Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06255

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06260 and HMPREF1058_RS06255 are separated by 38 nucleotidesHMPREF1058_RS06255 and HMPREF1058_RS06250 are separated by 253 nucleotides HMPREF1058_RS06260: HMPREF1058_RS06260 - DUF3943 domain-containing protein, at 522,458 to 523,930 _RS06260 HMPREF1058_RS06255: HMPREF1058_RS06255 - hypothetical protein, at 523,969 to 525,354 _RS06255 HMPREF1058_RS06250: HMPREF1058_RS06250 - AMP-binding protein, at 525,608 to 527,266 _RS06250 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 523.094 kb on - strand, within HMPREF1058_RS06260at 523.188 kb on - strand, within HMPREF1058_RS06260at 523.230 kb on + strand, within HMPREF1058_RS06260at 523.433 kb on + strand, within HMPREF1058_RS06260at 523.447 kb on + strand, within HMPREF1058_RS06260at 523.447 kb on + strand, within HMPREF1058_RS06260at 523.533 kb on - strand, within HMPREF1058_RS06260at 523.550 kb on - strand, within HMPREF1058_RS06260at 523.563 kb on + strand, within HMPREF1058_RS06260at 523.585 kb on + strand, within HMPREF1058_RS06260at 523.739 kb on + strand, within HMPREF1058_RS06260at 523.838 kb on - strandat 523.840 kb on - strandat 523.890 kb on - strandat 523.922 kb on + strandat 523.942 kb on + strandat 523.947 kb on + strandat 524.026 kb on - strandat 524.121 kb on - strand, within HMPREF1058_RS06255at 524.121 kb on - strand, within HMPREF1058_RS06255at 524.164 kb on + strand, within HMPREF1058_RS06255at 524.179 kb on + strand, within HMPREF1058_RS06255at 524.180 kb on - strand, within HMPREF1058_RS06255at 524.191 kb on + strand, within HMPREF1058_RS06255at 524.298 kb on + strand, within HMPREF1058_RS06255at 524.317 kb on - strand, within HMPREF1058_RS06255at 524.391 kb on + strand, within HMPREF1058_RS06255at 524.392 kb on - strand, within HMPREF1058_RS06255at 524.506 kb on + strand, within HMPREF1058_RS06255at 524.506 kb on + strand, within HMPREF1058_RS06255at 524.507 kb on - strand, within HMPREF1058_RS06255at 524.507 kb on - strand, within HMPREF1058_RS06255at 524.520 kb on - strand, within HMPREF1058_RS06255at 524.698 kb on + strand, within HMPREF1058_RS06255at 524.705 kb on - strand, within HMPREF1058_RS06255at 524.800 kb on + strand, within HMPREF1058_RS06255at 524.800 kb on + strand, within HMPREF1058_RS06255at 524.801 kb on - strand, within HMPREF1058_RS06255at 524.932 kb on + strand, within HMPREF1058_RS06255at 525.133 kb on + strand, within HMPREF1058_RS06255at 525.134 kb on - strand, within HMPREF1058_RS06255at 525.180 kb on + strand, within HMPREF1058_RS06255at 525.404 kb on - strandat 525.405 kb on + strandat 525.416 kb on + strandat 525.461 kb on - strandat 525.461 kb on - strandat 525.497 kb on + strandat 525.498 kb on - strandat 525.498 kb on - strandat 525.498 kb on - strandat 525.509 kb on + strandat 525.510 kb on - strandat 525.510 kb on - strandat 525.518 kb on + strandat 525.527 kb on + strandat 525.563 kb on + strandat 525.565 kb on + strandat 525.565 kb on + strandat 525.570 kb on + strandat 525.571 kb on - strandat 525.573 kb on - strandat 525.573 kb on - strandat 525.574 kb on + strandat 525.575 kb on - strandat 525.575 kb on - strandat 525.626 kb on + strandat 525.626 kb on + strandat 525.627 kb on - strandat 525.839 kb on + strand, within HMPREF1058_RS06250at 525.840 kb on - strand, within HMPREF1058_RS06250at 525.872 kb on - strand, within HMPREF1058_RS06250at 525.905 kb on - strand, within HMPREF1058_RS06250at 526.016 kb on + strand, within HMPREF1058_RS06250at 526.050 kb on + strand, within HMPREF1058_RS06250at 526.062 kb on - strand, within HMPREF1058_RS06250at 526.066 kb on + strand, within HMPREF1058_RS06250at 526.080 kb on - strand, within HMPREF1058_RS06250at 526.080 kb on - strand, within HMPREF1058_RS06250at 526.083 kb on - strand, within HMPREF1058_RS06250at 526.091 kb on + strand, within HMPREF1058_RS06250at 526.092 kb on - strand, within HMPREF1058_RS06250at 526.095 kb on - strand, within HMPREF1058_RS06250at 526.095 kb on - strand, within HMPREF1058_RS06250at 526.096 kb on + strand, within HMPREF1058_RS06250at 526.244 kb on - strand, within HMPREF1058_RS06250at 526.262 kb on + strand, within HMPREF1058_RS06250at 526.290 kb on - strand, within HMPREF1058_RS06250

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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523,094 - HMPREF1058_RS06260 0.43 +0.6
523,188 - HMPREF1058_RS06260 0.50 +0.6
523,230 + HMPREF1058_RS06260 0.52 +0.3
523,433 + HMPREF1058_RS06260 0.66 +0.4
523,447 + HMPREF1058_RS06260 0.67 +0.1
523,447 + HMPREF1058_RS06260 0.67 -0.4
523,533 - HMPREF1058_RS06260 0.73 -0.6
523,550 - HMPREF1058_RS06260 0.74 +1.2
523,563 + HMPREF1058_RS06260 0.75 +1.1
523,585 + HMPREF1058_RS06260 0.77 +1.3
523,739 + HMPREF1058_RS06260 0.87 -0.2
523,838 - +0.8
523,840 - +0.8
523,890 - -0.1
523,922 + +0.3
523,942 + -0.1
523,947 + +1.9
524,026 - +1.9
524,121 - HMPREF1058_RS06255 0.11 -0.2
524,121 - HMPREF1058_RS06255 0.11 +0.7
524,164 + HMPREF1058_RS06255 0.14 -0.4
524,179 + HMPREF1058_RS06255 0.15 +0.2
524,180 - HMPREF1058_RS06255 0.15 +0.5
524,191 + HMPREF1058_RS06255 0.16 -0.2
524,298 + HMPREF1058_RS06255 0.24 +0.3
524,317 - HMPREF1058_RS06255 0.25 +0.4
524,391 + HMPREF1058_RS06255 0.30 +0.8
524,392 - HMPREF1058_RS06255 0.31 +2.3
524,506 + HMPREF1058_RS06255 0.39 +0.2
524,506 + HMPREF1058_RS06255 0.39 -0.7
524,507 - HMPREF1058_RS06255 0.39 +0.3
524,507 - HMPREF1058_RS06255 0.39 +1.0
524,520 - HMPREF1058_RS06255 0.40 +0.9
524,698 + HMPREF1058_RS06255 0.53 +0.9
524,705 - HMPREF1058_RS06255 0.53 +2.1
524,800 + HMPREF1058_RS06255 0.60 +0.1
524,800 + HMPREF1058_RS06255 0.60 +0.9
524,801 - HMPREF1058_RS06255 0.60 -0.1
524,932 + HMPREF1058_RS06255 0.69 -0.0
525,133 + HMPREF1058_RS06255 0.84 +1.4
525,134 - HMPREF1058_RS06255 0.84 +0.2
525,180 + HMPREF1058_RS06255 0.87 -0.2
525,404 - +1.1
525,405 + +2.0
525,416 + +1.0
525,461 - -0.1
525,461 - +0.2
525,497 + +0.7
525,498 - -1.4
525,498 - +0.2
525,498 - +0.7
525,509 + +0.9
525,510 - -0.9
525,510 - -0.7
525,518 + -1.2
525,527 + +0.6
525,563 + -0.1
525,565 + -0.1
525,565 + +0.7
525,570 + -0.3
525,571 - +0.4
525,573 - -0.3
525,573 - +1.2
525,574 + +1.5
525,575 - -0.3
525,575 - +0.5
525,626 + -2.0
525,626 + -0.3
525,627 - +0.6
525,839 + HMPREF1058_RS06250 0.14 -1.5
525,840 - HMPREF1058_RS06250 0.14 -0.4
525,872 - HMPREF1058_RS06250 0.16 +0.2
525,905 - HMPREF1058_RS06250 0.18 +0.3
526,016 + HMPREF1058_RS06250 0.25 -0.6
526,050 + HMPREF1058_RS06250 0.27 +0.2
526,062 - HMPREF1058_RS06250 0.27 +1.6
526,066 + HMPREF1058_RS06250 0.28 -0.1
526,080 - HMPREF1058_RS06250 0.28 -0.0
526,080 - HMPREF1058_RS06250 0.28 -3.0
526,083 - HMPREF1058_RS06250 0.29 +0.3
526,091 + HMPREF1058_RS06250 0.29 -1.6
526,092 - HMPREF1058_RS06250 0.29 -0.2
526,095 - HMPREF1058_RS06250 0.29 +1.5
526,095 - HMPREF1058_RS06250 0.29 -0.4
526,096 + HMPREF1058_RS06250 0.29 +0.1
526,244 - HMPREF1058_RS06250 0.38 -1.1
526,262 + HMPREF1058_RS06250 0.39 +0.4
526,290 - HMPREF1058_RS06250 0.41 +0.1

Or see this region's nucleotide sequence