Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06515 and HMPREF1058_RS06510 are separated by 2 nucleotides HMPREF1058_RS06510 and HMPREF1058_RS06505 are separated by 12 nucleotides HMPREF1058_RS06505 and HMPREF1058_RS06500 are separated by 47 nucleotides
HMPREF1058_RS06515: HMPREF1058_RS06515 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 460,374 to 462,185
_RS06515
HMPREF1058_RS06510: HMPREF1058_RS06510 - ornithine cyclodeaminase, at 462,188 to 463,150
_RS06510
HMPREF1058_RS06505: HMPREF1058_RS06505 - LicD family protein, at 463,163 to 463,990
_RS06505
HMPREF1058_RS06500: HMPREF1058_RS06500 - acyltransferase, at 464,038 to 465,057
_RS06500
Position (kb) 462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 461.188 kb on - strand, within HMPREF1058_RS06515 at 461.240 kb on + strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.329 kb on - strand, within HMPREF1058_RS06515 at 461.407 kb on + strand, within HMPREF1058_RS06515 at 461.407 kb on + strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.408 kb on - strand, within HMPREF1058_RS06515 at 461.409 kb on + strand, within HMPREF1058_RS06515 at 461.415 kb on - strand, within HMPREF1058_RS06515 at 461.432 kb on + strand, within HMPREF1058_RS06515 at 461.433 kb on - strand, within HMPREF1058_RS06515 at 461.433 kb on - strand, within HMPREF1058_RS06515 at 461.624 kb on - strand, within HMPREF1058_RS06515 at 461.631 kb on - strand, within HMPREF1058_RS06515 at 461.667 kb on - strand, within HMPREF1058_RS06515 at 461.687 kb on + strand, within HMPREF1058_RS06515 at 461.705 kb on + strand, within HMPREF1058_RS06515 at 461.708 kb on - strand, within HMPREF1058_RS06515 at 461.708 kb on - strand, within HMPREF1058_RS06515 at 461.885 kb on + strand, within HMPREF1058_RS06515 at 461.902 kb on - strand, within HMPREF1058_RS06515 at 461.903 kb on + strand, within HMPREF1058_RS06515 at 461.963 kb on + strand, within HMPREF1058_RS06515 at 461.970 kb on + strand, within HMPREF1058_RS06515 at 462.000 kb on + strand, within HMPREF1058_RS06515 at 462.016 kb on + strand at 462.024 kb on - strand at 462.027 kb on + strand at 462.030 kb on - strand at 462.030 kb on - strand at 462.074 kb on - strand at 462.074 kb on - strand at 462.077 kb on + strand at 462.081 kb on - strand at 462.113 kb on + strand at 462.114 kb on - strand at 462.114 kb on - strand at 462.118 kb on + strand at 462.121 kb on + strand at 462.127 kb on + strand at 462.128 kb on - strand at 462.149 kb on + strand at 462.168 kb on - strand at 462.170 kb on - strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.172 kb on + strand at 462.223 kb on + strand at 462.223 kb on + strand at 462.223 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.225 kb on + strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.226 kb on - strand at 462.227 kb on + strand at 462.228 kb on - strand at 462.228 kb on - strand at 462.236 kb on - strand at 462.236 kb on - strand at 462.240 kb on + strand at 462.240 kb on + strand at 462.286 kb on - strand, within HMPREF1058_RS06510 at 462.286 kb on - strand, within HMPREF1058_RS06510 at 462.294 kb on + strand, within HMPREF1058_RS06510 at 462.295 kb on - strand, within HMPREF1058_RS06510 at 462.399 kb on + strand, within HMPREF1058_RS06510 at 462.400 kb on - strand, within HMPREF1058_RS06510 at 462.400 kb on - strand at 462.406 kb on + strand, within HMPREF1058_RS06510 at 462.411 kb on + strand, within HMPREF1058_RS06510 at 462.412 kb on - strand, within HMPREF1058_RS06510 at 462.452 kb on + strand, within HMPREF1058_RS06510 at 462.453 kb on - strand at 462.486 kb on + strand, within HMPREF1058_RS06510 at 462.487 kb on - strand, within HMPREF1058_RS06510 at 462.557 kb on - strand, within HMPREF1058_RS06510 at 462.572 kb on + strand, within HMPREF1058_RS06510 at 462.595 kb on + strand, within HMPREF1058_RS06510 at 462.671 kb on - strand, within HMPREF1058_RS06510 at 462.692 kb on - strand, within HMPREF1058_RS06510 at 462.693 kb on + strand, within HMPREF1058_RS06510 at 462.744 kb on + strand, within HMPREF1058_RS06510 at 462.784 kb on + strand, within HMPREF1058_RS06510 at 462.785 kb on - strand, within HMPREF1058_RS06510 at 462.826 kb on - strand, within HMPREF1058_RS06510 at 462.902 kb on + strand, within HMPREF1058_RS06510 at 462.952 kb on + strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 462.985 kb on - strand, within HMPREF1058_RS06510 at 463.031 kb on + strand, within HMPREF1058_RS06510 at 463.034 kb on - strand, within HMPREF1058_RS06510 at 463.038 kb on + strand, within HMPREF1058_RS06510 at 463.063 kb on - strand at 463.063 kb on - strand at 463.078 kb on - strand at 463.105 kb on + strand at 463.106 kb on - strand at 463.115 kb on - strand at 463.120 kb on - strand at 463.162 kb on + strand at 463.173 kb on + strand at 463.174 kb on - strand at 463.231 kb on - strand at 463.244 kb on - strand at 463.258 kb on - strand, within HMPREF1058_RS06505 at 463.258 kb on - strand, within HMPREF1058_RS06505 at 463.279 kb on - strand, within HMPREF1058_RS06505 at 463.327 kb on + strand, within HMPREF1058_RS06505 at 463.360 kb on - strand, within HMPREF1058_RS06505 at 463.457 kb on - strand, within HMPREF1058_RS06505 at 463.469 kb on - strand, within HMPREF1058_RS06505 at 463.522 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.581 kb on - strand, within HMPREF1058_RS06505 at 463.689 kb on - strand, within HMPREF1058_RS06505 at 463.691 kb on - strand, within HMPREF1058_RS06505 at 463.698 kb on + strand, within HMPREF1058_RS06505 at 463.742 kb on - strand, within HMPREF1058_RS06505 at 463.880 kb on - strand, within HMPREF1058_RS06505 at 463.897 kb on - strand, within HMPREF1058_RS06505 at 463.910 kb on + strand at 463.910 kb on + strand at 463.911 kb on - strand at 463.919 kb on + strand at 463.919 kb on + strand at 463.919 kb on + strand at 463.920 kb on - strand at 463.920 kb on - strand at 463.920 kb on - strand at 463.950 kb on + strand at 463.964 kb on + strand at 463.964 kb on + strand at 463.973 kb on + strand at 464.006 kb on - strand at 464.010 kb on - strand at 464.010 kb on - strand at 464.015 kb on + strand at 464.043 kb on + strand at 464.043 kb on + strand at 464.044 kb on - strand at 464.044 kb on - strand at 464.116 kb on - strand at 464.136 kb on - strand at 464.142 kb on + strand, within HMPREF1058_RS06500 at 464.142 kb on + strand, within HMPREF1058_RS06500 at 464.143 kb on - strand, within HMPREF1058_RS06500
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 461,188 - HMPREF1058_RS06515 0.45 +2.2 461,240 + HMPREF1058_RS06515 0.48 +1.2 461,329 - HMPREF1058_RS06515 0.53 -0.1 461,329 - HMPREF1058_RS06515 0.53 -1.7 461,407 + HMPREF1058_RS06515 0.57 -0.0 461,407 + HMPREF1058_RS06515 0.57 +1.6 461,408 - HMPREF1058_RS06515 0.57 +0.0 461,408 - HMPREF1058_RS06515 0.57 -2.2 461,408 - HMPREF1058_RS06515 0.57 -0.1 461,409 + HMPREF1058_RS06515 0.57 -0.1 461,415 - HMPREF1058_RS06515 0.57 +0.4 461,432 + HMPREF1058_RS06515 0.58 +0.6 461,433 - HMPREF1058_RS06515 0.58 -0.4 461,433 - HMPREF1058_RS06515 0.58 +0.5 461,624 - HMPREF1058_RS06515 0.69 +1.7 461,631 - HMPREF1058_RS06515 0.69 -0.5 461,667 - HMPREF1058_RS06515 0.71 -0.3 461,687 + HMPREF1058_RS06515 0.72 -0.1 461,705 + HMPREF1058_RS06515 0.73 +0.7 461,708 - HMPREF1058_RS06515 0.74 -0.8 461,708 - HMPREF1058_RS06515 0.74 +1.2 461,885 + HMPREF1058_RS06515 0.83 -1.0 461,902 - HMPREF1058_RS06515 0.84 +0.4 461,903 + HMPREF1058_RS06515 0.84 +0.8 461,963 + HMPREF1058_RS06515 0.88 +0.2 461,970 + HMPREF1058_RS06515 0.88 +0.8 462,000 + HMPREF1058_RS06515 0.90 +0.1 462,016 + +0.1 462,024 - +0.3 462,027 + -0.1 462,030 - -0.3 462,030 - +0.3 462,074 - +2.2 462,074 - -0.6 462,077 + +0.9 462,081 - -1.5 462,113 + +0.5 462,114 - -0.3 462,114 - -1.0 462,118 + +0.6 462,121 + +1.2 462,127 + +0.0 462,128 - +0.4 462,149 + +0.3 462,168 - +0.1 462,170 - -0.8 462,172 + -1.4 462,172 + -1.0 462,172 + +1.0 462,172 + +1.2 462,223 + +1.3 462,223 + +0.8 462,223 + -1.0 462,225 + +0.3 462,225 + +0.9 462,225 + +0.3 462,225 + +1.9 462,225 + +0.6 462,225 + +1.1 462,226 - +0.4 462,226 - -0.7 462,226 - -0.6 462,226 - -0.1 462,227 + +0.6 462,228 - -1.0 462,228 - +1.1 462,236 - -1.3 462,236 - -1.8 462,240 + +3.6 462,240 + +0.5 462,286 - HMPREF1058_RS06510 0.10 -0.2 462,286 - HMPREF1058_RS06510 0.10 -0.3 462,294 + HMPREF1058_RS06510 0.11 -0.5 462,295 - HMPREF1058_RS06510 0.11 +0.2 462,399 + HMPREF1058_RS06510 0.22 +1.4 462,400 - HMPREF1058_RS06510 0.22 +1.1 462,400 - -0.6 462,406 + HMPREF1058_RS06510 0.23 +0.8 462,411 + HMPREF1058_RS06510 0.23 +0.6 462,412 - HMPREF1058_RS06510 0.23 +0.3 462,452 + HMPREF1058_RS06510 0.27 +0.1 462,453 - -2.0 462,486 + HMPREF1058_RS06510 0.31 +1.4 462,487 - HMPREF1058_RS06510 0.31 -1.2 462,557 - HMPREF1058_RS06510 0.38 -2.1 462,572 + HMPREF1058_RS06510 0.40 +0.6 462,595 + HMPREF1058_RS06510 0.42 +2.2 462,671 - HMPREF1058_RS06510 0.50 -1.0 462,692 - HMPREF1058_RS06510 0.52 +0.3 462,693 + HMPREF1058_RS06510 0.52 +2.1 462,744 + HMPREF1058_RS06510 0.58 -1.4 462,784 + HMPREF1058_RS06510 0.62 +1.3 462,785 - HMPREF1058_RS06510 0.62 +0.5 462,826 - HMPREF1058_RS06510 0.66 +1.4 462,902 + HMPREF1058_RS06510 0.74 +1.3 462,952 + HMPREF1058_RS06510 0.79 +0.9 462,985 - HMPREF1058_RS06510 0.83 +0.7 462,985 - HMPREF1058_RS06510 0.83 -0.6 462,985 - HMPREF1058_RS06510 0.83 +0.3 463,031 + HMPREF1058_RS06510 0.88 -0.7 463,034 - HMPREF1058_RS06510 0.88 -0.2 463,038 + HMPREF1058_RS06510 0.88 -0.2 463,063 - -1.1 463,063 - +3.4 463,078 - +1.2 463,105 + +1.1 463,106 - +2.5 463,115 - +0.8 463,120 - +0.5 463,162 + +1.4 463,173 + -0.5 463,174 - -0.3 463,231 - +0.6 463,244 - -0.1 463,258 - HMPREF1058_RS06505 0.11 -0.5 463,258 - HMPREF1058_RS06505 0.11 -0.3 463,279 - HMPREF1058_RS06505 0.14 +1.5 463,327 + HMPREF1058_RS06505 0.20 +1.0 463,360 - HMPREF1058_RS06505 0.24 +0.9 463,457 - HMPREF1058_RS06505 0.36 -1.3 463,469 - HMPREF1058_RS06505 0.37 +0.4 463,522 + HMPREF1058_RS06505 0.43 -1.9 463,580 + HMPREF1058_RS06505 0.50 -0.8 463,580 + HMPREF1058_RS06505 0.50 -0.8 463,580 + HMPREF1058_RS06505 0.50 -0.6 463,581 - HMPREF1058_RS06505 0.50 +0.5 463,689 - HMPREF1058_RS06505 0.64 +0.6 463,691 - HMPREF1058_RS06505 0.64 -0.1 463,698 + HMPREF1058_RS06505 0.65 +0.6 463,742 - HMPREF1058_RS06505 0.70 +0.4 463,880 - HMPREF1058_RS06505 0.87 +0.5 463,897 - HMPREF1058_RS06505 0.89 -0.4 463,910 + -0.5 463,910 + +0.6 463,911 - -0.1 463,919 + -1.5 463,919 + -0.4 463,919 + -0.2 463,920 - +0.7 463,920 - -1.6 463,920 - +0.2 463,950 + +0.1 463,964 + +0.9 463,964 + -1.3 463,973 + +1.1 464,006 - +1.3 464,010 - +0.5 464,010 - +2.4 464,015 + +0.6 464,043 + -0.1 464,043 + -0.1 464,044 - -0.5 464,044 - +1.4 464,116 - +0.6 464,136 - -0.9 464,142 + HMPREF1058_RS06500 0.10 +1.1 464,142 + HMPREF1058_RS06500 0.10 +1.9 464,143 - HMPREF1058_RS06500 0.10 -0.2
Or see this region's nucleotide sequence