Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03630

Experiment: Beta-Lactose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS03635 and HMPREF1058_RS03630 are separated by 185 nucleotidesHMPREF1058_RS03630 and HMPREF1058_RS03625 overlap by 1 nucleotides HMPREF1058_RS03635: HMPREF1058_RS03635 - YjbH domain-containing protein, at 233,415 to 234,224 _RS03635 HMPREF1058_RS03630: HMPREF1058_RS03630 - WecB/TagA/CpsF family glycosyltransferase, at 234,410 to 235,123 _RS03630 HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199 _RS03625 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2 3at 233.428 kb on - strandat 233.442 kb on - strandat 233.490 kb on - strandat 233.531 kb on + strand, within HMPREF1058_RS03635at 233.534 kb on - strand, within HMPREF1058_RS03635at 233.544 kb on - strand, within HMPREF1058_RS03635at 233.589 kb on - strand, within HMPREF1058_RS03635at 233.667 kb on - strand, within HMPREF1058_RS03635at 233.668 kb on + strand, within HMPREF1058_RS03635at 233.669 kb on - strand, within HMPREF1058_RS03635at 233.724 kb on - strand, within HMPREF1058_RS03635at 233.767 kb on + strand, within HMPREF1058_RS03635at 233.814 kb on + strand, within HMPREF1058_RS03635at 233.815 kb on - strand, within HMPREF1058_RS03635at 233.815 kb on - strand, within HMPREF1058_RS03635at 233.946 kb on - strand, within HMPREF1058_RS03635at 233.988 kb on + strandat 233.988 kb on + strand, within HMPREF1058_RS03635at 234.006 kb on - strand, within HMPREF1058_RS03635at 234.011 kb on + strand, within HMPREF1058_RS03635at 234.012 kb on - strand, within HMPREF1058_RS03635at 234.012 kb on - strand, within HMPREF1058_RS03635at 234.012 kb on - strand, within HMPREF1058_RS03635at 234.048 kb on + strand, within HMPREF1058_RS03635at 234.050 kb on + strand, within HMPREF1058_RS03635at 234.055 kb on + strand, within HMPREF1058_RS03635at 234.055 kb on + strand, within HMPREF1058_RS03635at 234.056 kb on - strand, within HMPREF1058_RS03635at 234.056 kb on - strand, within HMPREF1058_RS03635at 234.059 kb on + strand, within HMPREF1058_RS03635at 234.061 kb on + strand, within HMPREF1058_RS03635at 234.061 kb on + strand, within HMPREF1058_RS03635at 234.061 kb on + strand, within HMPREF1058_RS03635at 234.122 kb on + strand, within HMPREF1058_RS03635at 234.253 kb on - strandat 234.342 kb on + strandat 234.343 kb on - strandat 234.349 kb on - strandat 234.475 kb on + strandat 234.475 kb on + strandat 234.476 kb on - strandat 234.495 kb on + strand, within HMPREF1058_RS03630at 234.495 kb on + strand, within HMPREF1058_RS03630at 234.495 kb on + strand, within HMPREF1058_RS03630at 234.496 kb on - strand, within HMPREF1058_RS03630at 234.592 kb on + strand, within HMPREF1058_RS03630at 234.592 kb on + strand, within HMPREF1058_RS03630at 234.665 kb on + strand, within HMPREF1058_RS03630at 234.696 kb on - strand, within HMPREF1058_RS03630at 234.832 kb on + strand, within HMPREF1058_RS03630at 234.835 kb on - strand, within HMPREF1058_RS03630at 234.862 kb on - strand, within HMPREF1058_RS03630at 234.971 kb on - strand, within HMPREF1058_RS03630at 234.990 kb on - strand, within HMPREF1058_RS03630at 235.042 kb on - strand, within HMPREF1058_RS03630at 235.101 kb on + strandat 235.105 kb on + strandat 235.146 kb on - strandat 235.197 kb on - strandat 235.231 kb on - strand, within HMPREF1058_RS03625at 235.375 kb on - strand, within HMPREF1058_RS03625at 235.380 kb on - strand, within HMPREF1058_RS03625at 235.393 kb on - strand, within HMPREF1058_RS03625at 235.405 kb on + strand, within HMPREF1058_RS03625at 235.542 kb on - strand, within HMPREF1058_RS03625at 235.558 kb on - strand, within HMPREF1058_RS03625at 235.596 kb on + strand, within HMPREF1058_RS03625at 235.596 kb on + strand, within HMPREF1058_RS03625at 235.671 kb on + strand, within HMPREF1058_RS03625at 235.711 kb on + strand, within HMPREF1058_RS03625at 235.748 kb on - strand, within HMPREF1058_RS03625at 235.758 kb on + strand, within HMPREF1058_RS03625at 235.758 kb on + strand, within HMPREF1058_RS03625at 235.784 kb on + strand, within HMPREF1058_RS03625at 235.788 kb on + strand, within HMPREF1058_RS03625at 235.868 kb on - strand, within HMPREF1058_RS03625at 235.868 kb on - strand, within HMPREF1058_RS03625at 235.899 kb on - strand, within HMPREF1058_RS03625at 235.909 kb on - strand, within HMPREF1058_RS03625at 235.934 kb on + strand, within HMPREF1058_RS03625at 236.034 kb on + strand, within HMPREF1058_RS03625at 236.086 kb on - strand, within HMPREF1058_RS03625at 236.104 kb on - strandat 236.110 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
remove
233,428 - +0.6
233,442 - -0.6
233,490 - -0.2
233,531 + HMPREF1058_RS03635 0.14 -0.8
233,534 - HMPREF1058_RS03635 0.15 +0.1
233,544 - HMPREF1058_RS03635 0.16 -0.5
233,589 - HMPREF1058_RS03635 0.21 +0.3
233,667 - HMPREF1058_RS03635 0.31 -0.2
233,668 + HMPREF1058_RS03635 0.31 -1.7
233,669 - HMPREF1058_RS03635 0.31 -0.8
233,724 - HMPREF1058_RS03635 0.38 -1.1
233,767 + HMPREF1058_RS03635 0.43 +0.7
233,814 + HMPREF1058_RS03635 0.49 -1.1
233,815 - HMPREF1058_RS03635 0.49 -0.1
233,815 - HMPREF1058_RS03635 0.49 -0.0
233,946 - HMPREF1058_RS03635 0.66 +0.8
233,988 + +0.4
233,988 + HMPREF1058_RS03635 0.71 +0.1
234,006 - HMPREF1058_RS03635 0.73 -0.4
234,011 + HMPREF1058_RS03635 0.74 -0.2
234,012 - HMPREF1058_RS03635 0.74 -1.9
234,012 - HMPREF1058_RS03635 0.74 -0.2
234,012 - HMPREF1058_RS03635 0.74 +0.7
234,048 + HMPREF1058_RS03635 0.78 +0.6
234,050 + HMPREF1058_RS03635 0.78 -0.2
234,055 + HMPREF1058_RS03635 0.79 -1.7
234,055 + HMPREF1058_RS03635 0.79 -1.6
234,056 - HMPREF1058_RS03635 0.79 -1.5
234,056 - HMPREF1058_RS03635 0.79 +1.4
234,059 + HMPREF1058_RS03635 0.80 -1.0
234,061 + HMPREF1058_RS03635 0.80 +0.5
234,061 + HMPREF1058_RS03635 0.80 +0.1
234,061 + HMPREF1058_RS03635 0.80 -0.5
234,122 + HMPREF1058_RS03635 0.87 -1.7
234,253 - -1.5
234,342 + +0.2
234,343 - +1.8
234,349 - +0.1
234,475 + -0.0
234,475 + +0.8
234,476 - -0.5
234,495 + HMPREF1058_RS03630 0.12 -0.3
234,495 + HMPREF1058_RS03630 0.12 +2.8
234,495 + HMPREF1058_RS03630 0.12 -1.8
234,496 - HMPREF1058_RS03630 0.12 +1.4
234,592 + HMPREF1058_RS03630 0.25 +0.7
234,592 + HMPREF1058_RS03630 0.25 +1.1
234,665 + HMPREF1058_RS03630 0.36 +1.5
234,696 - HMPREF1058_RS03630 0.40 +0.8
234,832 + HMPREF1058_RS03630 0.59 +1.4
234,835 - HMPREF1058_RS03630 0.60 -0.5
234,862 - HMPREF1058_RS03630 0.63 -1.5
234,971 - HMPREF1058_RS03630 0.79 -0.2
234,990 - HMPREF1058_RS03630 0.81 +0.4
235,042 - HMPREF1058_RS03630 0.89 +1.7
235,101 + -2.3
235,105 + -0.4
235,146 - -0.8
235,197 - -0.1
235,231 - HMPREF1058_RS03625 0.10 +0.5
235,375 - HMPREF1058_RS03625 0.23 +0.3
235,380 - HMPREF1058_RS03625 0.24 -0.5
235,393 - HMPREF1058_RS03625 0.25 +0.3
235,405 + HMPREF1058_RS03625 0.26 -1.5
235,542 - HMPREF1058_RS03625 0.39 +0.3
235,558 - HMPREF1058_RS03625 0.40 +0.7
235,596 + HMPREF1058_RS03625 0.44 +0.9
235,596 + HMPREF1058_RS03625 0.44 +1.9
235,671 + HMPREF1058_RS03625 0.51 -0.0
235,711 + HMPREF1058_RS03625 0.55 +1.6
235,748 - HMPREF1058_RS03625 0.58 -0.4
235,758 + HMPREF1058_RS03625 0.59 +2.4
235,758 + HMPREF1058_RS03625 0.59 -0.6
235,784 + HMPREF1058_RS03625 0.61 -0.2
235,788 + HMPREF1058_RS03625 0.62 -0.2
235,868 - HMPREF1058_RS03625 0.69 -2.2
235,868 - HMPREF1058_RS03625 0.69 +0.0
235,899 - HMPREF1058_RS03625 0.72 +0.4
235,909 - HMPREF1058_RS03625 0.73 -0.6
235,934 + HMPREF1058_RS03625 0.75 -1.0
236,034 + HMPREF1058_RS03625 0.85 -0.6
236,086 - HMPREF1058_RS03625 0.89 +1.6
236,104 - +1.2
236,110 + -2.1

Or see this region's nucleotide sequence