Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04945 and HMPREF1058_RS04940 are separated by 145 nucleotides HMPREF1058_RS04940 and HMPREF1058_RS04935 are separated by 135 nucleotides
HMPREF1058_RS04945: HMPREF1058_RS04945 - hypothetical protein, at 285,909 to 287,006
_RS04945
HMPREF1058_RS04940: HMPREF1058_RS04940 - TetR/AcrR family transcriptional regulator, at 287,152 to 287,763
_RS04940
HMPREF1058_RS04935: HMPREF1058_RS04935 - site-specific integrase, at 287,899 to 288,999
_RS04935
Position (kb) 287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.189 kb on - strand, within HMPREF1058_RS04945 at 286.225 kb on - strand, within HMPREF1058_RS04945 at 286.299 kb on + strand, within HMPREF1058_RS04945 at 286.441 kb on - strand, within HMPREF1058_RS04945 at 286.476 kb on + strand, within HMPREF1058_RS04945 at 286.477 kb on - strand, within HMPREF1058_RS04945 at 286.522 kb on - strand, within HMPREF1058_RS04945 at 286.626 kb on + strand, within HMPREF1058_RS04945 at 286.695 kb on + strand, within HMPREF1058_RS04945 at 286.737 kb on + strand, within HMPREF1058_RS04945 at 286.854 kb on + strand, within HMPREF1058_RS04945 at 287.005 kb on - strand at 287.005 kb on - strand at 287.152 kb on - strand at 287.279 kb on - strand, within HMPREF1058_RS04940 at 287.323 kb on + strand, within HMPREF1058_RS04940 at 287.403 kb on - strand, within HMPREF1058_RS04940 at 287.488 kb on + strand, within HMPREF1058_RS04940 at 287.511 kb on - strand, within HMPREF1058_RS04940 at 287.511 kb on - strand, within HMPREF1058_RS04940 at 287.518 kb on + strand, within HMPREF1058_RS04940 at 287.568 kb on - strand, within HMPREF1058_RS04940 at 287.568 kb on - strand, within HMPREF1058_RS04940 at 287.784 kb on + strand at 287.795 kb on + strand at 287.866 kb on + strand at 287.980 kb on + strand at 287.980 kb on + strand at 288.110 kb on - strand, within HMPREF1058_RS04935 at 288.113 kb on + strand, within HMPREF1058_RS04935 at 288.113 kb on + strand, within HMPREF1058_RS04935 at 288.119 kb on - strand, within HMPREF1058_RS04935 at 288.131 kb on - strand, within HMPREF1058_RS04935 at 288.264 kb on + strand, within HMPREF1058_RS04935 at 288.311 kb on - strand, within HMPREF1058_RS04935 at 288.448 kb on + strand, within HMPREF1058_RS04935 at 288.448 kb on + strand, within HMPREF1058_RS04935
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 286,156 - HMPREF1058_RS04945 0.22 -0.6 286,156 - HMPREF1058_RS04945 0.22 -0.4 286,189 - HMPREF1058_RS04945 0.26 -0.3 286,225 - HMPREF1058_RS04945 0.29 -1.0 286,299 + HMPREF1058_RS04945 0.36 -3.2 286,441 - HMPREF1058_RS04945 0.48 +2.5 286,476 + HMPREF1058_RS04945 0.52 +0.5 286,477 - HMPREF1058_RS04945 0.52 -0.8 286,522 - HMPREF1058_RS04945 0.56 +0.1 286,626 + HMPREF1058_RS04945 0.65 -1.3 286,695 + HMPREF1058_RS04945 0.72 +0.0 286,737 + HMPREF1058_RS04945 0.75 +0.7 286,854 + HMPREF1058_RS04945 0.86 -1.3 287,005 - +0.0 287,005 - -0.1 287,152 - +0.1 287,279 - HMPREF1058_RS04940 0.21 +1.5 287,323 + HMPREF1058_RS04940 0.28 +1.2 287,403 - HMPREF1058_RS04940 0.41 +2.1 287,488 + HMPREF1058_RS04940 0.55 +0.4 287,511 - HMPREF1058_RS04940 0.59 +0.4 287,511 - HMPREF1058_RS04940 0.59 -1.7 287,518 + HMPREF1058_RS04940 0.60 -0.1 287,568 - HMPREF1058_RS04940 0.68 -0.8 287,568 - HMPREF1058_RS04940 0.68 -0.0 287,784 + -0.9 287,795 + +0.4 287,866 + +0.0 287,980 + -0.1 287,980 + +0.0 288,110 - HMPREF1058_RS04935 0.19 +0.0 288,113 + HMPREF1058_RS04935 0.19 +0.7 288,113 + HMPREF1058_RS04935 0.19 -1.3 288,119 - HMPREF1058_RS04935 0.20 +1.4 288,131 - HMPREF1058_RS04935 0.21 -2.4 288,264 + HMPREF1058_RS04935 0.33 +0.0 288,311 - HMPREF1058_RS04935 0.37 +0.4 288,448 + HMPREF1058_RS04935 0.50 -0.4 288,448 + HMPREF1058_RS04935 0.50 +0.2
Or see this region's nucleotide sequence