Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06135 and HMPREF1058_RS06130 are separated by 292 nucleotides HMPREF1058_RS06130 and HMPREF1058_RS06125 are separated by 759 nucleotides
HMPREF1058_RS06135: HMPREF1058_RS06135 - PorT family protein, at 546,506 to 547,186
_RS06135
HMPREF1058_RS06130: HMPREF1058_RS06130 - beta-galactosidase, at 547,479 to 549,518
_RS06130
HMPREF1058_RS06125: HMPREF1058_RS06125 - hypothetical protein, at 550,278 to 550,706
_RS06125
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.572 kb on - strand at 546.655 kb on - strand, within HMPREF1058_RS06135 at 546.668 kb on - strand, within HMPREF1058_RS06135 at 546.676 kb on + strand, within HMPREF1058_RS06135 at 546.680 kb on - strand, within HMPREF1058_RS06135 at 546.702 kb on + strand, within HMPREF1058_RS06135 at 546.704 kb on + strand, within HMPREF1058_RS06135 at 546.708 kb on - strand, within HMPREF1058_RS06135 at 546.709 kb on + strand, within HMPREF1058_RS06135 at 546.716 kb on - strand, within HMPREF1058_RS06135 at 546.723 kb on - strand, within HMPREF1058_RS06135 at 546.733 kb on + strand, within HMPREF1058_RS06135 at 546.746 kb on + strand, within HMPREF1058_RS06135 at 546.746 kb on + strand, within HMPREF1058_RS06135 at 546.749 kb on - strand, within HMPREF1058_RS06135 at 546.752 kb on - strand, within HMPREF1058_RS06135 at 546.752 kb on - strand, within HMPREF1058_RS06135 at 546.763 kb on + strand, within HMPREF1058_RS06135 at 546.764 kb on - strand, within HMPREF1058_RS06135 at 546.868 kb on - strand, within HMPREF1058_RS06135 at 546.875 kb on + strand, within HMPREF1058_RS06135 at 546.875 kb on + strand, within HMPREF1058_RS06135 at 546.875 kb on + strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.879 kb on + strand, within HMPREF1058_RS06135 at 546.879 kb on + strand, within HMPREF1058_RS06135 at 546.917 kb on + strand, within HMPREF1058_RS06135 at 546.917 kb on + strand, within HMPREF1058_RS06135 at 546.918 kb on - strand, within HMPREF1058_RS06135 at 546.924 kb on + strand, within HMPREF1058_RS06135 at 546.928 kb on + strand, within HMPREF1058_RS06135 at 547.047 kb on + strand, within HMPREF1058_RS06135 at 547.125 kb on + strand at 547.125 kb on + strand at 547.125 kb on + strand at 547.126 kb on - strand at 547.137 kb on - strand at 547.137 kb on - strand at 547.165 kb on + strand at 547.215 kb on + strand at 547.220 kb on - strand at 547.316 kb on + strand at 547.319 kb on + strand at 547.320 kb on - strand at 547.320 kb on - strand at 547.320 kb on - strand at 547.321 kb on + strand at 547.322 kb on - strand at 547.351 kb on - strand at 547.451 kb on - strand at 547.460 kb on + strand at 547.462 kb on + strand at 547.474 kb on + strand at 547.475 kb on - strand at 547.563 kb on - strand at 547.563 kb on - strand at 547.601 kb on - strand at 547.619 kb on + strand at 547.620 kb on - strand at 547.678 kb on - strand at 547.690 kb on + strand, within HMPREF1058_RS06130 at 547.694 kb on + strand, within HMPREF1058_RS06130 at 547.700 kb on + strand, within HMPREF1058_RS06130 at 547.704 kb on - strand, within HMPREF1058_RS06130 at 547.704 kb on - strand, within HMPREF1058_RS06130 at 547.802 kb on + strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.804 kb on + strand, within HMPREF1058_RS06130 at 547.804 kb on + strand, within HMPREF1058_RS06130 at 547.805 kb on - strand, within HMPREF1058_RS06130 at 547.969 kb on + strand, within HMPREF1058_RS06130 at 547.970 kb on - strand, within HMPREF1058_RS06130 at 547.970 kb on - strand at 547.998 kb on - strand, within HMPREF1058_RS06130 at 548.014 kb on - strand, within HMPREF1058_RS06130 at 548.039 kb on - strand, within HMPREF1058_RS06130 at 548.039 kb on - strand, within HMPREF1058_RS06130 at 548.083 kb on + strand, within HMPREF1058_RS06130 at 548.084 kb on - strand, within HMPREF1058_RS06130 at 548.094 kb on - strand, within HMPREF1058_RS06130 at 548.203 kb on + strand, within HMPREF1058_RS06130 at 548.209 kb on + strand, within HMPREF1058_RS06130 at 548.218 kb on + strand, within HMPREF1058_RS06130 at 548.219 kb on - strand, within HMPREF1058_RS06130 at 548.275 kb on - strand, within HMPREF1058_RS06130 at 548.341 kb on + strand, within HMPREF1058_RS06130 at 548.410 kb on + strand, within HMPREF1058_RS06130 at 548.411 kb on - strand, within HMPREF1058_RS06130 at 548.480 kb on + strand, within HMPREF1058_RS06130 at 548.539 kb on - strand, within HMPREF1058_RS06130 at 548.539 kb on - strand, within HMPREF1058_RS06130 at 548.540 kb on + strand, within HMPREF1058_RS06130 at 548.680 kb on + strand, within HMPREF1058_RS06130 at 548.681 kb on - strand, within HMPREF1058_RS06130 at 548.691 kb on + strand, within HMPREF1058_RS06130 at 548.691 kb on + strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.703 kb on - strand, within HMPREF1058_RS06130 at 548.706 kb on - strand, within HMPREF1058_RS06130 at 548.758 kb on + strand, within HMPREF1058_RS06130 at 548.763 kb on + strand, within HMPREF1058_RS06130 at 548.765 kb on + strand, within HMPREF1058_RS06130 at 548.766 kb on - strand, within HMPREF1058_RS06130 at 548.768 kb on - strand, within HMPREF1058_RS06130 at 548.784 kb on - strand, within HMPREF1058_RS06130 at 548.817 kb on - strand, within HMPREF1058_RS06130 at 548.817 kb on - strand, within HMPREF1058_RS06130 at 548.990 kb on + strand, within HMPREF1058_RS06130 at 548.990 kb on + strand, within HMPREF1058_RS06130 at 548.990 kb on + strand, within HMPREF1058_RS06130 at 549.109 kb on - strand, within HMPREF1058_RS06130 at 549.269 kb on + strand, within HMPREF1058_RS06130 at 549.276 kb on + strand, within HMPREF1058_RS06130 at 549.277 kb on - strand, within HMPREF1058_RS06130 at 549.455 kb on - strand at 549.455 kb on - strand at 549.461 kb on - strand at 549.541 kb on - strand at 549.613 kb on + strand at 549.657 kb on + strand at 549.691 kb on + strand at 549.773 kb on + strand at 549.783 kb on + strand at 549.887 kb on - strand at 549.937 kb on + strand at 549.938 kb on - strand at 549.938 kb on - strand at 549.958 kb on - strand at 549.958 kb on - strand at 550.006 kb on - strand at 550.095 kb on - strand at 550.126 kb on - strand at 550.148 kb on - strand at 550.189 kb on - strand at 550.287 kb on + strand at 550.287 kb on + strand at 550.288 kb on - strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.359 kb on - strand, within HMPREF1058_RS06125 at 550.389 kb on + strand, within HMPREF1058_RS06125 at 550.416 kb on + strand, within HMPREF1058_RS06125 at 550.417 kb on - strand, within HMPREF1058_RS06125 at 550.421 kb on + strand, within HMPREF1058_RS06125 at 550.508 kb on + strand, within HMPREF1058_RS06125
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 546,572 - -0.5 546,655 - HMPREF1058_RS06135 0.22 +0.2 546,668 - HMPREF1058_RS06135 0.24 +0.0 546,676 + HMPREF1058_RS06135 0.25 -0.3 546,680 - HMPREF1058_RS06135 0.26 -0.7 546,702 + HMPREF1058_RS06135 0.29 -0.9 546,704 + HMPREF1058_RS06135 0.29 -0.4 546,708 - HMPREF1058_RS06135 0.30 +0.5 546,709 + HMPREF1058_RS06135 0.30 +1.0 546,716 - HMPREF1058_RS06135 0.31 -0.7 546,723 - HMPREF1058_RS06135 0.32 +0.5 546,733 + HMPREF1058_RS06135 0.33 -0.0 546,746 + HMPREF1058_RS06135 0.35 -0.2 546,746 + HMPREF1058_RS06135 0.35 +0.1 546,749 - HMPREF1058_RS06135 0.36 +1.4 546,752 - HMPREF1058_RS06135 0.36 -1.2 546,752 - HMPREF1058_RS06135 0.36 +0.6 546,763 + HMPREF1058_RS06135 0.38 -0.3 546,764 - HMPREF1058_RS06135 0.38 +0.9 546,868 - HMPREF1058_RS06135 0.53 -0.1 546,875 + HMPREF1058_RS06135 0.54 +0.6 546,875 + HMPREF1058_RS06135 0.54 -0.1 546,875 + HMPREF1058_RS06135 0.54 +1.4 546,876 - HMPREF1058_RS06135 0.54 -0.4 546,876 - HMPREF1058_RS06135 0.54 +0.8 546,876 - HMPREF1058_RS06135 0.54 -0.6 546,876 - HMPREF1058_RS06135 0.54 +0.0 546,879 + HMPREF1058_RS06135 0.55 -0.2 546,879 + HMPREF1058_RS06135 0.55 +1.1 546,917 + HMPREF1058_RS06135 0.60 +1.2 546,917 + HMPREF1058_RS06135 0.60 +1.6 546,918 - HMPREF1058_RS06135 0.60 -0.8 546,924 + HMPREF1058_RS06135 0.61 +1.3 546,928 + HMPREF1058_RS06135 0.62 +0.1 547,047 + HMPREF1058_RS06135 0.79 -1.0 547,125 + -2.3 547,125 + -0.8 547,125 + -0.4 547,126 - -1.8 547,137 - +1.4 547,137 - -1.2 547,165 + +0.2 547,215 + +0.0 547,220 - +0.1 547,316 + -0.7 547,319 + +0.6 547,320 - +1.8 547,320 - +0.6 547,320 - +0.6 547,321 + -0.7 547,322 - -0.7 547,351 - -0.1 547,451 - -1.0 547,460 + +0.2 547,462 + -0.7 547,474 + -0.4 547,475 - +1.0 547,563 - +0.2 547,563 - -1.5 547,601 - -2.9 547,619 + -0.4 547,620 - -1.1 547,678 - -1.0 547,690 + HMPREF1058_RS06130 0.10 +0.1 547,694 + HMPREF1058_RS06130 0.11 +1.0 547,700 + HMPREF1058_RS06130 0.11 -0.1 547,704 - HMPREF1058_RS06130 0.11 +1.0 547,704 - HMPREF1058_RS06130 0.11 +1.8 547,802 + HMPREF1058_RS06130 0.16 -0.8 547,803 - HMPREF1058_RS06130 0.16 +0.2 547,803 - HMPREF1058_RS06130 0.16 -0.4 547,803 - HMPREF1058_RS06130 0.16 -1.6 547,803 - HMPREF1058_RS06130 0.16 -1.1 547,804 + HMPREF1058_RS06130 0.16 -0.1 547,804 + HMPREF1058_RS06130 0.16 -0.7 547,805 - HMPREF1058_RS06130 0.16 -0.2 547,969 + HMPREF1058_RS06130 0.24 +1.0 547,970 - HMPREF1058_RS06130 0.24 -0.1 547,970 - +2.2 547,998 - HMPREF1058_RS06130 0.25 -0.7 548,014 - HMPREF1058_RS06130 0.26 -0.8 548,039 - HMPREF1058_RS06130 0.27 +0.6 548,039 - HMPREF1058_RS06130 0.27 +1.1 548,083 + HMPREF1058_RS06130 0.30 -0.9 548,084 - HMPREF1058_RS06130 0.30 -0.0 548,094 - HMPREF1058_RS06130 0.30 -0.8 548,203 + HMPREF1058_RS06130 0.35 +0.2 548,209 + HMPREF1058_RS06130 0.36 -1.7 548,218 + HMPREF1058_RS06130 0.36 -0.9 548,219 - HMPREF1058_RS06130 0.36 +0.4 548,275 - HMPREF1058_RS06130 0.39 -0.8 548,341 + HMPREF1058_RS06130 0.42 +0.3 548,410 + HMPREF1058_RS06130 0.46 -1.1 548,411 - HMPREF1058_RS06130 0.46 -0.2 548,480 + HMPREF1058_RS06130 0.49 -0.4 548,539 - HMPREF1058_RS06130 0.52 +0.8 548,539 - HMPREF1058_RS06130 0.52 -0.9 548,540 + HMPREF1058_RS06130 0.52 +1.0 548,680 + HMPREF1058_RS06130 0.59 +0.6 548,681 - HMPREF1058_RS06130 0.59 -1.1 548,691 + HMPREF1058_RS06130 0.59 +0.6 548,691 + HMPREF1058_RS06130 0.59 +1.3 548,692 - HMPREF1058_RS06130 0.59 -0.4 548,692 - HMPREF1058_RS06130 0.59 -1.9 548,692 - HMPREF1058_RS06130 0.59 +0.7 548,692 - HMPREF1058_RS06130 0.59 -0.8 548,692 - HMPREF1058_RS06130 0.59 +0.3 548,703 - HMPREF1058_RS06130 0.60 +0.8 548,706 - HMPREF1058_RS06130 0.60 -0.5 548,758 + HMPREF1058_RS06130 0.63 -1.2 548,763 + HMPREF1058_RS06130 0.63 +0.6 548,765 + HMPREF1058_RS06130 0.63 -0.4 548,766 - HMPREF1058_RS06130 0.63 -0.5 548,768 - HMPREF1058_RS06130 0.63 +0.5 548,784 - HMPREF1058_RS06130 0.64 +0.1 548,817 - HMPREF1058_RS06130 0.66 +0.8 548,817 - HMPREF1058_RS06130 0.66 -0.9 548,990 + HMPREF1058_RS06130 0.74 +0.1 548,990 + HMPREF1058_RS06130 0.74 -0.7 548,990 + HMPREF1058_RS06130 0.74 -0.3 549,109 - HMPREF1058_RS06130 0.80 -0.4 549,269 + HMPREF1058_RS06130 0.88 +0.9 549,276 + HMPREF1058_RS06130 0.88 +0.8 549,277 - HMPREF1058_RS06130 0.88 -1.6 549,455 - +0.6 549,455 - -0.1 549,461 - -0.8 549,541 - -0.7 549,613 + -0.2 549,657 + +0.0 549,691 + +0.5 549,773 + -0.4 549,783 + -0.5 549,887 - -2.8 549,937 + +0.8 549,938 - +0.4 549,938 - -1.6 549,958 - -0.7 549,958 - +2.2 550,006 - -1.1 550,095 - +0.1 550,126 - -0.1 550,148 - -1.7 550,189 - -1.1 550,287 + +1.3 550,287 + +0.6 550,288 - -0.2 550,317 - +0.3 550,317 - -0.6 550,317 - +2.8 550,317 - -0.6 550,359 - HMPREF1058_RS06125 0.19 -0.7 550,389 + HMPREF1058_RS06125 0.26 -0.7 550,416 + HMPREF1058_RS06125 0.32 +0.3 550,417 - HMPREF1058_RS06125 0.32 -0.0 550,421 + HMPREF1058_RS06125 0.33 +0.0 550,508 + HMPREF1058_RS06125 0.54 +1.2
Or see this region's nucleotide sequence