Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05425 and HMPREF1058_RS05420 are separated by 13 nucleotides HMPREF1058_RS05420 and HMPREF1058_RS05415 are separated by 76 nucleotides HMPREF1058_RS05415 and HMPREF1058_RS05410 are separated by 101 nucleotides HMPREF1058_RS05410 and HMPREF1058_RS05405 are separated by 22 nucleotides
HMPREF1058_RS05425: HMPREF1058_RS05425 - class I fructose-bisphosphate aldolase, at 168,287 to 169,336
_RS05425
HMPREF1058_RS05420: HMPREF1058_RS05420 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 169,350 to 170,099
_RS05420
HMPREF1058_RS05415: HMPREF1058_RS05415 - Hsp20/alpha crystallin family protein, at 170,176 to 170,604
_RS05415
HMPREF1058_RS05410: HMPREF1058_RS05410 - RNA polymerase sigma factor, at 170,706 to 171,203
_RS05410
HMPREF1058_RS05405: HMPREF1058_RS05405 - 6-phosphofructokinase, at 171,226 to 172,212
_RS05405
Position (kb) 170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.207 kb on - strand, within HMPREF1058_RS05425 at 169.306 kb on - strand at 169.306 kb on - strand at 169.345 kb on + strand at 169.345 kb on + strand at 169.360 kb on + strand at 169.370 kb on - strand at 169.370 kb on - strand at 169.433 kb on - strand, within HMPREF1058_RS05420 at 169.510 kb on - strand, within HMPREF1058_RS05420 at 169.640 kb on + strand, within HMPREF1058_RS05420 at 169.678 kb on + strand, within HMPREF1058_RS05420 at 169.679 kb on - strand, within HMPREF1058_RS05420 at 169.699 kb on - strand, within HMPREF1058_RS05420 at 169.815 kb on - strand, within HMPREF1058_RS05420 at 169.867 kb on - strand, within HMPREF1058_RS05420 at 169.950 kb on - strand, within HMPREF1058_RS05420 at 169.984 kb on - strand, within HMPREF1058_RS05420 at 170.148 kb on + strand at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.431 kb on + strand at 170.432 kb on - strand, within HMPREF1058_RS05415 at 170.432 kb on - strand, within HMPREF1058_RS05415 at 170.603 kb on - strand at 170.783 kb on + strand, within HMPREF1058_RS05410 at 170.946 kb on + strand, within HMPREF1058_RS05410 at 170.946 kb on + strand, within HMPREF1058_RS05410 at 170.946 kb on + strand at 170.947 kb on - strand, within HMPREF1058_RS05410 at 170.970 kb on + strand, within HMPREF1058_RS05410 at 170.971 kb on - strand, within HMPREF1058_RS05410 at 170.971 kb on - strand, within HMPREF1058_RS05410 at 171.018 kb on + strand, within HMPREF1058_RS05410 at 171.039 kb on - strand, within HMPREF1058_RS05410 at 171.087 kb on + strand, within HMPREF1058_RS05410 at 171.087 kb on + strand, within HMPREF1058_RS05410 at 171.087 kb on + strand, within HMPREF1058_RS05410 at 171.146 kb on + strand, within HMPREF1058_RS05410 at 171.189 kb on - strand at 171.241 kb on + strand at 171.242 kb on - strand at 171.243 kb on + strand at 171.405 kb on - strand, within HMPREF1058_RS05405 at 171.430 kb on - strand, within HMPREF1058_RS05405 at 171.532 kb on - strand at 171.597 kb on - strand, within HMPREF1058_RS05405
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 169,207 - HMPREF1058_RS05425 0.88 -0.9 169,306 - -0.2 169,306 - +0.4 169,345 + +1.2 169,345 + +0.4 169,360 + +0.8 169,370 - +1.7 169,370 - +0.6 169,433 - HMPREF1058_RS05420 0.11 -0.3 169,510 - HMPREF1058_RS05420 0.21 -0.2 169,640 + HMPREF1058_RS05420 0.39 +0.9 169,678 + HMPREF1058_RS05420 0.44 +0.6 169,679 - HMPREF1058_RS05420 0.44 -0.4 169,699 - HMPREF1058_RS05420 0.47 -0.3 169,815 - HMPREF1058_RS05420 0.62 -1.1 169,867 - HMPREF1058_RS05420 0.69 +1.1 169,950 - HMPREF1058_RS05420 0.80 -1.2 169,984 - HMPREF1058_RS05420 0.85 -0.1 170,148 + +1.4 170,303 - HMPREF1058_RS05415 0.30 -2.8 170,303 - HMPREF1058_RS05415 0.30 +0.6 170,431 + -1.0 170,432 - HMPREF1058_RS05415 0.60 +1.5 170,432 - HMPREF1058_RS05415 0.60 +0.5 170,603 - +1.1 170,783 + HMPREF1058_RS05410 0.15 +1.4 170,946 + HMPREF1058_RS05410 0.48 +0.3 170,946 + HMPREF1058_RS05410 0.48 +0.9 170,946 + +1.4 170,947 - HMPREF1058_RS05410 0.48 +2.4 170,970 + HMPREF1058_RS05410 0.53 +0.3 170,971 - HMPREF1058_RS05410 0.53 -0.3 170,971 - HMPREF1058_RS05410 0.53 +0.1 171,018 + HMPREF1058_RS05410 0.63 -1.0 171,039 - HMPREF1058_RS05410 0.67 +0.3 171,087 + HMPREF1058_RS05410 0.77 +0.4 171,087 + HMPREF1058_RS05410 0.77 -0.3 171,087 + HMPREF1058_RS05410 0.77 +1.9 171,146 + HMPREF1058_RS05410 0.88 +0.5 171,189 - -0.7 171,241 + +0.3 171,242 - -0.6 171,243 + +2.4 171,405 - HMPREF1058_RS05405 0.18 -0.7 171,430 - HMPREF1058_RS05405 0.21 -0.4 171,532 - -0.4 171,597 - HMPREF1058_RS05405 0.38 -0.8
Or see this region's nucleotide sequence