Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03180 and HMPREF1058_RS03175 are separated by 18 nucleotides HMPREF1058_RS03175 and HMPREF1058_RS03170 are separated by 9 nucleotides HMPREF1058_RS03170 and HMPREF1058_RS03165 are separated by 256 nucleotides
HMPREF1058_RS03180: HMPREF1058_RS03180 - V-type ATP synthase subunit A, at 338,843 to 340,597
_RS03180
HMPREF1058_RS03175: HMPREF1058_RS03175 - DUF2764 domain-containing protein, at 340,616 to 341,452
_RS03175
HMPREF1058_RS03170: HMPREF1058_RS03170 - hypothetical protein, at 341,462 to 342,052
_RS03170
HMPREF1058_RS03165: HMPREF1058_RS03165 - 5S ribosomal RNA, at 342,309 to 342,419
_RS03165
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 339.639 kb on + strand, within HMPREF1058_RS03180 at 339.666 kb on + strand, within HMPREF1058_RS03180 at 339.667 kb on - strand, within HMPREF1058_RS03180 at 339.715 kb on + strand, within HMPREF1058_RS03180 at 339.722 kb on - strand at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.740 kb on - strand, within HMPREF1058_RS03180 at 339.901 kb on + strand, within HMPREF1058_RS03180 at 339.921 kb on - strand, within HMPREF1058_RS03180 at 339.943 kb on + strand, within HMPREF1058_RS03180 at 339.943 kb on + strand, within HMPREF1058_RS03180 at 339.970 kb on + strand, within HMPREF1058_RS03180 at 340.003 kb on + strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.096 kb on - strand, within HMPREF1058_RS03180 at 340.126 kb on + strand, within HMPREF1058_RS03180 at 340.128 kb on + strand, within HMPREF1058_RS03180 at 340.132 kb on + strand, within HMPREF1058_RS03180 at 340.238 kb on + strand, within HMPREF1058_RS03180 at 340.278 kb on + strand, within HMPREF1058_RS03180 at 340.279 kb on - strand, within HMPREF1058_RS03180 at 340.446 kb on + strand at 340.447 kb on - strand at 340.547 kb on - strand at 340.597 kb on + strand at 340.597 kb on + strand at 340.598 kb on - strand at 340.640 kb on + strand at 340.814 kb on + strand, within HMPREF1058_RS03175 at 340.991 kb on + strand, within HMPREF1058_RS03175 at 341.003 kb on + strand, within HMPREF1058_RS03175 at 341.004 kb on - strand, within HMPREF1058_RS03175 at 341.004 kb on - strand, within HMPREF1058_RS03175 at 341.070 kb on + strand, within HMPREF1058_RS03175 at 341.079 kb on + strand, within HMPREF1058_RS03175 at 341.091 kb on - strand, within HMPREF1058_RS03175 at 341.136 kb on + strand, within HMPREF1058_RS03175 at 341.161 kb on - strand, within HMPREF1058_RS03175 at 341.170 kb on - strand, within HMPREF1058_RS03175 at 341.257 kb on + strand, within HMPREF1058_RS03175 at 341.257 kb on + strand, within HMPREF1058_RS03175 at 341.384 kb on - strand at 341.385 kb on + strand at 341.463 kb on + strand at 341.477 kb on + strand at 341.653 kb on + strand, within HMPREF1058_RS03170 at 341.726 kb on - strand, within HMPREF1058_RS03170 at 341.739 kb on + strand, within HMPREF1058_RS03170 at 341.739 kb on + strand, within HMPREF1058_RS03170 at 341.804 kb on + strand, within HMPREF1058_RS03170 at 341.805 kb on - strand, within HMPREF1058_RS03170 at 341.805 kb on - strand, within HMPREF1058_RS03170 at 341.849 kb on - strand at 341.898 kb on - strand, within HMPREF1058_RS03170 at 341.965 kb on + strand, within HMPREF1058_RS03170 at 341.971 kb on + strand, within HMPREF1058_RS03170 at 342.044 kb on - strand at 342.058 kb on + strand at 342.099 kb on - strand at 342.195 kb on + strand at 342.196 kb on - strand at 342.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 339,639 + HMPREF1058_RS03180 0.45 -0.2 339,666 + HMPREF1058_RS03180 0.47 -0.7 339,667 - HMPREF1058_RS03180 0.47 +0.5 339,715 + HMPREF1058_RS03180 0.50 +0.0 339,722 - -0.1 339,724 + HMPREF1058_RS03180 0.50 +4.9 339,724 + HMPREF1058_RS03180 0.50 -0.6 339,724 + HMPREF1058_RS03180 0.50 +0.2 339,724 + HMPREF1058_RS03180 0.50 -0.5 339,740 - HMPREF1058_RS03180 0.51 -3.1 339,901 + HMPREF1058_RS03180 0.60 -1.1 339,921 - HMPREF1058_RS03180 0.61 +0.7 339,943 + HMPREF1058_RS03180 0.63 +0.4 339,943 + HMPREF1058_RS03180 0.63 -0.6 339,970 + HMPREF1058_RS03180 0.64 -2.0 340,003 + HMPREF1058_RS03180 0.66 +0.8 340,094 - HMPREF1058_RS03180 0.71 -0.2 340,094 - HMPREF1058_RS03180 0.71 -0.4 340,094 - HMPREF1058_RS03180 0.71 -0.2 340,096 - HMPREF1058_RS03180 0.71 +0.8 340,126 + HMPREF1058_RS03180 0.73 +0.5 340,128 + HMPREF1058_RS03180 0.73 +0.0 340,132 + HMPREF1058_RS03180 0.73 -0.8 340,238 + HMPREF1058_RS03180 0.79 -0.1 340,278 + HMPREF1058_RS03180 0.82 +1.3 340,279 - HMPREF1058_RS03180 0.82 +0.9 340,446 + +0.7 340,447 - +0.5 340,547 - -0.9 340,597 + -2.7 340,597 + +0.4 340,598 - +1.0 340,640 + -0.3 340,814 + HMPREF1058_RS03175 0.24 +0.4 340,991 + HMPREF1058_RS03175 0.45 -0.2 341,003 + HMPREF1058_RS03175 0.46 -1.2 341,004 - HMPREF1058_RS03175 0.46 +1.3 341,004 - HMPREF1058_RS03175 0.46 -0.8 341,070 + HMPREF1058_RS03175 0.54 +1.5 341,079 + HMPREF1058_RS03175 0.55 +1.7 341,091 - HMPREF1058_RS03175 0.57 -0.6 341,136 + HMPREF1058_RS03175 0.62 +1.8 341,161 - HMPREF1058_RS03175 0.65 +1.1 341,170 - HMPREF1058_RS03175 0.66 -1.2 341,257 + HMPREF1058_RS03175 0.77 -1.0 341,257 + HMPREF1058_RS03175 0.77 +2.4 341,384 - +0.8 341,385 + -2.2 341,463 + -1.5 341,477 + +1.1 341,653 + HMPREF1058_RS03170 0.32 +0.5 341,726 - HMPREF1058_RS03170 0.45 +0.9 341,739 + HMPREF1058_RS03170 0.47 -0.3 341,739 + HMPREF1058_RS03170 0.47 +1.0 341,804 + HMPREF1058_RS03170 0.58 +0.1 341,805 - HMPREF1058_RS03170 0.58 -0.5 341,805 - HMPREF1058_RS03170 0.58 -1.3 341,849 - +0.0 341,898 - HMPREF1058_RS03170 0.74 +0.1 341,965 + HMPREF1058_RS03170 0.85 +0.7 341,971 + HMPREF1058_RS03170 0.86 -0.1 342,044 - +0.8 342,058 + +0.4 342,099 - +0.1 342,195 + +1.3 342,196 - +0.4 342,227 - +0.6
Or see this region's nucleotide sequence