Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06740 and HMPREF1058_RS06735 overlap by 14 nucleotides HMPREF1058_RS06735 and HMPREF1058_RS06730 are separated by 13 nucleotides HMPREF1058_RS06730 and HMPREF1058_RS06725 are separated by 15 nucleotides HMPREF1058_RS06725 and HMPREF1058_RS06720 are separated by 20 nucleotides
HMPREF1058_RS06740: HMPREF1058_RS06740 - glycosyltransferase, at 407,597 to 408,778
_RS06740
HMPREF1058_RS06735: HMPREF1058_RS06735 - ABC transporter permease, at 408,765 to 409,628
_RS06735
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
HMPREF1058_RS06725: HMPREF1058_RS06725 - glycosyl transferase, at 410,929 to 411,846
_RS06725
HMPREF1058_RS06720: HMPREF1058_RS06720 - glycosyltransferase, at 411,867 to 412,682
_RS06720
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 408.647 kb on + strand, within HMPREF1058_RS06740 at 408.650 kb on - strand, within HMPREF1058_RS06740 at 408.685 kb on + strand at 408.706 kb on + strand at 408.707 kb on - strand at 408.717 kb on + strand at 408.718 kb on - strand at 408.718 kb on - strand at 408.869 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.916 kb on + strand, within HMPREF1058_RS06735 at 408.917 kb on - strand, within HMPREF1058_RS06735 at 408.950 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.070 kb on - strand, within HMPREF1058_RS06735 at 409.157 kb on + strand, within HMPREF1058_RS06735 at 409.158 kb on - strand, within HMPREF1058_RS06735 at 409.444 kb on - strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.537 kb on + strand, within HMPREF1058_RS06735 at 409.545 kb on - strand at 409.545 kb on - strand at 409.556 kb on + strand at 409.557 kb on - strand at 409.557 kb on - strand at 409.593 kb on - strand at 409.684 kb on + strand at 409.843 kb on - strand, within HMPREF1058_RS06730 at 409.875 kb on + strand, within HMPREF1058_RS06730 at 409.878 kb on + strand, within HMPREF1058_RS06730 at 409.879 kb on - strand, within HMPREF1058_RS06730 at 409.880 kb on + strand, within HMPREF1058_RS06730 at 409.880 kb on + strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 410.032 kb on - strand, within HMPREF1058_RS06730 at 410.035 kb on + strand, within HMPREF1058_RS06730 at 410.036 kb on - strand, within HMPREF1058_RS06730 at 410.037 kb on + strand, within HMPREF1058_RS06730 at 410.322 kb on + strand, within HMPREF1058_RS06730 at 410.322 kb on + strand, within HMPREF1058_RS06730 at 410.460 kb on - strand, within HMPREF1058_RS06730 at 410.464 kb on + strand, within HMPREF1058_RS06730 at 410.464 kb on + strand, within HMPREF1058_RS06730 at 410.465 kb on - strand, within HMPREF1058_RS06730 at 410.495 kb on + strand, within HMPREF1058_RS06730 at 410.495 kb on + strand, within HMPREF1058_RS06730 at 410.602 kb on + strand, within HMPREF1058_RS06730 at 410.602 kb on + strand, within HMPREF1058_RS06730 at 410.603 kb on - strand, within HMPREF1058_RS06730 at 410.603 kb on - strand, within HMPREF1058_RS06730 at 410.609 kb on + strand, within HMPREF1058_RS06730 at 410.609 kb on + strand, within HMPREF1058_RS06730 at 410.610 kb on - strand, within HMPREF1058_RS06730 at 410.690 kb on + strand, within HMPREF1058_RS06730 at 410.774 kb on + strand, within HMPREF1058_RS06730 at 410.785 kb on - strand, within HMPREF1058_RS06730 at 410.925 kb on + strand at 410.925 kb on + strand at 410.955 kb on - strand at 411.026 kb on - strand, within HMPREF1058_RS06725 at 411.094 kb on + strand at 411.095 kb on - strand, within HMPREF1058_RS06725 at 411.145 kb on - strand, within HMPREF1058_RS06725 at 411.151 kb on + strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.217 kb on - strand, within HMPREF1058_RS06725 at 411.223 kb on + strand, within HMPREF1058_RS06725 at 411.225 kb on + strand, within HMPREF1058_RS06725 at 411.234 kb on + strand, within HMPREF1058_RS06725 at 411.240 kb on - strand, within HMPREF1058_RS06725 at 411.241 kb on + strand, within HMPREF1058_RS06725 at 411.242 kb on - strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.428 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.438 kb on - strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.463 kb on - strand, within HMPREF1058_RS06725 at 411.467 kb on + strand, within HMPREF1058_RS06725 at 411.468 kb on - strand, within HMPREF1058_RS06725 at 411.534 kb on + strand, within HMPREF1058_RS06725 at 411.558 kb on + strand, within HMPREF1058_RS06725 at 411.673 kb on - strand, within HMPREF1058_RS06725 at 411.694 kb on + strand, within HMPREF1058_RS06725 at 411.695 kb on - strand, within HMPREF1058_RS06725 at 411.696 kb on + strand, within HMPREF1058_RS06725 at 411.797 kb on - strand at 411.891 kb on - strand at 411.904 kb on - strand at 411.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 408,647 + HMPREF1058_RS06740 0.89 +1.3 408,650 - HMPREF1058_RS06740 0.89 -1.7 408,685 + -2.3 408,706 + -1.6 408,707 - +1.2 408,717 + +0.3 408,718 - -0.6 408,718 - -1.0 408,869 - HMPREF1058_RS06735 0.12 +1.7 408,874 - HMPREF1058_RS06735 0.13 +2.8 408,874 - HMPREF1058_RS06735 0.13 +0.6 408,916 + HMPREF1058_RS06735 0.17 +1.3 408,917 - HMPREF1058_RS06735 0.18 -0.1 408,950 + HMPREF1058_RS06735 0.21 -0.5 409,053 + HMPREF1058_RS06735 0.33 +2.7 409,053 + HMPREF1058_RS06735 0.33 +1.7 409,070 - HMPREF1058_RS06735 0.35 +0.6 409,157 + HMPREF1058_RS06735 0.45 +0.3 409,158 - HMPREF1058_RS06735 0.45 +1.0 409,444 - HMPREF1058_RS06735 0.79 +0.2 409,445 + HMPREF1058_RS06735 0.79 +1.2 409,445 + HMPREF1058_RS06735 0.79 +1.5 409,446 - HMPREF1058_RS06735 0.79 +0.2 409,446 - HMPREF1058_RS06735 0.79 +1.6 409,537 + HMPREF1058_RS06735 0.89 +2.9 409,545 - +0.9 409,545 - +0.9 409,556 + +0.4 409,557 - +0.2 409,557 - +1.0 409,593 - +1.6 409,684 + +0.8 409,843 - HMPREF1058_RS06730 0.16 -1.0 409,875 + HMPREF1058_RS06730 0.18 +1.2 409,878 + HMPREF1058_RS06730 0.19 +1.8 409,879 - HMPREF1058_RS06730 0.19 +1.9 409,880 + HMPREF1058_RS06730 0.19 +0.7 409,880 + HMPREF1058_RS06730 0.19 +0.2 409,881 - HMPREF1058_RS06730 0.19 -0.2 409,881 - HMPREF1058_RS06730 0.19 +0.2 409,881 - HMPREF1058_RS06730 0.19 +0.0 409,884 + HMPREF1058_RS06730 0.19 -0.1 409,884 + HMPREF1058_RS06730 0.19 -0.5 409,884 + HMPREF1058_RS06730 0.19 +3.2 410,032 - HMPREF1058_RS06730 0.31 +2.1 410,035 + HMPREF1058_RS06730 0.31 +1.5 410,036 - HMPREF1058_RS06730 0.31 +0.8 410,037 + HMPREF1058_RS06730 0.31 -0.6 410,322 + HMPREF1058_RS06730 0.53 +1.5 410,322 + HMPREF1058_RS06730 0.53 +0.2 410,460 - HMPREF1058_RS06730 0.64 -0.1 410,464 + HMPREF1058_RS06730 0.65 +2.1 410,464 + HMPREF1058_RS06730 0.65 -0.4 410,465 - HMPREF1058_RS06730 0.65 +0.6 410,495 + HMPREF1058_RS06730 0.67 +2.0 410,495 + HMPREF1058_RS06730 0.67 +2.2 410,602 + HMPREF1058_RS06730 0.75 +1.3 410,602 + HMPREF1058_RS06730 0.75 +0.8 410,603 - HMPREF1058_RS06730 0.76 +1.7 410,603 - HMPREF1058_RS06730 0.76 +0.5 410,609 + HMPREF1058_RS06730 0.76 +0.7 410,609 + HMPREF1058_RS06730 0.76 +1.4 410,610 - HMPREF1058_RS06730 0.76 +0.9 410,690 + HMPREF1058_RS06730 0.82 -0.6 410,774 + HMPREF1058_RS06730 0.89 +0.7 410,785 - HMPREF1058_RS06730 0.90 +0.4 410,925 + -0.7 410,925 + -0.1 410,955 - +0.6 411,026 - HMPREF1058_RS06725 0.11 +2.1 411,094 + +1.6 411,095 - HMPREF1058_RS06725 0.18 +0.2 411,145 - HMPREF1058_RS06725 0.24 +1.2 411,151 + HMPREF1058_RS06725 0.24 +0.6 411,181 - HMPREF1058_RS06725 0.27 +2.0 411,181 - HMPREF1058_RS06725 0.27 +2.4 411,217 - HMPREF1058_RS06725 0.31 +0.4 411,223 + HMPREF1058_RS06725 0.32 +1.6 411,225 + HMPREF1058_RS06725 0.32 +1.5 411,234 + HMPREF1058_RS06725 0.33 +1.2 411,240 - HMPREF1058_RS06725 0.34 +1.2 411,241 + HMPREF1058_RS06725 0.34 +0.0 411,242 - HMPREF1058_RS06725 0.34 +0.6 411,269 + HMPREF1058_RS06725 0.37 +1.0 411,269 + HMPREF1058_RS06725 0.37 +0.8 411,269 + HMPREF1058_RS06725 0.37 -0.1 411,428 + HMPREF1058_RS06725 0.54 +1.0 411,437 + HMPREF1058_RS06725 0.55 +0.8 411,437 + HMPREF1058_RS06725 0.55 -0.6 411,437 + HMPREF1058_RS06725 0.55 +0.8 411,438 - HMPREF1058_RS06725 0.55 +1.1 411,443 + HMPREF1058_RS06725 0.56 +0.5 411,443 + HMPREF1058_RS06725 0.56 +1.2 411,443 + HMPREF1058_RS06725 0.56 +0.0 411,444 - HMPREF1058_RS06725 0.56 +1.5 411,444 - HMPREF1058_RS06725 0.56 +1.5 411,448 - HMPREF1058_RS06725 0.57 +1.3 411,448 - HMPREF1058_RS06725 0.57 -1.5 411,449 + HMPREF1058_RS06725 0.57 -0.4 411,449 + HMPREF1058_RS06725 0.57 +0.3 411,449 + HMPREF1058_RS06725 0.57 +0.1 411,463 - HMPREF1058_RS06725 0.58 -0.2 411,467 + HMPREF1058_RS06725 0.59 +1.5 411,468 - HMPREF1058_RS06725 0.59 +0.0 411,534 + HMPREF1058_RS06725 0.66 +1.2 411,558 + HMPREF1058_RS06725 0.69 +0.4 411,673 - HMPREF1058_RS06725 0.81 +0.3 411,694 + HMPREF1058_RS06725 0.83 +0.6 411,695 - HMPREF1058_RS06725 0.83 -0.2 411,696 + HMPREF1058_RS06725 0.84 +0.2 411,797 - +1.6 411,891 - +0.7 411,904 - -0.6 411,906 - +1.0
Or see this region's nucleotide sequence