Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03775 and HMPREF1058_RS03770 are separated by 189 nucleotides HMPREF1058_RS03770 and HMPREF1058_RS03765 are separated by 158 nucleotides HMPREF1058_RS03765 and HMPREF1058_RS03760 are separated by 83 nucleotides
HMPREF1058_RS03775: HMPREF1058_RS03775 - biotin/lipoyl-binding protein, at 188,424 to 190,199
_RS03775
HMPREF1058_RS03770: HMPREF1058_RS03770 - RNA polymerase sigma factor, at 190,389 to 190,892
_RS03770
HMPREF1058_RS03765: HMPREF1058_RS03765 - trimeric intracellular cation channel family protein, at 191,051 to 191,665
_RS03765
HMPREF1058_RS03760: HMPREF1058_RS03760 - UDP-N-acetyl glucosamine 2-epimerase, at 191,749 to 192,837
_RS03760
Position (kb) 190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 189.398 kb on + strand, within HMPREF1058_RS03775 at 189.400 kb on + strand, within HMPREF1058_RS03775 at 189.401 kb on - strand, within HMPREF1058_RS03775 at 189.401 kb on - strand, within HMPREF1058_RS03775 at 189.450 kb on - strand, within HMPREF1058_RS03775 at 189.548 kb on + strand, within HMPREF1058_RS03775 at 189.548 kb on + strand, within HMPREF1058_RS03775 at 189.591 kb on + strand, within HMPREF1058_RS03775 at 189.731 kb on - strand, within HMPREF1058_RS03775 at 189.740 kb on + strand, within HMPREF1058_RS03775 at 189.802 kb on + strand, within HMPREF1058_RS03775 at 189.803 kb on - strand, within HMPREF1058_RS03775 at 189.808 kb on - strand, within HMPREF1058_RS03775 at 189.825 kb on - strand, within HMPREF1058_RS03775 at 189.904 kb on - strand, within HMPREF1058_RS03775 at 189.957 kb on - strand, within HMPREF1058_RS03775 at 189.957 kb on - strand, within HMPREF1058_RS03775 at 189.982 kb on - strand, within HMPREF1058_RS03775 at 189.992 kb on + strand, within HMPREF1058_RS03775 at 189.998 kb on + strand, within HMPREF1058_RS03775 at 190.029 kb on + strand at 190.029 kb on + strand at 190.029 kb on + strand at 190.029 kb on + strand at 190.062 kb on - strand at 190.161 kb on - strand at 190.305 kb on - strand at 190.312 kb on + strand at 190.526 kb on + strand, within HMPREF1058_RS03770 at 190.555 kb on - strand, within HMPREF1058_RS03770 at 190.556 kb on + strand, within HMPREF1058_RS03770 at 190.556 kb on + strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.564 kb on - strand, within HMPREF1058_RS03770 at 190.580 kb on - strand, within HMPREF1058_RS03770 at 190.580 kb on - strand, within HMPREF1058_RS03770 at 190.596 kb on - strand, within HMPREF1058_RS03770 at 190.620 kb on - strand, within HMPREF1058_RS03770 at 190.623 kb on + strand, within HMPREF1058_RS03770 at 190.623 kb on + strand, within HMPREF1058_RS03770 at 190.624 kb on - strand, within HMPREF1058_RS03770 at 190.624 kb on - strand, within HMPREF1058_RS03770 at 190.631 kb on - strand, within HMPREF1058_RS03770 at 190.644 kb on - strand, within HMPREF1058_RS03770 at 190.671 kb on + strand, within HMPREF1058_RS03770 at 190.712 kb on + strand, within HMPREF1058_RS03770 at 190.713 kb on - strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.748 kb on - strand, within HMPREF1058_RS03770 at 190.748 kb on - strand, within HMPREF1058_RS03770 at 190.843 kb on - strand at 190.880 kb on + strand at 190.892 kb on + strand at 191.079 kb on - strand at 191.087 kb on - strand at 191.125 kb on + strand, within HMPREF1058_RS03765 at 191.126 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.136 kb on - strand, within HMPREF1058_RS03765 at 191.177 kb on + strand, within HMPREF1058_RS03765 at 191.254 kb on + strand, within HMPREF1058_RS03765 at 191.255 kb on - strand, within HMPREF1058_RS03765 at 191.306 kb on + strand at 191.307 kb on - strand, within HMPREF1058_RS03765 at 191.309 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.438 kb on + strand, within HMPREF1058_RS03765 at 191.465 kb on + strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.469 kb on - strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.473 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.476 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.559 kb on - strand, within HMPREF1058_RS03765 at 191.562 kb on + strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand at 191.633 kb on + strand at 191.643 kb on - strand at 191.665 kb on + strand at 191.665 kb on + strand at 191.735 kb on + strand at 191.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 189,398 + HMPREF1058_RS03775 0.55 -2.8 189,400 + HMPREF1058_RS03775 0.55 -1.0 189,401 - HMPREF1058_RS03775 0.55 -0.4 189,401 - HMPREF1058_RS03775 0.55 -0.6 189,450 - HMPREF1058_RS03775 0.58 +0.1 189,548 + HMPREF1058_RS03775 0.63 +0.4 189,548 + HMPREF1058_RS03775 0.63 +1.2 189,591 + HMPREF1058_RS03775 0.66 +0.0 189,731 - HMPREF1058_RS03775 0.74 -0.1 189,740 + HMPREF1058_RS03775 0.74 +1.5 189,802 + HMPREF1058_RS03775 0.78 +0.3 189,803 - HMPREF1058_RS03775 0.78 -0.2 189,808 - HMPREF1058_RS03775 0.78 -1.5 189,825 - HMPREF1058_RS03775 0.79 -1.1 189,904 - HMPREF1058_RS03775 0.83 -0.1 189,957 - HMPREF1058_RS03775 0.86 +0.2 189,957 - HMPREF1058_RS03775 0.86 +0.8 189,982 - HMPREF1058_RS03775 0.88 -1.1 189,992 + HMPREF1058_RS03775 0.88 +0.3 189,998 + HMPREF1058_RS03775 0.89 +0.4 190,029 + +1.6 190,029 + +2.4 190,029 + -0.5 190,029 + +0.8 190,062 - -0.8 190,161 - -0.9 190,305 - -0.5 190,312 + +1.3 190,526 + HMPREF1058_RS03770 0.27 +1.7 190,555 - HMPREF1058_RS03770 0.33 -0.5 190,556 + HMPREF1058_RS03770 0.33 +2.6 190,556 + HMPREF1058_RS03770 0.33 +1.9 190,557 - HMPREF1058_RS03770 0.33 +1.8 190,557 - HMPREF1058_RS03770 0.33 +1.7 190,557 - HMPREF1058_RS03770 0.33 +0.5 190,564 - HMPREF1058_RS03770 0.35 +4.7 190,580 - HMPREF1058_RS03770 0.38 +1.8 190,580 - HMPREF1058_RS03770 0.38 +1.0 190,596 - HMPREF1058_RS03770 0.41 +0.3 190,620 - HMPREF1058_RS03770 0.46 +1.1 190,623 + HMPREF1058_RS03770 0.46 +1.7 190,623 + HMPREF1058_RS03770 0.46 +0.0 190,624 - HMPREF1058_RS03770 0.47 +1.7 190,624 - HMPREF1058_RS03770 0.47 +1.5 190,631 - HMPREF1058_RS03770 0.48 +3.1 190,644 - HMPREF1058_RS03770 0.51 +1.6 190,671 + HMPREF1058_RS03770 0.56 +0.9 190,712 + HMPREF1058_RS03770 0.64 -0.2 190,713 - HMPREF1058_RS03770 0.64 +2.9 190,714 + HMPREF1058_RS03770 0.64 +1.0 190,714 + HMPREF1058_RS03770 0.64 -0.1 190,714 + HMPREF1058_RS03770 0.64 +1.9 190,747 + HMPREF1058_RS03770 0.71 +1.8 190,747 + HMPREF1058_RS03770 0.71 +1.6 190,747 + HMPREF1058_RS03770 0.71 +0.9 190,747 + HMPREF1058_RS03770 0.71 +3.1 190,748 - HMPREF1058_RS03770 0.71 +1.4 190,748 - HMPREF1058_RS03770 0.71 +2.0 190,843 - +1.6 190,880 + +1.2 190,892 + +1.1 191,079 - -2.8 191,087 - -1.3 191,125 + HMPREF1058_RS03765 0.12 +0.2 191,126 - HMPREF1058_RS03765 0.12 +0.8 191,129 - HMPREF1058_RS03765 0.13 +1.0 191,129 - HMPREF1058_RS03765 0.13 +1.3 191,129 - HMPREF1058_RS03765 0.13 -0.5 191,136 - HMPREF1058_RS03765 0.14 +0.5 191,177 + HMPREF1058_RS03765 0.20 -0.3 191,254 + HMPREF1058_RS03765 0.33 -1.0 191,255 - HMPREF1058_RS03765 0.33 -0.2 191,306 + -0.8 191,307 - HMPREF1058_RS03765 0.42 -0.3 191,309 - HMPREF1058_RS03765 0.42 +0.2 191,411 - HMPREF1058_RS03765 0.59 -0.2 191,411 - HMPREF1058_RS03765 0.59 +0.5 191,422 - HMPREF1058_RS03765 0.60 +1.1 191,422 - HMPREF1058_RS03765 0.60 -0.6 191,438 + HMPREF1058_RS03765 0.63 +0.5 191,465 + HMPREF1058_RS03765 0.67 +0.4 191,466 - HMPREF1058_RS03765 0.67 -0.7 191,466 - HMPREF1058_RS03765 0.67 -0.4 191,469 - HMPREF1058_RS03765 0.68 +1.8 191,472 + HMPREF1058_RS03765 0.68 -1.6 191,472 + HMPREF1058_RS03765 0.68 +1.5 191,473 - HMPREF1058_RS03765 0.69 +0.2 191,475 - HMPREF1058_RS03765 0.69 +2.4 191,475 - HMPREF1058_RS03765 0.69 -1.1 191,476 + HMPREF1058_RS03765 0.69 -0.3 191,527 + HMPREF1058_RS03765 0.77 -0.2 191,527 + HMPREF1058_RS03765 0.77 +0.7 191,559 - HMPREF1058_RS03765 0.83 +0.5 191,562 + HMPREF1058_RS03765 0.83 -1.1 191,563 - HMPREF1058_RS03765 0.83 +0.8 191,563 - HMPREF1058_RS03765 0.83 -0.7 191,563 - HMPREF1058_RS03765 0.83 +1.9 191,563 - +1.0 191,633 + +0.5 191,643 - -0.1 191,665 + -0.6 191,665 + +0.8 191,735 + -0.7 191,756 + +0.7
Or see this region's nucleotide sequence