Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06730 and HMPREF1058_RS06725 are separated by 15 nucleotides HMPREF1058_RS06725 and HMPREF1058_RS06720 are separated by 20 nucleotides HMPREF1058_RS06720 and HMPREF1058_RS06715 are separated by 17 nucleotides HMPREF1058_RS06715 and HMPREF1058_RS06710 are separated by 3 nucleotides
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
HMPREF1058_RS06725: HMPREF1058_RS06725 - glycosyl transferase, at 410,929 to 411,846
_RS06725
HMPREF1058_RS06720: HMPREF1058_RS06720 - glycosyltransferase, at 411,867 to 412,682
_RS06720
HMPREF1058_RS06715: HMPREF1058_RS06715 - glycosyltransferase, at 412,700 to 413,647
_RS06715
HMPREF1058_RS06710: HMPREF1058_RS06710 - DUF4422 domain-containing protein, at 413,651 to 414,475
_RS06710
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1
2 at 410.925 kb on + strand at 410.925 kb on + strand at 410.955 kb on - strand at 411.026 kb on - strand, within HMPREF1058_RS06725 at 411.094 kb on + strand at 411.095 kb on - strand, within HMPREF1058_RS06725 at 411.145 kb on - strand, within HMPREF1058_RS06725 at 411.151 kb on + strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.217 kb on - strand, within HMPREF1058_RS06725 at 411.223 kb on + strand, within HMPREF1058_RS06725 at 411.225 kb on + strand, within HMPREF1058_RS06725 at 411.234 kb on + strand, within HMPREF1058_RS06725 at 411.240 kb on - strand, within HMPREF1058_RS06725 at 411.241 kb on + strand, within HMPREF1058_RS06725 at 411.242 kb on - strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.428 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.438 kb on - strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.463 kb on - strand, within HMPREF1058_RS06725 at 411.467 kb on + strand, within HMPREF1058_RS06725 at 411.468 kb on - strand, within HMPREF1058_RS06725 at 411.534 kb on + strand, within HMPREF1058_RS06725 at 411.558 kb on + strand, within HMPREF1058_RS06725 at 411.673 kb on - strand, within HMPREF1058_RS06725 at 411.694 kb on + strand, within HMPREF1058_RS06725 at 411.695 kb on - strand, within HMPREF1058_RS06725 at 411.696 kb on + strand, within HMPREF1058_RS06725 at 411.797 kb on - strand at 411.891 kb on - strand at 411.904 kb on - strand at 411.906 kb on - strand at 411.974 kb on + strand, within HMPREF1058_RS06720 at 412.026 kb on + strand, within HMPREF1058_RS06720 at 412.074 kb on + strand, within HMPREF1058_RS06720 at 412.074 kb on + strand, within HMPREF1058_RS06720 at 412.074 kb on + strand, within HMPREF1058_RS06720 at 412.075 kb on - strand, within HMPREF1058_RS06720 at 412.075 kb on - strand, within HMPREF1058_RS06720 at 412.075 kb on - strand, within HMPREF1058_RS06720 at 412.150 kb on - strand, within HMPREF1058_RS06720 at 412.255 kb on + strand, within HMPREF1058_RS06720 at 412.374 kb on + strand, within HMPREF1058_RS06720 at 412.415 kb on + strand, within HMPREF1058_RS06720 at 412.500 kb on + strand, within HMPREF1058_RS06720 at 412.500 kb on + strand at 412.501 kb on - strand, within HMPREF1058_RS06720 at 412.536 kb on + strand, within HMPREF1058_RS06720 at 412.536 kb on + strand, within HMPREF1058_RS06720 at 412.537 kb on - strand, within HMPREF1058_RS06720 at 412.539 kb on - strand, within HMPREF1058_RS06720 at 412.541 kb on - strand, within HMPREF1058_RS06720 at 412.620 kb on + strand at 412.661 kb on - strand at 412.680 kb on + strand at 412.723 kb on + strand at 412.739 kb on + strand at 412.751 kb on + strand at 412.775 kb on + strand at 412.776 kb on - strand at 412.776 kb on - strand at 412.776 kb on - strand at 412.776 kb on - strand at 412.777 kb on + strand at 412.779 kb on + strand at 412.852 kb on - strand, within HMPREF1058_RS06715 at 412.852 kb on - strand, within HMPREF1058_RS06715 at 412.895 kb on + strand, within HMPREF1058_RS06715 at 412.900 kb on + strand, within HMPREF1058_RS06715 at 412.901 kb on - strand, within HMPREF1058_RS06715 at 412.903 kb on - strand, within HMPREF1058_RS06715 at 412.974 kb on + strand, within HMPREF1058_RS06715 at 413.044 kb on - strand, within HMPREF1058_RS06715 at 413.103 kb on + strand, within HMPREF1058_RS06715 at 413.154 kb on + strand, within HMPREF1058_RS06715 at 413.395 kb on + strand, within HMPREF1058_RS06715 at 413.395 kb on + strand, within HMPREF1058_RS06715 at 413.395 kb on + strand, within HMPREF1058_RS06715 at 413.396 kb on - strand, within HMPREF1058_RS06715 at 413.397 kb on + strand, within HMPREF1058_RS06715 at 413.398 kb on - strand, within HMPREF1058_RS06715 at 413.462 kb on + strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.472 kb on - strand, within HMPREF1058_RS06715 at 413.611 kb on + strand at 413.616 kb on + strand at 413.616 kb on + strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.647 kb on + strand at 413.675 kb on - strand at 413.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 410,925 + -0.7 410,925 + -0.1 410,955 - +0.6 411,026 - HMPREF1058_RS06725 0.11 +2.1 411,094 + +1.6 411,095 - HMPREF1058_RS06725 0.18 +0.2 411,145 - HMPREF1058_RS06725 0.24 +1.2 411,151 + HMPREF1058_RS06725 0.24 +0.6 411,181 - HMPREF1058_RS06725 0.27 +2.0 411,181 - HMPREF1058_RS06725 0.27 +2.4 411,217 - HMPREF1058_RS06725 0.31 +0.4 411,223 + HMPREF1058_RS06725 0.32 +1.6 411,225 + HMPREF1058_RS06725 0.32 +1.5 411,234 + HMPREF1058_RS06725 0.33 +1.2 411,240 - HMPREF1058_RS06725 0.34 +1.2 411,241 + HMPREF1058_RS06725 0.34 +0.0 411,242 - HMPREF1058_RS06725 0.34 +0.6 411,269 + HMPREF1058_RS06725 0.37 +1.0 411,269 + HMPREF1058_RS06725 0.37 +0.8 411,269 + HMPREF1058_RS06725 0.37 -0.1 411,428 + HMPREF1058_RS06725 0.54 +1.0 411,437 + HMPREF1058_RS06725 0.55 +0.8 411,437 + HMPREF1058_RS06725 0.55 -0.6 411,437 + HMPREF1058_RS06725 0.55 +0.8 411,438 - HMPREF1058_RS06725 0.55 +1.1 411,443 + HMPREF1058_RS06725 0.56 +0.5 411,443 + HMPREF1058_RS06725 0.56 +1.2 411,443 + HMPREF1058_RS06725 0.56 +0.0 411,444 - HMPREF1058_RS06725 0.56 +1.5 411,444 - HMPREF1058_RS06725 0.56 +1.5 411,448 - HMPREF1058_RS06725 0.57 +1.3 411,448 - HMPREF1058_RS06725 0.57 -1.5 411,449 + HMPREF1058_RS06725 0.57 -0.4 411,449 + HMPREF1058_RS06725 0.57 +0.3 411,449 + HMPREF1058_RS06725 0.57 +0.1 411,463 - HMPREF1058_RS06725 0.58 -0.2 411,467 + HMPREF1058_RS06725 0.59 +1.5 411,468 - HMPREF1058_RS06725 0.59 +0.0 411,534 + HMPREF1058_RS06725 0.66 +1.2 411,558 + HMPREF1058_RS06725 0.69 +0.4 411,673 - HMPREF1058_RS06725 0.81 +0.3 411,694 + HMPREF1058_RS06725 0.83 +0.6 411,695 - HMPREF1058_RS06725 0.83 -0.2 411,696 + HMPREF1058_RS06725 0.84 +0.2 411,797 - +1.6 411,891 - +0.7 411,904 - -0.6 411,906 - +1.0 411,974 + HMPREF1058_RS06720 0.13 +1.3 412,026 + HMPREF1058_RS06720 0.19 +1.1 412,074 + HMPREF1058_RS06720 0.25 +1.1 412,074 + HMPREF1058_RS06720 0.25 -0.4 412,074 + HMPREF1058_RS06720 0.25 +1.5 412,075 - HMPREF1058_RS06720 0.25 +0.5 412,075 - HMPREF1058_RS06720 0.25 +2.1 412,075 - HMPREF1058_RS06720 0.25 -0.1 412,150 - HMPREF1058_RS06720 0.35 +0.5 412,255 + HMPREF1058_RS06720 0.48 +0.8 412,374 + HMPREF1058_RS06720 0.62 +0.7 412,415 + HMPREF1058_RS06720 0.67 +1.2 412,500 + HMPREF1058_RS06720 0.78 +1.0 412,500 + -0.6 412,501 - HMPREF1058_RS06720 0.78 -0.8 412,536 + HMPREF1058_RS06720 0.82 -1.3 412,536 + HMPREF1058_RS06720 0.82 +1.3 412,537 - HMPREF1058_RS06720 0.82 +0.4 412,539 - HMPREF1058_RS06720 0.82 +0.3 412,541 - HMPREF1058_RS06720 0.83 +0.6 412,620 + +1.4 412,661 - +1.7 412,680 + +1.3 412,723 + +1.0 412,739 + +1.5 412,751 + +0.7 412,775 + +0.5 412,776 - -0.9 412,776 - +0.6 412,776 - +1.0 412,776 - -1.1 412,777 + -0.7 412,779 + +0.5 412,852 - HMPREF1058_RS06715 0.16 +0.6 412,852 - HMPREF1058_RS06715 0.16 +1.2 412,895 + HMPREF1058_RS06715 0.21 +0.1 412,900 + HMPREF1058_RS06715 0.21 +0.9 412,901 - HMPREF1058_RS06715 0.21 +1.9 412,903 - HMPREF1058_RS06715 0.21 -0.3 412,974 + HMPREF1058_RS06715 0.29 -0.8 413,044 - HMPREF1058_RS06715 0.36 -0.6 413,103 + HMPREF1058_RS06715 0.43 -0.2 413,154 + HMPREF1058_RS06715 0.48 +0.9 413,395 + HMPREF1058_RS06715 0.73 +1.2 413,395 + HMPREF1058_RS06715 0.73 +1.5 413,395 + HMPREF1058_RS06715 0.73 -0.5 413,396 - HMPREF1058_RS06715 0.73 -0.4 413,397 + HMPREF1058_RS06715 0.74 +0.6 413,398 - HMPREF1058_RS06715 0.74 -1.8 413,462 + HMPREF1058_RS06715 0.80 +0.5 413,463 - HMPREF1058_RS06715 0.80 +0.4 413,463 - HMPREF1058_RS06715 0.80 -0.3 413,472 - HMPREF1058_RS06715 0.81 +0.1 413,611 + -0.1 413,616 + +0.2 413,616 + -0.1 413,617 - +0.5 413,617 - -1.1 413,617 - +0.8 413,617 - -0.0 413,617 - +0.9 413,617 - +2.7 413,647 + -0.0 413,675 - +1.8 413,675 - +0.2
Or see this region's nucleotide sequence