Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03680 and HMPREF1058_RS03675 are separated by 276 nucleotides HMPREF1058_RS03675 and HMPREF1058_RS03670 are separated by 94 nucleotides
HMPREF1058_RS03680: HMPREF1058_RS03680 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 217,841 to 219,697
_RS03680
HMPREF1058_RS03675: HMPREF1058_RS03675 - hypothetical protein, at 219,974 to 220,411
_RS03675
HMPREF1058_RS03670: HMPREF1058_RS03670 - IS256 family transposase, at 220,506 to 221,738
_RS03670
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1
2 at 219.101 kb on - strand, within HMPREF1058_RS03680 at 219.101 kb on - strand, within HMPREF1058_RS03680 at 219.131 kb on - strand, within HMPREF1058_RS03680 at 219.216 kb on + strand, within HMPREF1058_RS03680 at 219.223 kb on + strand, within HMPREF1058_RS03680 at 219.223 kb on + strand, within HMPREF1058_RS03680 at 219.224 kb on - strand at 219.228 kb on + strand, within HMPREF1058_RS03680 at 219.229 kb on - strand, within HMPREF1058_RS03680 at 219.235 kb on - strand, within HMPREF1058_RS03680 at 219.281 kb on - strand, within HMPREF1058_RS03680 at 219.281 kb on - strand, within HMPREF1058_RS03680 at 219.289 kb on + strand, within HMPREF1058_RS03680 at 219.289 kb on + strand, within HMPREF1058_RS03680 at 219.410 kb on + strand, within HMPREF1058_RS03680 at 219.411 kb on - strand, within HMPREF1058_RS03680 at 219.411 kb on - strand, within HMPREF1058_RS03680 at 219.475 kb on + strand, within HMPREF1058_RS03680 at 219.504 kb on + strand, within HMPREF1058_RS03680 at 219.505 kb on - strand, within HMPREF1058_RS03680 at 219.509 kb on - strand, within HMPREF1058_RS03680 at 219.645 kb on + strand at 219.657 kb on + strand at 219.727 kb on - strand at 219.799 kb on + strand at 219.812 kb on + strand at 219.821 kb on + strand at 219.821 kb on + strand at 219.868 kb on - strand at 219.895 kb on + strand at 219.945 kb on - strand at 220.009 kb on - strand at 220.014 kb on + strand at 220.024 kb on - strand, within HMPREF1058_RS03675 at 220.050 kb on + strand, within HMPREF1058_RS03675 at 220.057 kb on - strand, within HMPREF1058_RS03675 at 220.057 kb on - strand, within HMPREF1058_RS03675 at 220.094 kb on + strand, within HMPREF1058_RS03675 at 220.160 kb on + strand, within HMPREF1058_RS03675 at 220.163 kb on + strand, within HMPREF1058_RS03675 at 220.218 kb on + strand, within HMPREF1058_RS03675 at 220.218 kb on + strand, within HMPREF1058_RS03675 at 220.219 kb on - strand, within HMPREF1058_RS03675 at 220.253 kb on + strand, within HMPREF1058_RS03675 at 220.301 kb on - strand, within HMPREF1058_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 219,101 - HMPREF1058_RS03680 0.68 +1.2 219,101 - HMPREF1058_RS03680 0.68 +0.2 219,131 - HMPREF1058_RS03680 0.69 -0.1 219,216 + HMPREF1058_RS03680 0.74 +0.2 219,223 + HMPREF1058_RS03680 0.74 +0.5 219,223 + HMPREF1058_RS03680 0.74 +0.4 219,224 - -0.5 219,228 + HMPREF1058_RS03680 0.75 -0.7 219,229 - HMPREF1058_RS03680 0.75 +2.4 219,235 - HMPREF1058_RS03680 0.75 -0.1 219,281 - HMPREF1058_RS03680 0.78 -1.0 219,281 - HMPREF1058_RS03680 0.78 +0.2 219,289 + HMPREF1058_RS03680 0.78 -0.2 219,289 + HMPREF1058_RS03680 0.78 -0.2 219,410 + HMPREF1058_RS03680 0.84 -1.2 219,411 - HMPREF1058_RS03680 0.85 +1.4 219,411 - HMPREF1058_RS03680 0.85 +0.1 219,475 + HMPREF1058_RS03680 0.88 -2.0 219,504 + HMPREF1058_RS03680 0.90 -0.9 219,505 - HMPREF1058_RS03680 0.90 -0.7 219,509 - HMPREF1058_RS03680 0.90 -0.3 219,645 + -0.4 219,657 + +2.4 219,727 - -1.1 219,799 + +1.4 219,812 + -1.1 219,821 + +1.4 219,821 + +1.0 219,868 - +1.4 219,895 + -0.6 219,945 - -1.9 220,009 - +0.0 220,014 + +1.5 220,024 - HMPREF1058_RS03675 0.11 +1.6 220,050 + HMPREF1058_RS03675 0.17 +0.5 220,057 - HMPREF1058_RS03675 0.19 +1.4 220,057 - HMPREF1058_RS03675 0.19 +2.4 220,094 + HMPREF1058_RS03675 0.27 +0.3 220,160 + HMPREF1058_RS03675 0.42 +1.1 220,163 + HMPREF1058_RS03675 0.43 +1.6 220,218 + HMPREF1058_RS03675 0.56 -0.6 220,218 + HMPREF1058_RS03675 0.56 -0.5 220,219 - HMPREF1058_RS03675 0.56 +0.1 220,253 + HMPREF1058_RS03675 0.64 +0.9 220,301 - HMPREF1058_RS03675 0.75 +0.7
Or see this region's nucleotide sequence