Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03000 and HMPREF1058_RS02995 are separated by 12 nucleotides HMPREF1058_RS02995 and HMPREF1058_RS02990 are separated by 36 nucleotides HMPREF1058_RS02990 and HMPREF1058_RS02985 are separated by 4 nucleotides
HMPREF1058_RS03000: HMPREF1058_RS03000 - IMP dehydrogenase, at 34,564 to 36,039
_RS03000
HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389
_RS02995
HMPREF1058_RS02990: HMPREF1058_RS02990 - peptidyl-prolyl cis-trans isomerase, at 37,426 to 38,298
_RS02990
HMPREF1058_RS02985: HMPREF1058_RS02985 - peptidylprolyl isomerase, at 38,303 to 39,661
_RS02985
Position (kb) 36
37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 35.160 kb on + strand, within HMPREF1058_RS03000 at 35.160 kb on + strand, within HMPREF1058_RS03000 at 35.161 kb on - strand, within HMPREF1058_RS03000 at 35.173 kb on - strand, within HMPREF1058_RS03000 at 35.176 kb on - strand, within HMPREF1058_RS03000 at 35.388 kb on + strand, within HMPREF1058_RS03000 at 35.397 kb on - strand, within HMPREF1058_RS03000 at 35.401 kb on - strand, within HMPREF1058_RS03000 at 35.481 kb on + strand, within HMPREF1058_RS03000 at 35.537 kb on - strand, within HMPREF1058_RS03000 at 35.568 kb on + strand, within HMPREF1058_RS03000 at 35.568 kb on + strand, within HMPREF1058_RS03000 at 35.569 kb on - strand, within HMPREF1058_RS03000 at 35.640 kb on + strand, within HMPREF1058_RS03000 at 35.641 kb on - strand, within HMPREF1058_RS03000 at 35.692 kb on - strand, within HMPREF1058_RS03000 at 35.776 kb on + strand, within HMPREF1058_RS03000 at 35.838 kb on - strand, within HMPREF1058_RS03000 at 35.838 kb on - strand, within HMPREF1058_RS03000 at 35.924 kb on + strand at 35.924 kb on + strand at 35.924 kb on + strand at 35.925 kb on - strand at 35.925 kb on - strand at 35.958 kb on + strand at 35.959 kb on - strand at 35.972 kb on + strand at 36.022 kb on + strand at 36.023 kb on - strand at 36.044 kb on + strand at 36.131 kb on + strand at 36.175 kb on + strand at 36.234 kb on + strand, within HMPREF1058_RS02995 at 36.234 kb on + strand, within HMPREF1058_RS02995 at 36.239 kb on + strand, within HMPREF1058_RS02995 at 36.245 kb on + strand, within HMPREF1058_RS02995 at 36.261 kb on + strand, within HMPREF1058_RS02995 at 36.270 kb on - strand, within HMPREF1058_RS02995 at 36.273 kb on + strand, within HMPREF1058_RS02995 at 36.273 kb on + strand, within HMPREF1058_RS02995 at 36.274 kb on - strand, within HMPREF1058_RS02995 at 36.274 kb on - strand, within HMPREF1058_RS02995 at 36.439 kb on + strand, within HMPREF1058_RS02995 at 36.503 kb on - strand, within HMPREF1058_RS02995 at 36.684 kb on + strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.787 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 37.070 kb on + strand, within HMPREF1058_RS02995 at 37.071 kb on - strand, within HMPREF1058_RS02995 at 37.075 kb on - strand, within HMPREF1058_RS02995 at 37.075 kb on - strand, within HMPREF1058_RS02995 at 37.147 kb on + strand, within HMPREF1058_RS02995 at 37.149 kb on + strand, within HMPREF1058_RS02995 at 37.200 kb on - strand, within HMPREF1058_RS02995 at 37.330 kb on + strand at 37.332 kb on + strand at 37.371 kb on + strand at 37.391 kb on + strand at 37.425 kb on + strand at 37.463 kb on + strand at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.546 kb on + strand, within HMPREF1058_RS02990 at 37.548 kb on + strand, within HMPREF1058_RS02990 at 37.618 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.778 kb on + strand, within HMPREF1058_RS02990 at 37.830 kb on + strand, within HMPREF1058_RS02990 at 37.932 kb on + strand, within HMPREF1058_RS02990 at 37.981 kb on + strand, within HMPREF1058_RS02990 at 38.087 kb on + strand, within HMPREF1058_RS02990 at 38.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 35,160 + HMPREF1058_RS03000 0.40 -2.0 35,160 + HMPREF1058_RS03000 0.40 -1.0 35,161 - HMPREF1058_RS03000 0.40 -1.8 35,173 - HMPREF1058_RS03000 0.41 -0.0 35,176 - HMPREF1058_RS03000 0.41 -2.9 35,388 + HMPREF1058_RS03000 0.56 -5.1 35,397 - HMPREF1058_RS03000 0.56 -2.9 35,401 - HMPREF1058_RS03000 0.57 -3.0 35,481 + HMPREF1058_RS03000 0.62 -5.7 35,537 - HMPREF1058_RS03000 0.66 -1.6 35,568 + HMPREF1058_RS03000 0.68 -4.1 35,568 + HMPREF1058_RS03000 0.68 -2.5 35,569 - HMPREF1058_RS03000 0.68 -3.3 35,640 + HMPREF1058_RS03000 0.73 -4.8 35,641 - HMPREF1058_RS03000 0.73 -1.7 35,692 - HMPREF1058_RS03000 0.76 -2.9 35,776 + HMPREF1058_RS03000 0.82 -4.4 35,838 - HMPREF1058_RS03000 0.86 -3.3 35,838 - HMPREF1058_RS03000 0.86 -3.3 35,924 + -3.4 35,924 + -4.5 35,924 + -2.1 35,925 - -0.9 35,925 - -2.0 35,958 + -5.4 35,959 - -2.8 35,972 + -0.5 36,022 + -1.8 36,023 - -2.7 36,044 + -1.0 36,131 + +0.8 36,175 + +0.2 36,234 + HMPREF1058_RS02995 0.14 +2.2 36,234 + HMPREF1058_RS02995 0.14 +2.3 36,239 + HMPREF1058_RS02995 0.14 +2.4 36,245 + HMPREF1058_RS02995 0.14 +1.6 36,261 + HMPREF1058_RS02995 0.16 +0.5 36,270 - HMPREF1058_RS02995 0.16 -2.1 36,273 + HMPREF1058_RS02995 0.17 +1.1 36,273 + HMPREF1058_RS02995 0.17 +0.9 36,274 - HMPREF1058_RS02995 0.17 -1.4 36,274 - HMPREF1058_RS02995 0.17 -2.1 36,439 + HMPREF1058_RS02995 0.29 +1.5 36,503 - HMPREF1058_RS02995 0.34 -1.9 36,684 + HMPREF1058_RS02995 0.47 +2.6 36,697 - HMPREF1058_RS02995 0.48 -0.3 36,697 - HMPREF1058_RS02995 0.48 -2.0 36,697 - HMPREF1058_RS02995 0.48 +0.5 36,786 + HMPREF1058_RS02995 0.55 +0.7 36,786 + HMPREF1058_RS02995 0.55 +1.2 36,787 - HMPREF1058_RS02995 0.55 -1.8 36,953 - HMPREF1058_RS02995 0.67 -1.4 36,953 - HMPREF1058_RS02995 0.67 -2.2 37,070 + HMPREF1058_RS02995 0.76 +2.2 37,071 - HMPREF1058_RS02995 0.76 +0.9 37,075 - HMPREF1058_RS02995 0.76 -1.6 37,075 - HMPREF1058_RS02995 0.76 -0.0 37,147 + HMPREF1058_RS02995 0.82 +1.0 37,149 + HMPREF1058_RS02995 0.82 +2.0 37,200 - HMPREF1058_RS02995 0.86 +0.7 37,330 + +2.7 37,332 + +1.3 37,371 + +2.2 37,391 + +2.2 37,425 + +1.8 37,463 + -0.6 37,540 + HMPREF1058_RS02990 0.13 -1.3 37,540 + HMPREF1058_RS02990 0.13 +0.9 37,546 + HMPREF1058_RS02990 0.14 +0.2 37,548 + HMPREF1058_RS02990 0.14 +0.6 37,618 + HMPREF1058_RS02990 0.22 +0.1 37,734 + HMPREF1058_RS02990 0.35 +1.8 37,734 + HMPREF1058_RS02990 0.35 +1.0 37,778 + HMPREF1058_RS02990 0.40 +0.8 37,830 + HMPREF1058_RS02990 0.46 -0.1 37,932 + HMPREF1058_RS02990 0.58 +0.3 37,981 + HMPREF1058_RS02990 0.64 +0.8 38,087 + HMPREF1058_RS02990 0.76 +1.1 38,220 + +0.6
Or see this region's nucleotide sequence