Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03100 and HMPREF1058_RS03095 are separated by 73 nucleotides HMPREF1058_RS03095 and HMPREF1058_RS03090 are separated by 381 nucleotides
HMPREF1058_RS03100: HMPREF1058_RS03100 - LPS export ABC transporter ATP-binding protein, at 11,500 to 12,321
_RS03100
HMPREF1058_RS03095: HMPREF1058_RS03095 - RNA-binding protein, at 12,395 to 12,640
_RS03095
HMPREF1058_RS03090: HMPREF1058_RS03090 - trigger factor, at 13,022 to 14,377
_RS03090
Position (kb) 12
13 Strain fitness (log2 ratio) -1
0
1
2
3 at 11.400 kb on - strand at 11.418 kb on - strand at 12.317 kb on + strand at 12.339 kb on + strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.388 kb on + strand at 12.389 kb on - strand at 12.392 kb on + strand at 12.393 kb on - strand at 12.396 kb on + strand at 12.397 kb on - strand at 12.404 kb on - strand at 12.523 kb on + strand, within HMPREF1058_RS03095 at 12.559 kb on + strand, within HMPREF1058_RS03095 at 12.560 kb on - strand, within HMPREF1058_RS03095 at 12.612 kb on + strand, within HMPREF1058_RS03095 at 12.617 kb on - strand at 12.631 kb on - strand at 12.691 kb on + strand at 12.703 kb on - strand at 12.732 kb on - strand at 12.752 kb on + strand at 12.780 kb on - strand at 12.781 kb on + strand at 12.782 kb on - strand at 12.890 kb on - strand at 12.997 kb on - strand at 13.000 kb on - strand at 13.012 kb on - strand at 13.028 kb on - strand at 13.105 kb on - strand at 13.142 kb on - strand at 13.226 kb on - strand, within HMPREF1058_RS03090 at 13.255 kb on + strand, within HMPREF1058_RS03090 at 13.277 kb on - strand, within HMPREF1058_RS03090 at 13.381 kb on + strand, within HMPREF1058_RS03090 at 13.418 kb on + strand, within HMPREF1058_RS03090 at 13.418 kb on + strand, within HMPREF1058_RS03090 at 13.419 kb on - strand, within HMPREF1058_RS03090 at 13.421 kb on - strand, within HMPREF1058_RS03090 at 13.487 kb on + strand, within HMPREF1058_RS03090 at 13.488 kb on - strand, within HMPREF1058_RS03090 at 13.492 kb on + strand, within HMPREF1058_RS03090 at 13.493 kb on - strand, within HMPREF1058_RS03090 at 13.493 kb on - strand, within HMPREF1058_RS03090 at 13.498 kb on - strand, within HMPREF1058_RS03090 at 13.505 kb on + strand, within HMPREF1058_RS03090 at 13.506 kb on - strand, within HMPREF1058_RS03090 at 13.506 kb on - strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.611 kb on - strand, within HMPREF1058_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 11,400 - -1.3 11,418 - -0.4 12,317 + +0.2 12,339 + +0.5 12,382 - +1.0 12,382 - +0.4 12,388 + +0.4 12,389 - -0.0 12,392 + -0.2 12,393 - +0.6 12,396 + -1.3 12,397 - +2.1 12,404 - -0.0 12,523 + HMPREF1058_RS03095 0.52 +1.7 12,559 + HMPREF1058_RS03095 0.67 -0.8 12,560 - HMPREF1058_RS03095 0.67 +1.0 12,612 + HMPREF1058_RS03095 0.88 +0.1 12,617 - +0.7 12,631 - +0.5 12,691 + +1.2 12,703 - +0.9 12,732 - +0.6 12,752 + -0.7 12,780 - +0.7 12,781 + +0.0 12,782 - +0.2 12,890 - -0.1 12,997 - -0.5 13,000 - -1.3 13,012 - +2.4 13,028 - +0.8 13,105 - +3.0 13,142 - +1.5 13,226 - HMPREF1058_RS03090 0.15 -0.5 13,255 + HMPREF1058_RS03090 0.17 +0.3 13,277 - HMPREF1058_RS03090 0.19 +2.9 13,381 + HMPREF1058_RS03090 0.26 +1.0 13,418 + HMPREF1058_RS03090 0.29 +2.7 13,418 + HMPREF1058_RS03090 0.29 +0.9 13,419 - HMPREF1058_RS03090 0.29 +1.0 13,421 - HMPREF1058_RS03090 0.29 -1.6 13,487 + HMPREF1058_RS03090 0.34 +0.2 13,488 - HMPREF1058_RS03090 0.34 -0.2 13,492 + HMPREF1058_RS03090 0.35 +1.5 13,493 - HMPREF1058_RS03090 0.35 +1.3 13,493 - HMPREF1058_RS03090 0.35 +0.6 13,498 - HMPREF1058_RS03090 0.35 -0.7 13,505 + HMPREF1058_RS03090 0.36 +3.0 13,506 - HMPREF1058_RS03090 0.36 +1.3 13,506 - HMPREF1058_RS03090 0.36 +0.1 13,564 + HMPREF1058_RS03090 0.40 +1.5 13,564 + HMPREF1058_RS03090 0.40 -0.3 13,611 - HMPREF1058_RS03090 0.43 +0.9
Or see this region's nucleotide sequence