Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05460 and HMPREF1058_RS05455 are separated by 6 nucleotides HMPREF1058_RS05455 and HMPREF1058_RS05450 are separated by 42 nucleotides HMPREF1058_RS05450 and HMPREF1058_RS21640 are separated by 47 nucleotides
HMPREF1058_RS05460: HMPREF1058_RS05460 - aldo/keto reductase, at 160,882 to 162,054
_RS05460
HMPREF1058_RS05455: HMPREF1058_RS05455 - alpha/beta fold hydrolase, at 162,061 to 163,092
_RS05455
HMPREF1058_RS05450: HMPREF1058_RS05450 - flavodoxin, at 163,135 to 163,722
_RS05450
HMPREF1058_RS21640: HMPREF1058_RS21640 - phage integrase SAM-like domain-containing protein, at 163,770 to 164,774
_RS21640
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.088 kb on + strand, within HMPREF1058_RS05460 at 161.088 kb on + strand, within HMPREF1058_RS05460 at 161.274 kb on + strand, within HMPREF1058_RS05460 at 161.335 kb on - strand, within HMPREF1058_RS05460 at 161.425 kb on + strand, within HMPREF1058_RS05460 at 161.518 kb on - strand, within HMPREF1058_RS05460 at 161.561 kb on + strand, within HMPREF1058_RS05460 at 161.561 kb on + strand, within HMPREF1058_RS05460 at 161.668 kb on + strand, within HMPREF1058_RS05460 at 161.701 kb on - strand, within HMPREF1058_RS05460 at 161.714 kb on - strand, within HMPREF1058_RS05460 at 161.788 kb on + strand, within HMPREF1058_RS05460 at 161.793 kb on + strand, within HMPREF1058_RS05460 at 162.118 kb on + strand at 162.118 kb on + strand at 162.119 kb on - strand at 162.202 kb on + strand, within HMPREF1058_RS05455 at 162.256 kb on + strand, within HMPREF1058_RS05455 at 162.501 kb on - strand, within HMPREF1058_RS05455 at 162.595 kb on + strand, within HMPREF1058_RS05455 at 162.670 kb on - strand, within HMPREF1058_RS05455 at 162.670 kb on - strand, within HMPREF1058_RS05455 at 162.699 kb on + strand, within HMPREF1058_RS05455 at 162.705 kb on - strand, within HMPREF1058_RS05455 at 162.798 kb on - strand, within HMPREF1058_RS05455 at 162.826 kb on + strand, within HMPREF1058_RS05455 at 163.091 kb on - strand at 163.215 kb on - strand, within HMPREF1058_RS05450 at 163.215 kb on - strand, within HMPREF1058_RS05450 at 163.253 kb on + strand, within HMPREF1058_RS05450 at 163.254 kb on - strand, within HMPREF1058_RS05450 at 163.258 kb on + strand, within HMPREF1058_RS05450 at 163.258 kb on + strand, within HMPREF1058_RS05450 at 163.279 kb on - strand, within HMPREF1058_RS05450 at 163.363 kb on + strand, within HMPREF1058_RS05450 at 163.363 kb on + strand, within HMPREF1058_RS05450 at 163.363 kb on + strand, within HMPREF1058_RS05450 at 163.363 kb on + strand, within HMPREF1058_RS05450 at 163.364 kb on - strand, within HMPREF1058_RS05450 at 163.364 kb on - strand, within HMPREF1058_RS05450 at 163.364 kb on - strand, within HMPREF1058_RS05450 at 163.364 kb on - strand, within HMPREF1058_RS05450 at 163.365 kb on + strand, within HMPREF1058_RS05450 at 163.366 kb on - strand, within HMPREF1058_RS05450 at 163.450 kb on + strand, within HMPREF1058_RS05450 at 163.455 kb on + strand, within HMPREF1058_RS05450 at 163.726 kb on + strand at 163.746 kb on - strand at 163.761 kb on + strand at 163.836 kb on + strand at 163.889 kb on + strand, within HMPREF1058_RS21640 at 163.942 kb on - strand, within HMPREF1058_RS21640 at 163.966 kb on - strand, within HMPREF1058_RS21640
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 161,088 + HMPREF1058_RS05460 0.18 -1.0 161,088 + HMPREF1058_RS05460 0.18 +1.3 161,274 + HMPREF1058_RS05460 0.33 -1.1 161,335 - HMPREF1058_RS05460 0.39 -0.2 161,425 + HMPREF1058_RS05460 0.46 -1.0 161,518 - HMPREF1058_RS05460 0.54 +0.6 161,561 + HMPREF1058_RS05460 0.58 +0.0 161,561 + HMPREF1058_RS05460 0.58 +0.7 161,668 + HMPREF1058_RS05460 0.67 -0.8 161,701 - HMPREF1058_RS05460 0.70 +1.0 161,714 - HMPREF1058_RS05460 0.71 +0.0 161,788 + HMPREF1058_RS05460 0.77 -0.3 161,793 + HMPREF1058_RS05460 0.78 +1.0 162,118 + +0.4 162,118 + +0.1 162,119 - -1.2 162,202 + HMPREF1058_RS05455 0.14 +1.6 162,256 + HMPREF1058_RS05455 0.19 +0.9 162,501 - HMPREF1058_RS05455 0.43 +0.5 162,595 + HMPREF1058_RS05455 0.52 +0.4 162,670 - HMPREF1058_RS05455 0.59 -0.2 162,670 - HMPREF1058_RS05455 0.59 -0.1 162,699 + HMPREF1058_RS05455 0.62 +0.3 162,705 - HMPREF1058_RS05455 0.62 +0.6 162,798 - HMPREF1058_RS05455 0.71 -0.2 162,826 + HMPREF1058_RS05455 0.74 +1.2 163,091 - -2.0 163,215 - HMPREF1058_RS05450 0.14 -0.8 163,215 - HMPREF1058_RS05450 0.14 -0.2 163,253 + HMPREF1058_RS05450 0.20 -0.5 163,254 - HMPREF1058_RS05450 0.20 +0.1 163,258 + HMPREF1058_RS05450 0.21 -0.6 163,258 + HMPREF1058_RS05450 0.21 -0.1 163,279 - HMPREF1058_RS05450 0.24 +1.3 163,363 + HMPREF1058_RS05450 0.39 +0.2 163,363 + HMPREF1058_RS05450 0.39 -0.1 163,363 + HMPREF1058_RS05450 0.39 +0.1 163,363 + HMPREF1058_RS05450 0.39 -0.7 163,364 - HMPREF1058_RS05450 0.39 -0.2 163,364 - HMPREF1058_RS05450 0.39 +2.0 163,364 - HMPREF1058_RS05450 0.39 -0.4 163,364 - HMPREF1058_RS05450 0.39 -0.1 163,365 + HMPREF1058_RS05450 0.39 +0.1 163,366 - HMPREF1058_RS05450 0.39 -0.4 163,450 + HMPREF1058_RS05450 0.54 -0.6 163,455 + HMPREF1058_RS05450 0.54 +0.4 163,726 + -1.0 163,746 - +0.1 163,761 + +0.6 163,836 + -0.1 163,889 + HMPREF1058_RS21640 0.12 -0.6 163,942 - HMPREF1058_RS21640 0.17 -0.7 163,966 - HMPREF1058_RS21640 0.20 +0.9
Or see this region's nucleotide sequence