Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05565 and HMPREF1058_RS05560 are separated by 83 nucleotides HMPREF1058_RS05560 and HMPREF1058_RS05555 are separated by 139 nucleotides HMPREF1058_RS05555 and HMPREF1058_RS05550 overlap by 11 nucleotides
HMPREF1058_RS05565: HMPREF1058_RS05565 - DUF3987 domain-containing protein, at 133,802 to 135,169
_RS05565
HMPREF1058_RS05560: HMPREF1058_RS05560 - hypothetical protein, at 135,253 to 136,326
_RS05560
HMPREF1058_RS05555: HMPREF1058_RS05555 - MobC family plasmid mobilization relaxosome protein, at 136,466 to 136,774
_RS05555
HMPREF1058_RS05550: HMPREF1058_RS05550 - relaxase/mobilization nuclease domain-containing protein, at 136,764 to 137,702
_RS05550
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1
2 at 134.477 kb on + strand, within HMPREF1058_RS05565 at 134.478 kb on - strand, within HMPREF1058_RS05565 at 134.478 kb on - strand, within HMPREF1058_RS05565 at 134.478 kb on - strand, within HMPREF1058_RS05565 at 134.813 kb on - strand, within HMPREF1058_RS05565 at 134.835 kb on - strand, within HMPREF1058_RS05565 at 134.835 kb on - strand, within HMPREF1058_RS05565 at 134.860 kb on - strand, within HMPREF1058_RS05565 at 134.900 kb on - strand, within HMPREF1058_RS05565 at 135.168 kb on - strand at 135.168 kb on - strand at 135.168 kb on - strand at 135.177 kb on - strand at 135.180 kb on - strand at 135.232 kb on - strand at 135.273 kb on - strand at 135.343 kb on + strand at 135.384 kb on - strand, within HMPREF1058_RS05560 at 135.384 kb on - strand, within HMPREF1058_RS05560 at 135.422 kb on - strand at 135.422 kb on - strand, within HMPREF1058_RS05560 at 135.423 kb on + strand, within HMPREF1058_RS05560 at 135.437 kb on - strand, within HMPREF1058_RS05560 at 135.596 kb on + strand, within HMPREF1058_RS05560 at 135.597 kb on - strand, within HMPREF1058_RS05560 at 135.643 kb on + strand, within HMPREF1058_RS05560 at 135.922 kb on + strand, within HMPREF1058_RS05560 at 135.923 kb on - strand, within HMPREF1058_RS05560 at 136.444 kb on - strand at 136.465 kb on + strand at 136.808 kb on - strand at 136.830 kb on - strand at 136.830 kb on - strand at 136.940 kb on + strand, within HMPREF1058_RS05550 at 136.942 kb on + strand, within HMPREF1058_RS05550 at 136.942 kb on + strand, within HMPREF1058_RS05550 at 137.022 kb on - strand, within HMPREF1058_RS05550 at 137.070 kb on - strand, within HMPREF1058_RS05550 at 137.175 kb on - strand, within HMPREF1058_RS05550
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 134,477 + HMPREF1058_RS05565 0.49 -0.9 134,478 - HMPREF1058_RS05565 0.49 -1.1 134,478 - HMPREF1058_RS05565 0.49 -0.1 134,478 - HMPREF1058_RS05565 0.49 -0.9 134,813 - HMPREF1058_RS05565 0.74 +0.1 134,835 - HMPREF1058_RS05565 0.76 -0.6 134,835 - HMPREF1058_RS05565 0.76 -0.3 134,860 - HMPREF1058_RS05565 0.77 +0.6 134,900 - HMPREF1058_RS05565 0.80 -0.4 135,168 - -0.2 135,168 - +0.4 135,168 - +0.8 135,177 - +0.4 135,180 - +0.0 135,232 - +0.0 135,273 - +0.2 135,343 + -1.0 135,384 - HMPREF1058_RS05560 0.12 +1.6 135,384 - HMPREF1058_RS05560 0.12 -0.8 135,422 - -1.1 135,422 - HMPREF1058_RS05560 0.16 +0.2 135,423 + HMPREF1058_RS05560 0.16 -0.0 135,437 - HMPREF1058_RS05560 0.17 -1.3 135,596 + HMPREF1058_RS05560 0.32 +0.4 135,597 - HMPREF1058_RS05560 0.32 +1.0 135,643 + HMPREF1058_RS05560 0.36 -0.8 135,922 + HMPREF1058_RS05560 0.62 +1.4 135,923 - HMPREF1058_RS05560 0.62 +1.6 136,444 - +0.5 136,465 + -0.2 136,808 - +1.1 136,830 - +0.2 136,830 - -0.8 136,940 + HMPREF1058_RS05550 0.19 +0.3 136,942 + HMPREF1058_RS05550 0.19 +0.0 136,942 + HMPREF1058_RS05550 0.19 +2.3 137,022 - HMPREF1058_RS05550 0.27 +0.4 137,070 - HMPREF1058_RS05550 0.33 +0.6 137,175 - HMPREF1058_RS05550 0.44 +0.0
Or see this region's nucleotide sequence