Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06435 and HMPREF1058_RS06430 are separated by 43 nucleotides HMPREF1058_RS06430 and HMPREF1058_RS06425 are separated by 156 nucleotides HMPREF1058_RS06425 and HMPREF1058_RS06420 are separated by 154 nucleotides HMPREF1058_RS06420 and HMPREF1058_RS06415 are separated by 39 nucleotides
HMPREF1058_RS06435: HMPREF1058_RS06435 - D-2-hydroxyacid dehydrogenase, at 480,049 to 481,005
_RS06435
HMPREF1058_RS06430: HMPREF1058_RS06430 - C-GCAxxG-C-C family protein, at 481,049 to 481,552
_RS06430
HMPREF1058_RS06425: HMPREF1058_RS06425 - winged helix-turn-helix domain-containing protein, at 481,709 to 481,912
_RS06425
HMPREF1058_RS06420: HMPREF1058_RS06420 - type II toxin-antitoxin system HicA family toxin, at 482,067 to 482,255
_RS06420
HMPREF1058_RS06415: HMPREF1058_RS06415 - antitoxin HicB, at 482,295 to 482,687
_RS06415
Position (kb) 481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.057 kb on - strand at 480.136 kb on + strand at 480.195 kb on + strand, within HMPREF1058_RS06435 at 480.250 kb on + strand, within HMPREF1058_RS06435 at 480.276 kb on + strand, within HMPREF1058_RS06435 at 480.277 kb on - strand, within HMPREF1058_RS06435 at 480.279 kb on + strand, within HMPREF1058_RS06435 at 480.329 kb on + strand, within HMPREF1058_RS06435 at 480.330 kb on - strand, within HMPREF1058_RS06435 at 480.338 kb on - strand, within HMPREF1058_RS06435 at 480.375 kb on + strand, within HMPREF1058_RS06435 at 480.377 kb on + strand, within HMPREF1058_RS06435 at 480.377 kb on + strand, within HMPREF1058_RS06435 at 480.406 kb on + strand, within HMPREF1058_RS06435 at 480.566 kb on + strand, within HMPREF1058_RS06435 at 480.566 kb on + strand, within HMPREF1058_RS06435 at 480.575 kb on - strand, within HMPREF1058_RS06435 at 480.576 kb on + strand, within HMPREF1058_RS06435 at 480.577 kb on - strand, within HMPREF1058_RS06435 at 480.720 kb on + strand, within HMPREF1058_RS06435 at 480.855 kb on + strand, within HMPREF1058_RS06435 at 480.855 kb on + strand, within HMPREF1058_RS06435 at 480.855 kb on + strand, within HMPREF1058_RS06435 at 480.856 kb on - strand, within HMPREF1058_RS06435 at 481.067 kb on - strand at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.141 kb on + strand, within HMPREF1058_RS06430 at 481.142 kb on - strand, within HMPREF1058_RS06430 at 481.142 kb on - strand, within HMPREF1058_RS06430 at 481.469 kb on + strand, within HMPREF1058_RS06430 at 481.472 kb on + strand, within HMPREF1058_RS06430 at 481.472 kb on + strand, within HMPREF1058_RS06430 at 481.575 kb on + strand at 481.626 kb on + strand at 481.861 kb on + strand, within HMPREF1058_RS06425 at 481.861 kb on + strand, within HMPREF1058_RS06425 at 481.911 kb on - strand at 481.987 kb on + strand at 481.999 kb on - strand at 482.074 kb on - strand at 482.122 kb on + strand, within HMPREF1058_RS06420 at 482.122 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.221 kb on - strand, within HMPREF1058_RS06420 at 482.221 kb on - strand, within HMPREF1058_RS06420 at 482.519 kb on + strand, within HMPREF1058_RS06415
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 480,057 - -1.3 480,136 + -1.2 480,195 + HMPREF1058_RS06435 0.15 +1.0 480,250 + HMPREF1058_RS06435 0.21 +1.0 480,276 + HMPREF1058_RS06435 0.24 +0.0 480,277 - HMPREF1058_RS06435 0.24 +0.7 480,279 + HMPREF1058_RS06435 0.24 -1.4 480,329 + HMPREF1058_RS06435 0.29 -0.3 480,330 - HMPREF1058_RS06435 0.29 +0.2 480,338 - HMPREF1058_RS06435 0.30 +0.8 480,375 + HMPREF1058_RS06435 0.34 +0.0 480,377 + HMPREF1058_RS06435 0.34 -0.1 480,377 + HMPREF1058_RS06435 0.34 +2.2 480,406 + HMPREF1058_RS06435 0.37 +0.9 480,566 + HMPREF1058_RS06435 0.54 -1.0 480,566 + HMPREF1058_RS06435 0.54 -0.5 480,575 - HMPREF1058_RS06435 0.55 -1.0 480,576 + HMPREF1058_RS06435 0.55 -1.1 480,577 - HMPREF1058_RS06435 0.55 +0.8 480,720 + HMPREF1058_RS06435 0.70 -0.1 480,855 + HMPREF1058_RS06435 0.84 -2.3 480,855 + HMPREF1058_RS06435 0.84 -1.0 480,855 + HMPREF1058_RS06435 0.84 -0.4 480,856 - HMPREF1058_RS06435 0.84 -0.0 481,067 - -0.4 481,141 + HMPREF1058_RS06430 0.18 -0.4 481,141 + HMPREF1058_RS06430 0.18 +0.2 481,141 + HMPREF1058_RS06430 0.18 +1.5 481,141 + HMPREF1058_RS06430 0.18 +2.7 481,142 - HMPREF1058_RS06430 0.18 +1.0 481,142 - HMPREF1058_RS06430 0.18 -0.6 481,469 + HMPREF1058_RS06430 0.83 +0.5 481,472 + HMPREF1058_RS06430 0.84 +1.2 481,472 + HMPREF1058_RS06430 0.84 +0.7 481,575 + -1.1 481,626 + -1.9 481,861 + HMPREF1058_RS06425 0.75 +0.4 481,861 + HMPREF1058_RS06425 0.75 +2.2 481,911 - -0.8 481,987 + -1.0 481,999 - -0.6 482,074 - -0.0 482,122 + HMPREF1058_RS06420 0.29 -0.6 482,122 + HMPREF1058_RS06420 0.29 -0.9 482,220 + HMPREF1058_RS06420 0.81 +2.5 482,220 + HMPREF1058_RS06420 0.81 -1.9 482,220 + HMPREF1058_RS06420 0.81 +1.0 482,220 + HMPREF1058_RS06420 0.81 -1.5 482,221 - HMPREF1058_RS06420 0.81 +0.1 482,221 - HMPREF1058_RS06420 0.81 -0.8 482,519 + HMPREF1058_RS06415 0.57 +0.9
Or see this region's nucleotide sequence