Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06040 and HMPREF1058_RS06035 are separated by 38 nucleotides HMPREF1058_RS06035 and HMPREF1058_RS06030 are separated by 156 nucleotides
HMPREF1058_RS06040: HMPREF1058_RS06040 - glutamine-hydrolyzing GMP synthase, at 17,651 to 19,204
_RS06040
HMPREF1058_RS06035: HMPREF1058_RS06035 - glutamine-hydrolyzing GMP synthase, at 19,243 to 20,550
_RS06035
HMPREF1058_RS06030: HMPREF1058_RS06030 - aminopeptidase P family protein, at 20,707 to 21,867
_RS06030
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.297 kb on + strand, within HMPREF1058_RS06040 at 18.426 kb on + strand, within HMPREF1058_RS06040 at 18.459 kb on + strand, within HMPREF1058_RS06040 at 18.639 kb on + strand, within HMPREF1058_RS06040 at 18.711 kb on + strand, within HMPREF1058_RS06040 at 18.756 kb on + strand, within HMPREF1058_RS06040 at 18.756 kb on + strand, within HMPREF1058_RS06040 at 18.772 kb on + strand, within HMPREF1058_RS06040 at 18.829 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 19.002 kb on + strand, within HMPREF1058_RS06040 at 19.002 kb on + strand at 19.018 kb on + strand, within HMPREF1058_RS06040 at 19.137 kb on + strand at 19.137 kb on + strand at 19.155 kb on + strand at 19.217 kb on + strand at 19.225 kb on + strand at 19.225 kb on + strand at 19.254 kb on + strand at 19.263 kb on + strand at 19.325 kb on + strand at 19.326 kb on - strand at 19.460 kb on - strand, within HMPREF1058_RS06035 at 19.670 kb on + strand, within HMPREF1058_RS06035 at 19.694 kb on + strand, within HMPREF1058_RS06035 at 19.754 kb on + strand, within HMPREF1058_RS06035 at 19.755 kb on - strand, within HMPREF1058_RS06035 at 19.755 kb on - strand, within HMPREF1058_RS06035 at 19.986 kb on + strand, within HMPREF1058_RS06035 at 20.020 kb on - strand, within HMPREF1058_RS06035 at 20.054 kb on + strand, within HMPREF1058_RS06035 at 20.055 kb on - strand, within HMPREF1058_RS06035 at 20.055 kb on - strand, within HMPREF1058_RS06035 at 20.150 kb on + strand, within HMPREF1058_RS06035 at 20.412 kb on + strand, within HMPREF1058_RS06035 at 20.413 kb on - strand, within HMPREF1058_RS06035 at 20.413 kb on - strand, within HMPREF1058_RS06035 at 20.421 kb on + strand at 20.422 kb on - strand at 20.422 kb on - strand at 20.422 kb on - strand at 20.470 kb on - strand at 20.555 kb on + strand at 20.556 kb on - strand at 20.558 kb on - strand at 20.642 kb on - strand at 20.695 kb on - strand at 20.716 kb on + strand at 20.797 kb on + strand at 21.027 kb on + strand, within HMPREF1058_RS06030 at 21.074 kb on + strand, within HMPREF1058_RS06030 at 21.074 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.127 kb on - strand, within HMPREF1058_RS06030 at 21.127 kb on - strand, within HMPREF1058_RS06030 at 21.127 kb on - strand, within HMPREF1058_RS06030 at 21.128 kb on + strand, within HMPREF1058_RS06030 at 21.148 kb on + strand, within HMPREF1058_RS06030 at 21.160 kb on + strand, within HMPREF1058_RS06030 at 21.267 kb on + strand, within HMPREF1058_RS06030 at 21.292 kb on - strand, within HMPREF1058_RS06030 at 21.296 kb on - strand, within HMPREF1058_RS06030 at 21.403 kb on + strand, within HMPREF1058_RS06030 at 21.404 kb on - strand, within HMPREF1058_RS06030 at 21.404 kb on - strand, within HMPREF1058_RS06030 at 21.404 kb on - strand, within HMPREF1058_RS06030 at 21.417 kb on + strand, within HMPREF1058_RS06030 at 21.418 kb on - strand, within HMPREF1058_RS06030 at 21.420 kb on + strand, within HMPREF1058_RS06030 at 21.421 kb on - strand, within HMPREF1058_RS06030 at 21.422 kb on + strand, within HMPREF1058_RS06030 at 21.423 kb on - strand, within HMPREF1058_RS06030 at 21.505 kb on - strand, within HMPREF1058_RS06030
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 18,297 + HMPREF1058_RS06040 0.42 -1.0 18,426 + HMPREF1058_RS06040 0.50 +0.8 18,459 + HMPREF1058_RS06040 0.52 +1.5 18,639 + HMPREF1058_RS06040 0.64 -0.9 18,711 + HMPREF1058_RS06040 0.68 +0.6 18,756 + HMPREF1058_RS06040 0.71 -1.3 18,756 + HMPREF1058_RS06040 0.71 -2.3 18,772 + HMPREF1058_RS06040 0.72 +0.0 18,829 + HMPREF1058_RS06040 0.76 +0.4 18,887 + HMPREF1058_RS06040 0.80 +0.6 18,887 + HMPREF1058_RS06040 0.80 +0.1 18,887 + HMPREF1058_RS06040 0.80 -0.6 18,887 + HMPREF1058_RS06040 0.80 +1.7 18,887 + HMPREF1058_RS06040 0.80 -0.4 18,957 + HMPREF1058_RS06040 0.84 -1.0 18,957 + HMPREF1058_RS06040 0.84 +0.2 18,957 + HMPREF1058_RS06040 0.84 +0.6 19,002 + HMPREF1058_RS06040 0.87 -0.4 19,002 + +1.8 19,018 + HMPREF1058_RS06040 0.88 -1.0 19,137 + -1.9 19,137 + -0.5 19,155 + -0.7 19,217 + +0.6 19,225 + +1.6 19,225 + -0.4 19,254 + +1.8 19,263 + -0.7 19,325 + +1.4 19,326 - +0.5 19,460 - HMPREF1058_RS06035 0.17 -0.2 19,670 + HMPREF1058_RS06035 0.33 +0.5 19,694 + HMPREF1058_RS06035 0.34 +0.6 19,754 + HMPREF1058_RS06035 0.39 +1.8 19,755 - HMPREF1058_RS06035 0.39 -2.0 19,755 - HMPREF1058_RS06035 0.39 +0.2 19,986 + HMPREF1058_RS06035 0.57 +1.7 20,020 - HMPREF1058_RS06035 0.59 -1.4 20,054 + HMPREF1058_RS06035 0.62 +0.9 20,055 - HMPREF1058_RS06035 0.62 +0.4 20,055 - HMPREF1058_RS06035 0.62 -0.1 20,150 + HMPREF1058_RS06035 0.69 +0.4 20,412 + HMPREF1058_RS06035 0.89 -0.3 20,413 - HMPREF1058_RS06035 0.89 -0.2 20,413 - HMPREF1058_RS06035 0.89 +1.7 20,421 + -0.8 20,422 - -1.9 20,422 - -1.0 20,422 - +0.9 20,470 - -0.1 20,555 + +0.5 20,556 - +2.7 20,558 - -0.2 20,642 - -0.5 20,695 - -1.1 20,716 + +0.2 20,797 + +0.4 21,027 + HMPREF1058_RS06030 0.28 +0.8 21,074 + HMPREF1058_RS06030 0.32 -0.1 21,074 + HMPREF1058_RS06030 0.32 +1.1 21,126 + HMPREF1058_RS06030 0.36 -1.1 21,126 + HMPREF1058_RS06030 0.36 +0.4 21,126 + HMPREF1058_RS06030 0.36 +0.2 21,126 + HMPREF1058_RS06030 0.36 +0.6 21,127 - HMPREF1058_RS06030 0.36 -0.3 21,127 - HMPREF1058_RS06030 0.36 -0.3 21,127 - HMPREF1058_RS06030 0.36 +0.5 21,128 + HMPREF1058_RS06030 0.36 -0.5 21,148 + HMPREF1058_RS06030 0.38 +0.8 21,160 + HMPREF1058_RS06030 0.39 -0.2 21,267 + HMPREF1058_RS06030 0.48 -0.3 21,292 - HMPREF1058_RS06030 0.50 +0.6 21,296 - HMPREF1058_RS06030 0.51 +0.4 21,403 + HMPREF1058_RS06030 0.60 +0.8 21,404 - HMPREF1058_RS06030 0.60 -0.3 21,404 - HMPREF1058_RS06030 0.60 -0.3 21,404 - HMPREF1058_RS06030 0.60 +0.3 21,417 + HMPREF1058_RS06030 0.61 -0.8 21,418 - HMPREF1058_RS06030 0.61 +0.2 21,420 + HMPREF1058_RS06030 0.61 -0.0 21,421 - HMPREF1058_RS06030 0.61 -0.5 21,422 + HMPREF1058_RS06030 0.62 -0.3 21,423 - HMPREF1058_RS06030 0.62 +0.4 21,505 - HMPREF1058_RS06030 0.69 -1.2
Or see this region's nucleotide sequence