Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03635 and HMPREF1058_RS03630 are separated by 185 nucleotides HMPREF1058_RS03630 and HMPREF1058_RS03625 overlap by 1 nucleotides
HMPREF1058_RS03635: HMPREF1058_RS03635 - YjbH domain-containing protein, at 233,415 to 234,224
_RS03635
HMPREF1058_RS03630: HMPREF1058_RS03630 - WecB/TagA/CpsF family glycosyltransferase, at 234,410 to 235,123
_RS03630
HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199
_RS03625
Position (kb)
234
235
236 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 233.428 kb on - strand at 233.442 kb on - strand at 233.490 kb on - strand at 233.531 kb on + strand, within HMPREF1058_RS03635 at 233.534 kb on - strand, within HMPREF1058_RS03635 at 233.544 kb on - strand, within HMPREF1058_RS03635 at 233.589 kb on - strand, within HMPREF1058_RS03635 at 233.667 kb on - strand, within HMPREF1058_RS03635 at 233.668 kb on + strand, within HMPREF1058_RS03635 at 233.669 kb on - strand, within HMPREF1058_RS03635 at 233.724 kb on - strand, within HMPREF1058_RS03635 at 233.767 kb on + strand, within HMPREF1058_RS03635 at 233.814 kb on + strand, within HMPREF1058_RS03635 at 233.815 kb on - strand, within HMPREF1058_RS03635 at 233.815 kb on - strand, within HMPREF1058_RS03635 at 233.946 kb on - strand, within HMPREF1058_RS03635 at 233.988 kb on + strand at 233.988 kb on + strand, within HMPREF1058_RS03635 at 234.006 kb on - strand, within HMPREF1058_RS03635 at 234.011 kb on + strand, within HMPREF1058_RS03635 at 234.012 kb on - strand, within HMPREF1058_RS03635 at 234.012 kb on - strand, within HMPREF1058_RS03635 at 234.012 kb on - strand, within HMPREF1058_RS03635 at 234.048 kb on + strand, within HMPREF1058_RS03635 at 234.050 kb on + strand, within HMPREF1058_RS03635 at 234.055 kb on + strand, within HMPREF1058_RS03635 at 234.055 kb on + strand, within HMPREF1058_RS03635 at 234.056 kb on - strand, within HMPREF1058_RS03635 at 234.056 kb on - strand, within HMPREF1058_RS03635 at 234.059 kb on + strand, within HMPREF1058_RS03635 at 234.061 kb on + strand, within HMPREF1058_RS03635 at 234.061 kb on + strand, within HMPREF1058_RS03635 at 234.061 kb on + strand, within HMPREF1058_RS03635 at 234.122 kb on + strand, within HMPREF1058_RS03635 at 234.253 kb on - strand at 234.342 kb on + strand at 234.343 kb on - strand at 234.349 kb on - strand at 234.475 kb on + strand at 234.475 kb on + strand at 234.476 kb on - strand at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.496 kb on - strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.665 kb on + strand, within HMPREF1058_RS03630 at 234.696 kb on - strand, within HMPREF1058_RS03630 at 234.832 kb on + strand, within HMPREF1058_RS03630 at 234.835 kb on - strand, within HMPREF1058_RS03630 at 234.862 kb on - strand, within HMPREF1058_RS03630 at 234.971 kb on - strand, within HMPREF1058_RS03630 at 234.990 kb on - strand, within HMPREF1058_RS03630 at 235.042 kb on - strand, within HMPREF1058_RS03630 at 235.101 kb on + strand at 235.105 kb on + strand at 235.146 kb on - strand at 235.197 kb on - strand at 235.231 kb on - strand, within HMPREF1058_RS03625 at 235.375 kb on - strand, within HMPREF1058_RS03625 at 235.380 kb on - strand, within HMPREF1058_RS03625 at 235.393 kb on - strand, within HMPREF1058_RS03625 at 235.405 kb on + strand, within HMPREF1058_RS03625 at 235.542 kb on - strand, within HMPREF1058_RS03625 at 235.558 kb on - strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.671 kb on + strand, within HMPREF1058_RS03625 at 235.711 kb on + strand, within HMPREF1058_RS03625 at 235.748 kb on - strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.784 kb on + strand, within HMPREF1058_RS03625 at 235.788 kb on + strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.899 kb on - strand, within HMPREF1058_RS03625 at 235.909 kb on - strand, within HMPREF1058_RS03625 at 235.934 kb on + strand, within HMPREF1058_RS03625 at 236.034 kb on + strand, within HMPREF1058_RS03625 at 236.086 kb on - strand, within HMPREF1058_RS03625 at 236.104 kb on - strand at 236.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 233,428 - +0.6 233,442 - -0.6 233,490 - -0.2 233,531 + HMPREF1058_RS03635 0.14 -0.8 233,534 - HMPREF1058_RS03635 0.15 +0.1 233,544 - HMPREF1058_RS03635 0.16 -0.5 233,589 - HMPREF1058_RS03635 0.21 +0.3 233,667 - HMPREF1058_RS03635 0.31 -0.2 233,668 + HMPREF1058_RS03635 0.31 -1.7 233,669 - HMPREF1058_RS03635 0.31 -0.8 233,724 - HMPREF1058_RS03635 0.38 -1.1 233,767 + HMPREF1058_RS03635 0.43 +0.7 233,814 + HMPREF1058_RS03635 0.49 -1.1 233,815 - HMPREF1058_RS03635 0.49 -0.1 233,815 - HMPREF1058_RS03635 0.49 -0.0 233,946 - HMPREF1058_RS03635 0.66 +0.8 233,988 + +0.4 233,988 + HMPREF1058_RS03635 0.71 +0.1 234,006 - HMPREF1058_RS03635 0.73 -0.4 234,011 + HMPREF1058_RS03635 0.74 -0.2 234,012 - HMPREF1058_RS03635 0.74 -1.9 234,012 - HMPREF1058_RS03635 0.74 -0.2 234,012 - HMPREF1058_RS03635 0.74 +0.7 234,048 + HMPREF1058_RS03635 0.78 +0.6 234,050 + HMPREF1058_RS03635 0.78 -0.2 234,055 + HMPREF1058_RS03635 0.79 -1.7 234,055 + HMPREF1058_RS03635 0.79 -1.6 234,056 - HMPREF1058_RS03635 0.79 -1.5 234,056 - HMPREF1058_RS03635 0.79 +1.4 234,059 + HMPREF1058_RS03635 0.80 -1.0 234,061 + HMPREF1058_RS03635 0.80 +0.5 234,061 + HMPREF1058_RS03635 0.80 +0.1 234,061 + HMPREF1058_RS03635 0.80 -0.5 234,122 + HMPREF1058_RS03635 0.87 -1.7 234,253 - -1.5 234,342 + +0.2 234,343 - +1.8 234,349 - +0.1 234,475 + -0.0 234,475 + +0.8 234,476 - -0.5 234,495 + HMPREF1058_RS03630 0.12 -0.3 234,495 + HMPREF1058_RS03630 0.12 +2.8 234,495 + HMPREF1058_RS03630 0.12 -1.8 234,496 - HMPREF1058_RS03630 0.12 +1.4 234,592 + HMPREF1058_RS03630 0.25 +0.7 234,592 + HMPREF1058_RS03630 0.25 +1.1 234,665 + HMPREF1058_RS03630 0.36 +1.5 234,696 - HMPREF1058_RS03630 0.40 +0.8 234,832 + HMPREF1058_RS03630 0.59 +1.4 234,835 - HMPREF1058_RS03630 0.60 -0.5 234,862 - HMPREF1058_RS03630 0.63 -1.5 234,971 - HMPREF1058_RS03630 0.79 -0.2 234,990 - HMPREF1058_RS03630 0.81 +0.4 235,042 - HMPREF1058_RS03630 0.89 +1.7 235,101 + -2.3 235,105 + -0.4 235,146 - -0.8 235,197 - -0.1 235,231 - HMPREF1058_RS03625 0.10 +0.5 235,375 - HMPREF1058_RS03625 0.23 +0.3 235,380 - HMPREF1058_RS03625 0.24 -0.5 235,393 - HMPREF1058_RS03625 0.25 +0.3 235,405 + HMPREF1058_RS03625 0.26 -1.5 235,542 - HMPREF1058_RS03625 0.39 +0.3 235,558 - HMPREF1058_RS03625 0.40 +0.7 235,596 + HMPREF1058_RS03625 0.44 +0.9 235,596 + HMPREF1058_RS03625 0.44 +1.9 235,671 + HMPREF1058_RS03625 0.51 -0.0 235,711 + HMPREF1058_RS03625 0.55 +1.6 235,748 - HMPREF1058_RS03625 0.58 -0.4 235,758 + HMPREF1058_RS03625 0.59 +2.4 235,758 + HMPREF1058_RS03625 0.59 -0.6 235,784 + HMPREF1058_RS03625 0.61 -0.2 235,788 + HMPREF1058_RS03625 0.62 -0.2 235,868 - HMPREF1058_RS03625 0.69 -2.2 235,868 - HMPREF1058_RS03625 0.69 +0.0 235,899 - HMPREF1058_RS03625 0.72 +0.4 235,909 - HMPREF1058_RS03625 0.73 -0.6 235,934 + HMPREF1058_RS03625 0.75 -1.0 236,034 + HMPREF1058_RS03625 0.85 -0.6 236,086 - HMPREF1058_RS03625 0.89 +1.6 236,104 - +1.2 236,110 + -2.1
Or see this region's nucleotide sequence