136 + -0.4 317,262 + -0.4 317,346 + -0.5 317,347 - -1.4 317,347 - -0.2 317,351 - -0.0 317,371 + +1.2 317,372 - +1.6 317,492 - -0.4 317,503 + -0.9 317,511 - +0.7 317,546 + -1.3 317,645 - -0.9 317,649 + +0.2 317,650 - -0.6 317,651 + +0.3 317,721 - -2.0 317,721 - -0.6 317,774 - -0.1 317,774 - +0.2 317,774 - +0.3 317,778 - +0.8 317,808 + -0.9 317,808 + +1.0 317,808 + -1.1 317,818 + -1.0 317,818 + +1.2 317,854 + -0.4 317,861 - +0.4 318,065 + +0.4 318,066 - +0.3 318,124 - +0.5 318,233 - +0.8 318,272 + +2.4 318,315 + HMPREF1058_RS07095 0.10 +2.0 318,334 + HMPREF1058_RS07095 0.11 +0.6 318,338 + HMPREF1058_RS07095 0.11 -0.3 318,338 + HMPREF1058_RS07095 0.11 +0.7 318,379 + HMPREF1058_RS07095 0.12 +0.6 318,382 + HMPREF1058_RS07095 0.13 +0.3 318,441 + HMPREF1058_RS07095 0.14 +0.5 318,442 - HMPREF1058_RS07095 0.14 +0.1 318,477 + HMPREF1058_RS07095 0.15 +1.1 318,479 + HMPREF1058_RS07095 0.15 +1.4 318,480 - HMPREF1058_RS07095 0.16 +0.9 318,480 - HMPREF1058_RS07095 0.16 +0.3 318,482 - +0.9 318,482 - HMPREF1058_RS07095 0.16 +0.8 318,482 - HMPREF1058_RS07095 0.16 +1.5 318,514 + HMPREF1058_RS07095 0.17 +0.0 318,515 - HMPREF1058_RS07095 0.17 +0.9 318,520 + HMPREF1058_RS07095 0.17 +0.8 318,521 - HMPREF1058_RS07095 0.17 +0.5 318,521 - HMPREF1058_RS07095 0.17 +0.7 318,556 + HMPREF1058_RS07095 0.18 +0.4 318,559 - HMPREF1058_RS07095 0.18 +0.4 318,597 + HMPREF1058_RS07095 0.19 +0.2 318,598 - HMPREF1058_RS07095 0.19 -1.0 318,661 - HMPREF1058_RS07095 0.21 -0.4 318,661 - HMPREF1058_RS07095 0.21 +0.5 318,663 - HMPREF1058_RS07095 0.21 +0.2 318,665 - HMPREF1058_RS07095 0.21 +2.1 318,665 - HMPREF1058_RS07095 0.21 +0.8 318,665 - HMPREF1058_RS07095 0.21 +1.2 318,714 - HMPREF1058_RS07095 0.23 -0.4 318,771 + HMPREF1058_RS07095 0.24 +0.8 318,843 - HMPREF1058_RS07095 0.27 +2.3 318,854 + HMPREF1058_RS07095 0.27 +0.6 318,855 - HMPREF1058_RS07095 0.27 +1.9 318,883 + HMPREF1058_RS07095 0.28 +1.1 318,883 + HMPREF1058_RS07095 0.28 +0.4 318,885 + HMPREF1058_RS07095 0.28 +1.2 318,885 + HMPREF1058_RS07095 0.28 -0.1 318,885 + HMPREF1058_RS07095 0.28 +0.3 318,886 - HMPREF1058_RS07095 0.28 +0.3 318,984 - HMPREF1058_RS07095 0.31 +0.5 319,002 - HMPREF1058_RS07095 0.32 +0.3 319,046 - HMPREF1058_RS07095 0.33 +1.0 319,056 + HMPREF1058_RS07095 0.33 -1.7 319,075 + HMPREF1058_RS07095 0.34 +1.1 319,076 - HMPREF1058_RS07095 0.34 +0.6 319,354 + HMPREF1058_RS07095 0.42 +0.3 319,354 + HMPREF1058_RS07095 0.42 +1.9 319,355 - HMPREF1058_RS07095 0.42 -1.9 319,382 - HMPREF1058_RS07095 0.43 +0.8 319,613 + HMPREF1058_RS07095 0.50 +0.0 319,613 + HMPREF1058_RS07095 0.50 +0.6 319,613 + HMPREF1058_RS07095 0.50 +0.4 319,614 - HMPREF1058_RS07095 0.50 +0.4 319,614 - HMPREF1058_RS07095 0.50 +0.7 319,614 - HMPREF1058_RS07095 0.50 +0.9 319,808 - HMPREF1058_RS07095 0.56 +0.7 319,812 - HMPREF1058_RS07095 0.56 +0.8 319,812 - HMPREF1058_RS07095 0.56 -0.5 319,850 + HMPREF1058_RS07095 0.58 +0.4 319,941 + HMPREF1058_RS07095 0.60 +1.3 319,941 + HMPREF1058_RS07095 0.60 +0.5 320,078 - HMPREF1058_RS07095 0.65 -0.3 320,091 - HMPREF1058_RS07095 0.65 +0.9 320,091 - HMPREF1058_RS07095 0.65 +0.6 320,130 + HMPREF1058_RS07095 0.66 -0.0 320,178 + HMPREF1058_RS07095 0.68 +0.6 320,204 + HMPREF1058_RS07095 0.68 -0.4 320,223 - HMPREF1058_RS07095 0.69 +1.7 320,224 + HMPREF1058_RS07095 0.69 +1.6 320,224 + HMPREF1058_RS07095 0.69 +1.5 320,225 - HMPREF1058_RS07095 0.69 -0.1 320,225 - HMPREF1058_RS07095 0.69 -0.2 320,225 - +0.2 320,240 - HMPREF1058_RS07095 0.69 +2.0 320,377 + HMPREF1058_RS07095 0.74 +0.3 320,410 + HMPREF1058_RS07095 0.75 -0.7 320,411 - HMPREF1058_RS07095 0.75 +2.1 320,411 - HMPREF1058_RS07095 0.75 -0.4 320,481 + HMPREF1058_RS07095 0.77 +0.5 320,534 - HMPREF1058_RS07095 0.79 +0.2 320,537 + HMPREF1058_RS07095 0.79 +0.5 320,709 - HMPREF1058_RS07095 0.84 +0.0 320,742 + HMPREF1058_RS07095 0.85 +0.5 320,743 - HMPREF1058_RS07095 0.85 +0.7 320,803 + HMPREF1058_RS07095 0.87 +1.5 320,804 - HMPREF1058_RS07095 0.87 +0.7 320,854 + HMPREF1058_RS07095 0.88 +0.8 320,892 - HMPREF1058_RS07095 0.89 +0.7 320,923 - -0.6 320,974 - +0.6 321,057 + +1.2 321,081 + -0.3 321,111 - +1.2 321,182 + +0.7 321,183 - +0.1 321,221 - +0.4 321,258 - -0.8 321,260 + -0.2 321,265 + -0.4 321,287 - -0.6 321,351 - HMPREF1058_RS07090 0.33 -1.3 321,448 - HMPREF1058_RS07090 0.69 -2.7 321,661 + HMPREF1058_RS07085 0.36 +0.4 321,671 + HMPREF1058_RS07085 0.39 +0.8 321,671 + HMPREF1058_RS07085 0.39 +0.1 321,690 + HMPREF1058_RS07085 0.44 +0.1 321,700 + HMPREF1058_RS07085 0.47 +0.3 321,700 + HMPREF1058_RS07085 0.47 -0.3 321,711 + HMPREF1058_RS07085 0.50 +2.2 321,711 + HMPREF1058_RS07085 0.50 +0.7 321,712 - HMPREF1058_RS07085 0.50 -0.8 321,725 - HMPREF1058_RS07085 0.54 -0.9 321,735 - HMPREF1058_RS07085 0.57 +1.3 321,775 + HMPREF1058_RS07085 0.68 +0.8 321,775 + HMPREF1058_RS07085 0.68 +0.6 321,775 + HMPREF1058_RS07085 0.68 +1.9 321,792 - HMPREF1058_RS07085 0.73 +1.2 321,804 - HMPREF1058_RS07085 0.76 -0.3 321,804 - HMPREF1058_RS07085 0.76 -1.9 321,862 + +0.4 321,863 - +1.2 321,947 + -0.3 321,947 + +2.2 321,947 + +1.2 322,024 + HMPREF1058_RS07080 0.29 +1.3 322,025 - HMPREF1058_RS07080 0.29 -1.2 322,025 - HMPREF1058_RS07080 0.29 +0.8 322,042 - HMPREF1058_RS07080 0.38 -1.4 322,046 - HMPREF1058_RS07080 0.40 -0.4 322,149 + +2.5 322,149 + -0.1 322,149 + +0.9
Or see this region's nucleotide sequence