Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06760

Experiment: Beta-Lactose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS06765 and HMPREF1058_RS06760 overlap by 4 nucleotidesHMPREF1058_RS06760 and HMPREF1058_RS06755 overlap by 4 nucleotides HMPREF1058_RS06765: HMPREF1058_RS06765 - glycosyltransferase family 1 protein, at 401,336 to 402,469 _RS06765 HMPREF1058_RS06760: HMPREF1058_RS06760 - glycosyltransferase family 4 protein, at 402,466 to 403,617 _RS06760 HMPREF1058_RS06755: HMPREF1058_RS06755 - glycosyltransferase family 4 protein, at 403,614 to 404,759 _RS06755 Position (kb) 402 403 404Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 401.488 kb on + strand, within HMPREF1058_RS06765at 401.491 kb on - strand, within HMPREF1058_RS06765at 401.567 kb on + strand, within HMPREF1058_RS06765at 401.649 kb on - strand, within HMPREF1058_RS06765at 401.695 kb on + strand, within HMPREF1058_RS06765at 401.711 kb on - strand, within HMPREF1058_RS06765at 401.711 kb on - strand, within HMPREF1058_RS06765at 401.764 kb on + strand, within HMPREF1058_RS06765at 401.764 kb on + strand, within HMPREF1058_RS06765at 401.764 kb on + strand, within HMPREF1058_RS06765at 401.856 kb on + strand, within HMPREF1058_RS06765at 401.856 kb on + strand, within HMPREF1058_RS06765at 401.861 kb on + strand, within HMPREF1058_RS06765at 401.877 kb on - strand, within HMPREF1058_RS06765at 401.879 kb on + strand, within HMPREF1058_RS06765at 401.880 kb on - strand, within HMPREF1058_RS06765at 401.962 kb on + strand, within HMPREF1058_RS06765at 402.088 kb on - strand, within HMPREF1058_RS06765at 402.106 kb on - strand, within HMPREF1058_RS06765at 402.109 kb on + strand, within HMPREF1058_RS06765at 402.109 kb on + strand, within HMPREF1058_RS06765at 402.109 kb on + strand, within HMPREF1058_RS06765at 402.109 kb on + strand, within HMPREF1058_RS06765at 402.110 kb on - strand, within HMPREF1058_RS06765at 402.110 kb on - strand, within HMPREF1058_RS06765at 402.125 kb on + strand, within HMPREF1058_RS06765at 402.197 kb on + strand, within HMPREF1058_RS06765at 402.198 kb on - strand, within HMPREF1058_RS06765at 402.198 kb on - strand, within HMPREF1058_RS06765at 402.240 kb on - strand, within HMPREF1058_RS06765at 402.299 kb on + strand, within HMPREF1058_RS06765at 402.303 kb on - strand, within HMPREF1058_RS06765at 402.351 kb on + strand, within HMPREF1058_RS06765at 402.352 kb on - strand, within HMPREF1058_RS06765at 402.352 kb on - strand, within HMPREF1058_RS06765at 402.456 kb on + strandat 402.457 kb on - strandat 402.776 kb on + strand, within HMPREF1058_RS06760at 402.776 kb on + strand, within HMPREF1058_RS06760at 402.779 kb on - strand, within HMPREF1058_RS06760at 402.844 kb on + strand, within HMPREF1058_RS06760at 402.846 kb on + strand, within HMPREF1058_RS06760at 402.847 kb on - strand, within HMPREF1058_RS06760at 402.909 kb on + strand, within HMPREF1058_RS06760at 402.984 kb on - strand, within HMPREF1058_RS06760at 402.984 kb on - strand, within HMPREF1058_RS06760at 402.984 kb on - strand, within HMPREF1058_RS06760at 403.223 kb on + strand, within HMPREF1058_RS06760at 403.237 kb on - strand, within HMPREF1058_RS06760at 403.362 kb on - strand, within HMPREF1058_RS06760at 403.362 kb on - strand, within HMPREF1058_RS06760at 403.389 kb on - strand, within HMPREF1058_RS06760at 403.397 kb on - strand, within HMPREF1058_RS06760at 403.509 kb on + strandat 403.514 kb on - strandat 403.514 kb on - strandat 403.541 kb on + strandat 403.541 kb on + strandat 403.542 kb on - strandat 403.600 kb on + strandat 403.601 kb on - strandat 403.686 kb on - strandat 403.767 kb on + strand, within HMPREF1058_RS06755at 403.767 kb on + strand, within HMPREF1058_RS06755at 403.768 kb on - strand, within HMPREF1058_RS06755at 403.768 kb on - strand, within HMPREF1058_RS06755at 403.770 kb on - strand, within HMPREF1058_RS06755at 403.901 kb on - strand, within HMPREF1058_RS06755at 403.937 kb on - strand, within HMPREF1058_RS06755at 403.948 kb on - strand, within HMPREF1058_RS06755at 404.019 kb on - strand, within HMPREF1058_RS06755at 404.019 kb on - strand, within HMPREF1058_RS06755at 404.027 kb on - strand, within HMPREF1058_RS06755at 404.175 kb on + strand, within HMPREF1058_RS06755at 404.175 kb on + strand, within HMPREF1058_RS06755at 404.204 kb on + strand, within HMPREF1058_RS06755at 404.204 kb on + strand, within HMPREF1058_RS06755at 404.208 kb on + strand, within HMPREF1058_RS06755at 404.209 kb on - strand, within HMPREF1058_RS06755at 404.259 kb on + strand, within HMPREF1058_RS06755at 404.261 kb on + strand, within HMPREF1058_RS06755at 404.270 kb on + strand, within HMPREF1058_RS06755at 404.308 kb on + strand, within HMPREF1058_RS06755at 404.309 kb on - strand, within HMPREF1058_RS06755at 404.577 kb on - strand, within HMPREF1058_RS06755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
remove
401,488 + HMPREF1058_RS06765 0.13 +0.6
401,491 - HMPREF1058_RS06765 0.14 +1.2
401,567 + HMPREF1058_RS06765 0.20 -2.7
401,649 - HMPREF1058_RS06765 0.28 +0.9
401,695 + HMPREF1058_RS06765 0.32 -0.6
401,711 - HMPREF1058_RS06765 0.33 +0.9
401,711 - HMPREF1058_RS06765 0.33 -2.6
401,764 + HMPREF1058_RS06765 0.38 +0.8
401,764 + HMPREF1058_RS06765 0.38 +0.6
401,764 + HMPREF1058_RS06765 0.38 -0.3
401,856 + HMPREF1058_RS06765 0.46 +0.9
401,856 + HMPREF1058_RS06765 0.46 -0.1
401,861 + HMPREF1058_RS06765 0.46 -0.9
401,877 - HMPREF1058_RS06765 0.48 +1.8
401,879 + HMPREF1058_RS06765 0.48 -1.9
401,880 - HMPREF1058_RS06765 0.48 -1.6
401,962 + HMPREF1058_RS06765 0.55 -0.9
402,088 - HMPREF1058_RS06765 0.66 +1.2
402,106 - HMPREF1058_RS06765 0.68 +1.8
402,109 + HMPREF1058_RS06765 0.68 -0.2
402,109 + HMPREF1058_RS06765 0.68 -0.2
402,109 + HMPREF1058_RS06765 0.68 +2.2
402,109 + HMPREF1058_RS06765 0.68 -0.6
402,110 - HMPREF1058_RS06765 0.68 +0.2
402,110 - HMPREF1058_RS06765 0.68 +1.2
402,125 + HMPREF1058_RS06765 0.70 +0.2
402,197 + HMPREF1058_RS06765 0.76 +0.2
402,198 - HMPREF1058_RS06765 0.76 +1.0
402,198 - HMPREF1058_RS06765 0.76 +0.9
402,240 - HMPREF1058_RS06765 0.80 +0.1
402,299 + HMPREF1058_RS06765 0.85 +3.1
402,303 - HMPREF1058_RS06765 0.85 +1.4
402,351 + HMPREF1058_RS06765 0.90 -0.5
402,352 - HMPREF1058_RS06765 0.90 +0.4
402,352 - HMPREF1058_RS06765 0.90 +0.8
402,456 + -1.2
402,457 - -1.0
402,776 + HMPREF1058_RS06760 0.27 +0.9
402,776 + HMPREF1058_RS06760 0.27 +1.4
402,779 - HMPREF1058_RS06760 0.27 +0.6
402,844 + HMPREF1058_RS06760 0.33 +2.2
402,846 + HMPREF1058_RS06760 0.33 +0.3
402,847 - HMPREF1058_RS06760 0.33 +0.9
402,909 + HMPREF1058_RS06760 0.38 +0.3
402,984 - HMPREF1058_RS06760 0.45 -1.0
402,984 - HMPREF1058_RS06760 0.45 +0.7
402,984 - HMPREF1058_RS06760 0.45 +0.4
403,223 + HMPREF1058_RS06760 0.66 +1.4
403,237 - HMPREF1058_RS06760 0.67 +0.6
403,362 - HMPREF1058_RS06760 0.78 +0.2
403,362 - HMPREF1058_RS06760 0.78 +0.5
403,389 - HMPREF1058_RS06760 0.80 +0.7
403,397 - HMPREF1058_RS06760 0.81 -1.4
403,509 + -1.5
403,514 - +1.4
403,514 - -0.5
403,541 + -0.6
403,541 + -0.7
403,542 - +0.0
403,600 + -0.1
403,601 - +1.1
403,686 - +1.2
403,767 + HMPREF1058_RS06755 0.13 +0.3
403,767 + HMPREF1058_RS06755 0.13 -0.5
403,768 - HMPREF1058_RS06755 0.13 +0.2
403,768 - HMPREF1058_RS06755 0.13 +0.1
403,770 - HMPREF1058_RS06755 0.14 +2.5
403,901 - HMPREF1058_RS06755 0.25 -0.5
403,937 - HMPREF1058_RS06755 0.28 -0.5
403,948 - HMPREF1058_RS06755 0.29 -1.3
404,019 - HMPREF1058_RS06755 0.35 -0.7
404,019 - HMPREF1058_RS06755 0.35 -0.3
404,027 - HMPREF1058_RS06755 0.36 +0.3
404,175 + HMPREF1058_RS06755 0.49 -0.7
404,175 + HMPREF1058_RS06755 0.49 -3.0
404,204 + HMPREF1058_RS06755 0.51 +0.2
404,204 + HMPREF1058_RS06755 0.51 +0.9
404,208 + HMPREF1058_RS06755 0.52 +0.0
404,209 - HMPREF1058_RS06755 0.52 +0.5
404,259 + HMPREF1058_RS06755 0.56 -1.9
404,261 + HMPREF1058_RS06755 0.56 -1.1
404,270 + HMPREF1058_RS06755 0.57 -0.7
404,308 + HMPREF1058_RS06755 0.61 -0.0
404,309 - HMPREF1058_RS06755 0.61 -0.1
404,577 - HMPREF1058_RS06755 0.84 -1.1

Or see this region's nucleotide sequence