Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06745 and HMPREF1058_RS06740 are separated by 612 nucleotides HMPREF1058_RS06740 and HMPREF1058_RS06735 overlap by 14 nucleotides HMPREF1058_RS06735 and HMPREF1058_RS06730 are separated by 13 nucleotides
HMPREF1058_RS06745: HMPREF1058_RS06745 - glycosyltransferase family 2 protein, at 406,034 to 406,984
_RS06745
HMPREF1058_RS06740: HMPREF1058_RS06740 - glycosyltransferase, at 407,597 to 408,778
_RS06740
HMPREF1058_RS06735: HMPREF1058_RS06735 - ABC transporter permease, at 408,765 to 409,628
_RS06735
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 406.622 kb on + strand, within HMPREF1058_RS06745 at 406.622 kb on + strand, within HMPREF1058_RS06745 at 406.632 kb on + strand, within HMPREF1058_RS06745 at 406.659 kb on + strand, within HMPREF1058_RS06745 at 406.673 kb on - strand, within HMPREF1058_RS06745 at 406.675 kb on + strand, within HMPREF1058_RS06745 at 406.675 kb on + strand, within HMPREF1058_RS06745 at 406.761 kb on + strand, within HMPREF1058_RS06745 at 406.802 kb on - strand, within HMPREF1058_RS06745 at 407.033 kb on - strand at 407.088 kb on - strand at 407.171 kb on + strand at 407.219 kb on + strand at 407.250 kb on - strand at 407.462 kb on + strand at 407.463 kb on - strand at 407.463 kb on - strand at 407.466 kb on + strand at 407.466 kb on + strand at 407.466 kb on + strand at 407.467 kb on - strand at 407.484 kb on + strand at 407.484 kb on + strand at 407.484 kb on + strand at 407.485 kb on - strand at 407.489 kb on - strand at 407.517 kb on + strand at 407.517 kb on + strand at 407.518 kb on - strand at 407.518 kb on - strand at 407.643 kb on + strand at 407.720 kb on - strand, within HMPREF1058_RS06740 at 407.735 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.834 kb on - strand, within HMPREF1058_RS06740 at 407.874 kb on - strand, within HMPREF1058_RS06740 at 407.925 kb on + strand, within HMPREF1058_RS06740 at 407.946 kb on + strand, within HMPREF1058_RS06740 at 407.947 kb on - strand, within HMPREF1058_RS06740 at 408.039 kb on - strand, within HMPREF1058_RS06740 at 408.068 kb on + strand, within HMPREF1058_RS06740 at 408.069 kb on - strand, within HMPREF1058_RS06740 at 408.132 kb on + strand, within HMPREF1058_RS06740 at 408.133 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.399 kb on - strand, within HMPREF1058_RS06740 at 408.455 kb on + strand, within HMPREF1058_RS06740 at 408.473 kb on + strand, within HMPREF1058_RS06740 at 408.473 kb on + strand, within HMPREF1058_RS06740 at 408.622 kb on - strand, within HMPREF1058_RS06740 at 408.647 kb on + strand, within HMPREF1058_RS06740 at 408.650 kb on - strand, within HMPREF1058_RS06740 at 408.685 kb on + strand at 408.706 kb on + strand at 408.707 kb on - strand at 408.717 kb on + strand at 408.718 kb on - strand at 408.718 kb on - strand at 408.869 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.916 kb on + strand, within HMPREF1058_RS06735 at 408.917 kb on - strand, within HMPREF1058_RS06735 at 408.950 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.070 kb on - strand, within HMPREF1058_RS06735 at 409.157 kb on + strand, within HMPREF1058_RS06735 at 409.158 kb on - strand, within HMPREF1058_RS06735 at 409.444 kb on - strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.537 kb on + strand, within HMPREF1058_RS06735 at 409.545 kb on - strand at 409.545 kb on - strand at 409.556 kb on + strand at 409.557 kb on - strand at 409.557 kb on - strand at 409.593 kb on - strand at 409.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 406,622 + HMPREF1058_RS06745 0.62 +1.5 406,622 + HMPREF1058_RS06745 0.62 -0.1 406,632 + HMPREF1058_RS06745 0.63 -1.1 406,659 + HMPREF1058_RS06745 0.66 -0.4 406,673 - HMPREF1058_RS06745 0.67 +0.2 406,675 + HMPREF1058_RS06745 0.67 +0.2 406,675 + HMPREF1058_RS06745 0.67 -0.3 406,761 + HMPREF1058_RS06745 0.76 -1.0 406,802 - HMPREF1058_RS06745 0.81 +0.0 407,033 - +0.6 407,088 - -0.4 407,171 + -0.0 407,219 + -0.3 407,250 - +0.4 407,462 + -0.3 407,463 - -0.1 407,463 - -1.5 407,466 + +0.0 407,466 + +0.1 407,466 + +0.5 407,467 - -0.5 407,484 + -0.3 407,484 + +0.1 407,484 + -0.7 407,485 - +0.9 407,489 - +0.4 407,517 + -0.4 407,517 + -0.7 407,518 - +0.2 407,518 - -0.4 407,643 + +1.6 407,720 - HMPREF1058_RS06740 0.10 +2.5 407,735 + HMPREF1058_RS06740 0.12 +0.3 407,833 + HMPREF1058_RS06740 0.20 +1.3 407,833 + HMPREF1058_RS06740 0.20 +1.5 407,833 + HMPREF1058_RS06740 0.20 +0.8 407,834 - HMPREF1058_RS06740 0.20 +1.0 407,874 - HMPREF1058_RS06740 0.23 +0.5 407,925 + HMPREF1058_RS06740 0.28 +1.5 407,946 + HMPREF1058_RS06740 0.30 +1.0 407,947 - HMPREF1058_RS06740 0.30 +0.9 408,039 - HMPREF1058_RS06740 0.37 +1.2 408,068 + HMPREF1058_RS06740 0.40 +0.7 408,069 - HMPREF1058_RS06740 0.40 +0.2 408,132 + HMPREF1058_RS06740 0.45 +0.4 408,133 - HMPREF1058_RS06740 0.45 +1.5 408,192 - HMPREF1058_RS06740 0.50 -0.7 408,192 - HMPREF1058_RS06740 0.50 +1.6 408,192 - HMPREF1058_RS06740 0.50 +0.8 408,399 - HMPREF1058_RS06740 0.68 -0.1 408,455 + HMPREF1058_RS06740 0.73 +1.3 408,473 + HMPREF1058_RS06740 0.74 +1.5 408,473 + HMPREF1058_RS06740 0.74 +1.2 408,622 - HMPREF1058_RS06740 0.87 +0.7 408,647 + HMPREF1058_RS06740 0.89 +1.3 408,650 - HMPREF1058_RS06740 0.89 -1.7 408,685 + -2.3 408,706 + -1.6 408,707 - +1.2 408,717 + +0.3 408,718 - -0.6 408,718 - -1.0 408,869 - HMPREF1058_RS06735 0.12 +1.7 408,874 - HMPREF1058_RS06735 0.13 +2.8 408,874 - HMPREF1058_RS06735 0.13 +0.6 408,916 + HMPREF1058_RS06735 0.17 +1.3 408,917 - HMPREF1058_RS06735 0.18 -0.1 408,950 + HMPREF1058_RS06735 0.21 -0.5 409,053 + HMPREF1058_RS06735 0.33 +2.7 409,053 + HMPREF1058_RS06735 0.33 +1.7 409,070 - HMPREF1058_RS06735 0.35 +0.6 409,157 + HMPREF1058_RS06735 0.45 +0.3 409,158 - HMPREF1058_RS06735 0.45 +1.0 409,444 - HMPREF1058_RS06735 0.79 +0.2 409,445 + HMPREF1058_RS06735 0.79 +1.2 409,445 + HMPREF1058_RS06735 0.79 +1.5 409,446 - HMPREF1058_RS06735 0.79 +0.2 409,446 - HMPREF1058_RS06735 0.79 +1.6 409,537 + HMPREF1058_RS06735 0.89 +2.9 409,545 - +0.9 409,545 - +0.9 409,556 + +0.4 409,557 - +0.2 409,557 - +1.0 409,593 - +1.6 409,684 + +0.8
Or see this region's nucleotide sequence