Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06710

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06720 and HMPREF1058_RS06715 are separated by 17 nucleotidesHMPREF1058_RS06715 and HMPREF1058_RS06710 are separated by 3 nucleotidesHMPREF1058_RS06710 and HMPREF1058_RS06705 overlap by 16 nucleotidesHMPREF1058_RS06705 and HMPREF1058_RS06700 are separated by 4 nucleotides HMPREF1058_RS06720: HMPREF1058_RS06720 - glycosyltransferase, at 411,867 to 412,682 _RS06720 HMPREF1058_RS06715: HMPREF1058_RS06715 - glycosyltransferase, at 412,700 to 413,647 _RS06715 HMPREF1058_RS06710: HMPREF1058_RS06710 - DUF4422 domain-containing protein, at 413,651 to 414,475 _RS06710 HMPREF1058_RS06705: HMPREF1058_RS06705 - acyltransferase, at 414,460 to 415,071 _RS06705 HMPREF1058_RS06700: HMPREF1058_RS06700 - glycosyltransferase family 2 protein, at 415,076 to 416,236 _RS06700 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1 2at 412.661 kb on - strandat 412.680 kb on + strandat 412.723 kb on + strandat 412.739 kb on + strandat 412.751 kb on + strandat 412.775 kb on + strandat 412.776 kb on - strandat 412.776 kb on - strandat 412.776 kb on - strandat 412.776 kb on - strandat 412.777 kb on + strandat 412.779 kb on + strandat 412.852 kb on - strand, within HMPREF1058_RS06715at 412.852 kb on - strand, within HMPREF1058_RS06715at 412.895 kb on + strand, within HMPREF1058_RS06715at 412.900 kb on + strand, within HMPREF1058_RS06715at 412.901 kb on - strand, within HMPREF1058_RS06715at 412.903 kb on - strand, within HMPREF1058_RS06715at 412.974 kb on + strand, within HMPREF1058_RS06715at 413.044 kb on - strand, within HMPREF1058_RS06715at 413.103 kb on + strand, within HMPREF1058_RS06715at 413.154 kb on + strand, within HMPREF1058_RS06715at 413.395 kb on + strand, within HMPREF1058_RS06715at 413.395 kb on + strand, within HMPREF1058_RS06715at 413.395 kb on + strand, within HMPREF1058_RS06715at 413.396 kb on - strand, within HMPREF1058_RS06715at 413.397 kb on + strand, within HMPREF1058_RS06715at 413.398 kb on - strand, within HMPREF1058_RS06715at 413.462 kb on + strand, within HMPREF1058_RS06715at 413.463 kb on - strand, within HMPREF1058_RS06715at 413.463 kb on - strand, within HMPREF1058_RS06715at 413.472 kb on - strand, within HMPREF1058_RS06715at 413.611 kb on + strandat 413.616 kb on + strandat 413.616 kb on + strandat 413.617 kb on - strandat 413.617 kb on - strandat 413.617 kb on - strandat 413.617 kb on - strandat 413.617 kb on - strandat 413.617 kb on - strandat 413.647 kb on + strandat 413.675 kb on - strandat 413.675 kb on - strandat 413.702 kb on - strandat 413.760 kb on + strand, within HMPREF1058_RS06710at 413.784 kb on - strand, within HMPREF1058_RS06710at 413.813 kb on + strand, within HMPREF1058_RS06710at 413.932 kb on + strand, within HMPREF1058_RS06710at 413.939 kb on - strand, within HMPREF1058_RS06710at 413.939 kb on - strand, within HMPREF1058_RS06710at 413.939 kb on - strand, within HMPREF1058_RS06710at 413.941 kb on + strand, within HMPREF1058_RS06710at 413.941 kb on + strand, within HMPREF1058_RS06710at 414.064 kb on - strand, within HMPREF1058_RS06710at 414.125 kb on + strand, within HMPREF1058_RS06710at 414.176 kb on - strand, within HMPREF1058_RS06710at 414.177 kb on - strand, within HMPREF1058_RS06710at 414.259 kb on + strand, within HMPREF1058_RS06710at 414.333 kb on - strand, within HMPREF1058_RS06710at 414.333 kb on - strand, within HMPREF1058_RS06710at 414.334 kb on + strand, within HMPREF1058_RS06710at 414.334 kb on + strand, within HMPREF1058_RS06710at 414.334 kb on + strand, within HMPREF1058_RS06710at 414.338 kb on - strand, within HMPREF1058_RS06710at 414.349 kb on + strand, within HMPREF1058_RS06710at 414.354 kb on - strand, within HMPREF1058_RS06710at 414.450 kb on - strandat 414.492 kb on + strandat 414.536 kb on + strand, within HMPREF1058_RS06705at 414.545 kb on - strand, within HMPREF1058_RS06705at 414.610 kb on + strand, within HMPREF1058_RS06705at 414.629 kb on - strand, within HMPREF1058_RS06705at 414.636 kb on + strand, within HMPREF1058_RS06705at 414.636 kb on + strand, within HMPREF1058_RS06705at 414.636 kb on + strandat 414.636 kb on + strand, within HMPREF1058_RS06705at 414.637 kb on - strand, within HMPREF1058_RS06705at 414.637 kb on - strand, within HMPREF1058_RS06705at 414.715 kb on + strand, within HMPREF1058_RS06705at 414.730 kb on + strand, within HMPREF1058_RS06705at 414.924 kb on - strand, within HMPREF1058_RS06705at 414.954 kb on - strand, within HMPREF1058_RS06705at 415.051 kb on + strandat 415.052 kb on - strandat 415.063 kb on + strandat 415.064 kb on - strandat 415.156 kb on - strandat 415.185 kb on + strandat 415.185 kb on + strandat 415.185 kb on + strandat 415.189 kb on + strandat 415.189 kb on + strandat 415.218 kb on + strand, within HMPREF1058_RS06700at 415.221 kb on - strand, within HMPREF1058_RS06700at 415.240 kb on + strand, within HMPREF1058_RS06700at 415.402 kb on + strand, within HMPREF1058_RS06700

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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412,661 - +1.7
412,680 + +1.3
412,723 + +1.0
412,739 + +1.5
412,751 + +0.7
412,775 + +0.5
412,776 - -0.9
412,776 - +0.6
412,776 - +1.0
412,776 - -1.1
412,777 + -0.7
412,779 + +0.5
412,852 - HMPREF1058_RS06715 0.16 +0.6
412,852 - HMPREF1058_RS06715 0.16 +1.2
412,895 + HMPREF1058_RS06715 0.21 +0.1
412,900 + HMPREF1058_RS06715 0.21 +0.9
412,901 - HMPREF1058_RS06715 0.21 +1.9
412,903 - HMPREF1058_RS06715 0.21 -0.3
412,974 + HMPREF1058_RS06715 0.29 -0.8
413,044 - HMPREF1058_RS06715 0.36 -0.6
413,103 + HMPREF1058_RS06715 0.43 -0.2
413,154 + HMPREF1058_RS06715 0.48 +0.9
413,395 + HMPREF1058_RS06715 0.73 +1.2
413,395 + HMPREF1058_RS06715 0.73 +1.5
413,395 + HMPREF1058_RS06715 0.73 -0.5
413,396 - HMPREF1058_RS06715 0.73 -0.4
413,397 + HMPREF1058_RS06715 0.74 +0.6
413,398 - HMPREF1058_RS06715 0.74 -1.8
413,462 + HMPREF1058_RS06715 0.80 +0.5
413,463 - HMPREF1058_RS06715 0.80 +0.4
413,463 - HMPREF1058_RS06715 0.80 -0.3
413,472 - HMPREF1058_RS06715 0.81 +0.1
413,611 + -0.1
413,616 + +0.2
413,616 + -0.1
413,617 - +0.5
413,617 - -1.1
413,617 - +0.8
413,617 - -0.0
413,617 - +0.9
413,617 - +2.7
413,647 + -0.0
413,675 - +1.8
413,675 - +0.2
413,702 - +1.0
413,760 + HMPREF1058_RS06710 0.13 +0.8
413,784 - HMPREF1058_RS06710 0.16 -1.3
413,813 + HMPREF1058_RS06710 0.20 +0.9
413,932 + HMPREF1058_RS06710 0.34 +0.6
413,939 - HMPREF1058_RS06710 0.35 +0.9
413,939 - HMPREF1058_RS06710 0.35 +0.8
413,939 - HMPREF1058_RS06710 0.35 -0.2
413,941 + HMPREF1058_RS06710 0.35 +1.8
413,941 + HMPREF1058_RS06710 0.35 -1.6
414,064 - HMPREF1058_RS06710 0.50 +0.3
414,125 + HMPREF1058_RS06710 0.57 +0.7
414,176 - HMPREF1058_RS06710 0.64 +1.0
414,177 - HMPREF1058_RS06710 0.64 -0.6
414,259 + HMPREF1058_RS06710 0.74 +0.3
414,333 - HMPREF1058_RS06710 0.83 +1.1
414,333 - HMPREF1058_RS06710 0.83 +1.2
414,334 + HMPREF1058_RS06710 0.83 +2.0
414,334 + HMPREF1058_RS06710 0.83 +1.6
414,334 + HMPREF1058_RS06710 0.83 +0.5
414,338 - HMPREF1058_RS06710 0.83 +0.9
414,349 + HMPREF1058_RS06710 0.85 +1.5
414,354 - HMPREF1058_RS06710 0.85 +1.1
414,450 - +1.5
414,492 + +0.6
414,536 + HMPREF1058_RS06705 0.12 +0.4
414,545 - HMPREF1058_RS06705 0.14 +0.3
414,610 + HMPREF1058_RS06705 0.25 +0.9
414,629 - HMPREF1058_RS06705 0.28 +0.4
414,636 + HMPREF1058_RS06705 0.29 -1.0
414,636 + HMPREF1058_RS06705 0.29 -2.6
414,636 + +1.5
414,636 + HMPREF1058_RS06705 0.29 +0.1
414,637 - HMPREF1058_RS06705 0.29 +1.2
414,637 - HMPREF1058_RS06705 0.29 +0.9
414,715 + HMPREF1058_RS06705 0.42 +0.7
414,730 + HMPREF1058_RS06705 0.44 -0.8
414,924 - HMPREF1058_RS06705 0.76 +0.6
414,954 - HMPREF1058_RS06705 0.81 -0.3
415,051 + -1.3
415,052 - -0.3
415,063 + -0.0
415,064 - +0.1
415,156 - -0.2
415,185 + -0.1
415,185 + +0.4
415,185 + -0.1
415,189 + +0.4
415,189 + +1.6
415,218 + HMPREF1058_RS06700 0.12 +0.2
415,221 - HMPREF1058_RS06700 0.12 +0.3
415,240 + HMPREF1058_RS06700 0.14 -0.1
415,402 + HMPREF1058_RS06700 0.28 -0.3

Or see this region's nucleotide sequence