Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05265 and HMPREF1058_RS05260 are separated by 118 nucleotides HMPREF1058_RS05260 and HMPREF1058_RS05255 are separated by 15 nucleotides HMPREF1058_RS05255 and HMPREF1058_RS05250 are separated by 234 nucleotides
HMPREF1058_RS05265: HMPREF1058_RS05265 - IS21 family transposase, at 206,372 to 207,937
_RS05265
HMPREF1058_RS05260: HMPREF1058_RS05260 - hypothetical protein, at 208,056 to 208,277
_RS05260
HMPREF1058_RS05255: HMPREF1058_RS05255 - hypothetical protein, at 208,293 to 208,568
_RS05255
HMPREF1058_RS05250: HMPREF1058_RS05250 - transposase, at 208,803 to 209,411
_RS05250
Position (kb) 208
209 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 208.157 kb on + strand, within HMPREF1058_RS05260 at 208.278 kb on - strand at 208.317 kb on + strand at 208.339 kb on + strand, within HMPREF1058_RS05255 at 208.355 kb on + strand, within HMPREF1058_RS05255 at 208.356 kb on - strand, within HMPREF1058_RS05255 at 208.379 kb on + strand, within HMPREF1058_RS05255 at 208.380 kb on - strand, within HMPREF1058_RS05255 at 208.381 kb on + strand, within HMPREF1058_RS05255 at 208.381 kb on + strand, within HMPREF1058_RS05255 at 208.381 kb on + strand, within HMPREF1058_RS05255 at 208.408 kb on + strand, within HMPREF1058_RS05255 at 208.410 kb on + strand, within HMPREF1058_RS05255 at 208.410 kb on + strand, within HMPREF1058_RS05255 at 208.469 kb on + strand, within HMPREF1058_RS05255 at 208.489 kb on - strand, within HMPREF1058_RS05255 at 208.494 kb on - strand, within HMPREF1058_RS05255 at 208.523 kb on - strand, within HMPREF1058_RS05255 at 208.557 kb on - strand at 208.612 kb on - strand at 208.631 kb on - strand at 208.666 kb on + strand at 208.679 kb on + strand at 208.680 kb on - strand at 208.703 kb on + strand at 208.709 kb on - strand at 208.781 kb on + strand at 208.837 kb on - strand at 209.324 kb on - strand, within HMPREF1058_RS05250
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 208,157 + HMPREF1058_RS05260 0.45 -0.0 208,278 - +2.9 208,317 + +0.1 208,339 + HMPREF1058_RS05255 0.17 +0.7 208,355 + HMPREF1058_RS05255 0.22 -0.8 208,356 - HMPREF1058_RS05255 0.23 +0.3 208,379 + HMPREF1058_RS05255 0.31 +0.3 208,380 - HMPREF1058_RS05255 0.32 +0.5 208,381 + HMPREF1058_RS05255 0.32 +0.5 208,381 + HMPREF1058_RS05255 0.32 -2.3 208,381 + HMPREF1058_RS05255 0.32 +1.4 208,408 + HMPREF1058_RS05255 0.42 -0.5 208,410 + HMPREF1058_RS05255 0.42 +2.2 208,410 + HMPREF1058_RS05255 0.42 +0.8 208,469 + HMPREF1058_RS05255 0.64 +0.8 208,489 - HMPREF1058_RS05255 0.71 +1.2 208,494 - HMPREF1058_RS05255 0.73 -0.1 208,523 - HMPREF1058_RS05255 0.83 +0.8 208,557 - -0.2 208,612 - -2.1 208,631 - +0.7 208,666 + +0.3 208,679 + -1.4 208,680 - +0.0 208,703 + -0.4 208,709 - -0.6 208,781 + +0.7 208,837 - +0.8 209,324 - HMPREF1058_RS05250 0.86 -0.2
Or see this region's nucleotide sequence