Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05525 and HMPREF1058_RS05520 are separated by 96 nucleotides HMPREF1058_RS05520 and HMPREF1058_RS20945 are separated by 10 nucleotides
HMPREF1058_RS05525: HMPREF1058_RS05525 - toll/interleukin-1 receptor domain-containing protein, at 143,225 to 144,151
_RS05525
HMPREF1058_RS05520: HMPREF1058_RS05520 - DUF4357 domain-containing protein, at 144,248 to 144,427
_RS05520
HMPREF1058_RS20945: HMPREF1058_RS20945 - hypothetical protein, at 144,438 to 145,733
_RS20945
Position (kb) 144
145 Strain fitness (log2 ratio) -2
-1
0
1 at 143.248 kb on + strand at 143.331 kb on + strand, within HMPREF1058_RS05525 at 143.593 kb on + strand, within HMPREF1058_RS05525 at 143.601 kb on + strand, within HMPREF1058_RS05525 at 143.613 kb on + strand, within HMPREF1058_RS05525 at 143.613 kb on + strand, within HMPREF1058_RS05525 at 143.615 kb on + strand, within HMPREF1058_RS05525 at 143.687 kb on - strand, within HMPREF1058_RS05525 at 143.796 kb on + strand, within HMPREF1058_RS05525 at 143.796 kb on + strand, within HMPREF1058_RS05525 at 143.797 kb on - strand, within HMPREF1058_RS05525 at 143.845 kb on - strand, within HMPREF1058_RS05525 at 143.927 kb on - strand, within HMPREF1058_RS05525 at 143.941 kb on + strand, within HMPREF1058_RS05525 at 143.953 kb on + strand, within HMPREF1058_RS05525 at 143.979 kb on + strand, within HMPREF1058_RS05525 at 143.995 kb on + strand, within HMPREF1058_RS05525 at 143.995 kb on + strand, within HMPREF1058_RS05525 at 143.995 kb on + strand, within HMPREF1058_RS05525 at 144.007 kb on + strand, within HMPREF1058_RS05525 at 144.094 kb on + strand at 144.099 kb on + strand at 144.105 kb on + strand at 144.105 kb on + strand at 144.131 kb on - strand at 144.148 kb on - strand at 144.176 kb on - strand at 144.391 kb on + strand, within HMPREF1058_RS05520 at 144.432 kb on + strand at 144.435 kb on + strand at 144.458 kb on + strand at 144.458 kb on + strand at 144.590 kb on - strand, within HMPREF1058_RS20945 at 144.593 kb on + strand, within HMPREF1058_RS20945 at 144.594 kb on - strand, within HMPREF1058_RS20945 at 144.601 kb on + strand, within HMPREF1058_RS20945 at 144.602 kb on - strand, within HMPREF1058_RS20945 at 144.638 kb on - strand, within HMPREF1058_RS20945 at 144.638 kb on - strand, within HMPREF1058_RS20945 at 144.644 kb on + strand, within HMPREF1058_RS20945 at 144.645 kb on - strand, within HMPREF1058_RS20945 at 144.658 kb on + strand, within HMPREF1058_RS20945 at 144.801 kb on - strand, within HMPREF1058_RS20945 at 144.886 kb on + strand, within HMPREF1058_RS20945 at 144.920 kb on + strand, within HMPREF1058_RS20945 at 144.923 kb on - strand, within HMPREF1058_RS20945 at 144.932 kb on + strand, within HMPREF1058_RS20945 at 144.932 kb on + strand, within HMPREF1058_RS20945 at 144.962 kb on - strand, within HMPREF1058_RS20945 at 145.001 kb on - strand, within HMPREF1058_RS20945 at 145.046 kb on - strand, within HMPREF1058_RS20945 at 145.069 kb on + strand, within HMPREF1058_RS20945 at 145.069 kb on + strand, within HMPREF1058_RS20945 at 145.070 kb on - strand, within HMPREF1058_RS20945 at 145.070 kb on - strand, within HMPREF1058_RS20945 at 145.130 kb on + strand, within HMPREF1058_RS20945 at 145.169 kb on + strand, within HMPREF1058_RS20945 at 145.187 kb on - strand, within HMPREF1058_RS20945 at 145.190 kb on + strand, within HMPREF1058_RS20945 at 145.196 kb on + strand, within HMPREF1058_RS20945 at 145.257 kb on - strand, within HMPREF1058_RS20945 at 145.271 kb on - strand, within HMPREF1058_RS20945 at 145.388 kb on + strand, within HMPREF1058_RS20945 at 145.400 kb on - strand, within HMPREF1058_RS20945 at 145.400 kb on - strand, within HMPREF1058_RS20945 at 145.407 kb on - strand, within HMPREF1058_RS20945
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 143,248 + +0.4 143,331 + HMPREF1058_RS05525 0.11 +0.8 143,593 + HMPREF1058_RS05525 0.40 -0.7 143,601 + HMPREF1058_RS05525 0.41 -1.0 143,613 + HMPREF1058_RS05525 0.42 +0.3 143,613 + HMPREF1058_RS05525 0.42 -0.4 143,615 + HMPREF1058_RS05525 0.42 -0.1 143,687 - HMPREF1058_RS05525 0.50 +0.2 143,796 + HMPREF1058_RS05525 0.62 +0.6 143,796 + HMPREF1058_RS05525 0.62 +0.1 143,797 - HMPREF1058_RS05525 0.62 -1.6 143,845 - HMPREF1058_RS05525 0.67 -2.3 143,927 - HMPREF1058_RS05525 0.76 +0.0 143,941 + HMPREF1058_RS05525 0.77 +0.7 143,953 + HMPREF1058_RS05525 0.79 +0.8 143,979 + HMPREF1058_RS05525 0.81 +1.4 143,995 + HMPREF1058_RS05525 0.83 -1.4 143,995 + HMPREF1058_RS05525 0.83 -0.6 143,995 + HMPREF1058_RS05525 0.83 -1.2 144,007 + HMPREF1058_RS05525 0.84 -0.6 144,094 + -1.3 144,099 + -0.8 144,105 + +1.4 144,105 + +0.2 144,131 - +0.3 144,148 - -0.2 144,176 - -0.9 144,391 + HMPREF1058_RS05520 0.79 +0.8 144,432 + -0.7 144,435 + +0.4 144,458 + +0.9 144,458 + +0.9 144,590 - HMPREF1058_RS20945 0.12 +0.2 144,593 + HMPREF1058_RS20945 0.12 +0.0 144,594 - HMPREF1058_RS20945 0.12 +0.0 144,601 + HMPREF1058_RS20945 0.13 -2.6 144,602 - HMPREF1058_RS20945 0.13 +0.3 144,638 - HMPREF1058_RS20945 0.15 +0.5 144,638 - HMPREF1058_RS20945 0.15 -0.5 144,644 + HMPREF1058_RS20945 0.16 -0.4 144,645 - HMPREF1058_RS20945 0.16 -0.2 144,658 + HMPREF1058_RS20945 0.17 -0.3 144,801 - HMPREF1058_RS20945 0.28 +0.4 144,886 + HMPREF1058_RS20945 0.35 +0.7 144,920 + HMPREF1058_RS20945 0.37 -0.3 144,923 - HMPREF1058_RS20945 0.37 -0.2 144,932 + HMPREF1058_RS20945 0.38 -0.2 144,932 + HMPREF1058_RS20945 0.38 -1.7 144,962 - HMPREF1058_RS20945 0.40 +1.2 145,001 - HMPREF1058_RS20945 0.43 +0.5 145,046 - HMPREF1058_RS20945 0.47 +0.2 145,069 + HMPREF1058_RS20945 0.49 -0.3 145,069 + HMPREF1058_RS20945 0.49 +1.1 145,070 - HMPREF1058_RS20945 0.49 -1.3 145,070 - HMPREF1058_RS20945 0.49 -0.4 145,130 + HMPREF1058_RS20945 0.53 -0.3 145,169 + HMPREF1058_RS20945 0.56 -2.1 145,187 - HMPREF1058_RS20945 0.58 +1.1 145,190 + HMPREF1058_RS20945 0.58 +0.0 145,196 + HMPREF1058_RS20945 0.58 -2.3 145,257 - HMPREF1058_RS20945 0.63 -1.1 145,271 - HMPREF1058_RS20945 0.64 -0.7 145,388 + HMPREF1058_RS20945 0.73 -1.6 145,400 - HMPREF1058_RS20945 0.74 -0.8 145,400 - HMPREF1058_RS20945 0.74 +0.2 145,407 - HMPREF1058_RS20945 0.75 -0.8
Or see this region's nucleotide sequence