Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02880 and HMPREF1058_RS02875 are separated by 6 nucleotides HMPREF1058_RS02875 and HMPREF1058_RS02870 are separated by 145 nucleotides
HMPREF1058_RS02880: HMPREF1058_RS02880 - tRNA 2-thiouridine(34) synthase MnmA, at 63,779 to 64,843
_RS02880
HMPREF1058_RS02875: HMPREF1058_RS02875 - cysteine synthase A, at 64,850 to 65,800
_RS02875
HMPREF1058_RS02870: HMPREF1058_RS02870 - endonuclease/exonuclease/phosphatase family protein, at 65,946 to 66,884
_RS02870
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.937 kb on + strand, within HMPREF1058_RS02880 at 63.983 kb on + strand, within HMPREF1058_RS02880 at 64.033 kb on - strand, within HMPREF1058_RS02880 at 64.046 kb on - strand, within HMPREF1058_RS02880 at 64.065 kb on + strand, within HMPREF1058_RS02880 at 64.066 kb on - strand, within HMPREF1058_RS02880 at 64.073 kb on - strand, within HMPREF1058_RS02880 at 64.073 kb on - strand, within HMPREF1058_RS02880 at 64.083 kb on - strand, within HMPREF1058_RS02880 at 64.084 kb on + strand, within HMPREF1058_RS02880 at 64.118 kb on + strand, within HMPREF1058_RS02880 at 64.248 kb on + strand, within HMPREF1058_RS02880 at 64.248 kb on + strand, within HMPREF1058_RS02880 at 64.392 kb on - strand, within HMPREF1058_RS02880 at 64.560 kb on - strand, within HMPREF1058_RS02880 at 64.560 kb on - strand, within HMPREF1058_RS02880 at 64.576 kb on + strand, within HMPREF1058_RS02880 at 64.605 kb on + strand, within HMPREF1058_RS02880 at 64.613 kb on + strand, within HMPREF1058_RS02880 at 64.685 kb on - strand, within HMPREF1058_RS02880 at 64.688 kb on + strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.771 kb on - strand at 64.793 kb on + strand at 64.794 kb on - strand at 64.835 kb on + strand at 64.835 kb on + strand at 64.835 kb on + strand at 64.851 kb on + strand at 64.925 kb on + strand at 64.977 kb on + strand, within HMPREF1058_RS02875 at 64.977 kb on + strand, within HMPREF1058_RS02875 at 64.978 kb on - strand, within HMPREF1058_RS02875 at 65.132 kb on + strand, within HMPREF1058_RS02875 at 65.132 kb on + strand, within HMPREF1058_RS02875 at 65.132 kb on + strand, within HMPREF1058_RS02875 at 65.201 kb on + strand, within HMPREF1058_RS02875 at 65.202 kb on - strand, within HMPREF1058_RS02875 at 65.202 kb on - strand, within HMPREF1058_RS02875 at 65.202 kb on - strand, within HMPREF1058_RS02875 at 65.323 kb on + strand, within HMPREF1058_RS02875 at 65.323 kb on + strand, within HMPREF1058_RS02875 at 65.324 kb on - strand, within HMPREF1058_RS02875 at 65.324 kb on - strand, within HMPREF1058_RS02875 at 65.415 kb on - strand, within HMPREF1058_RS02875 at 65.561 kb on + strand, within HMPREF1058_RS02875 at 65.732 kb on - strand at 65.790 kb on - strand at 65.876 kb on + strand at 65.884 kb on - strand at 65.908 kb on - strand at 66.058 kb on + strand at 66.059 kb on - strand, within HMPREF1058_RS02870 at 66.163 kb on - strand, within HMPREF1058_RS02870 at 66.204 kb on + strand, within HMPREF1058_RS02870 at 66.205 kb on - strand, within HMPREF1058_RS02870 at 66.234 kb on + strand, within HMPREF1058_RS02870 at 66.280 kb on + strand, within HMPREF1058_RS02870 at 66.280 kb on + strand, within HMPREF1058_RS02870 at 66.281 kb on - strand, within HMPREF1058_RS02870 at 66.281 kb on - strand, within HMPREF1058_RS02870 at 66.281 kb on - strand, within HMPREF1058_RS02870 at 66.285 kb on - strand, within HMPREF1058_RS02870 at 66.291 kb on - strand, within HMPREF1058_RS02870 at 66.357 kb on + strand, within HMPREF1058_RS02870 at 66.505 kb on + strand, within HMPREF1058_RS02870 at 66.506 kb on - strand, within HMPREF1058_RS02870 at 66.630 kb on - strand, within HMPREF1058_RS02870 at 66.636 kb on - strand, within HMPREF1058_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 63,937 + HMPREF1058_RS02880 0.15 +0.4 63,983 + HMPREF1058_RS02880 0.19 +0.5 64,033 - HMPREF1058_RS02880 0.24 +1.8 64,046 - HMPREF1058_RS02880 0.25 +0.4 64,065 + HMPREF1058_RS02880 0.27 -0.1 64,066 - HMPREF1058_RS02880 0.27 +0.3 64,073 - HMPREF1058_RS02880 0.28 -0.2 64,073 - HMPREF1058_RS02880 0.28 -1.8 64,083 - HMPREF1058_RS02880 0.29 -0.7 64,084 + HMPREF1058_RS02880 0.29 +0.2 64,118 + HMPREF1058_RS02880 0.32 +1.1 64,248 + HMPREF1058_RS02880 0.44 -0.1 64,248 + HMPREF1058_RS02880 0.44 +0.6 64,392 - HMPREF1058_RS02880 0.58 +2.2 64,560 - HMPREF1058_RS02880 0.73 +0.9 64,560 - HMPREF1058_RS02880 0.73 +0.1 64,576 + HMPREF1058_RS02880 0.75 -0.2 64,605 + HMPREF1058_RS02880 0.78 -0.3 64,613 + HMPREF1058_RS02880 0.78 -0.4 64,685 - HMPREF1058_RS02880 0.85 +0.8 64,688 + HMPREF1058_RS02880 0.85 -1.7 64,689 - HMPREF1058_RS02880 0.85 -0.6 64,689 - HMPREF1058_RS02880 0.85 +0.0 64,689 - HMPREF1058_RS02880 0.85 +0.5 64,689 - HMPREF1058_RS02880 0.85 +0.3 64,771 - +0.3 64,793 + +1.2 64,794 - -0.5 64,835 + +0.1 64,835 + +0.1 64,835 + -0.5 64,851 + +0.2 64,925 + +0.1 64,977 + HMPREF1058_RS02875 0.13 +1.1 64,977 + HMPREF1058_RS02875 0.13 -0.1 64,978 - HMPREF1058_RS02875 0.13 -1.2 65,132 + HMPREF1058_RS02875 0.30 -0.8 65,132 + HMPREF1058_RS02875 0.30 +0.7 65,132 + HMPREF1058_RS02875 0.30 +0.6 65,201 + HMPREF1058_RS02875 0.37 -0.8 65,202 - HMPREF1058_RS02875 0.37 +0.7 65,202 - HMPREF1058_RS02875 0.37 +1.3 65,202 - HMPREF1058_RS02875 0.37 +1.4 65,323 + HMPREF1058_RS02875 0.50 +1.0 65,323 + HMPREF1058_RS02875 0.50 +0.6 65,324 - HMPREF1058_RS02875 0.50 +0.8 65,324 - HMPREF1058_RS02875 0.50 +0.4 65,415 - HMPREF1058_RS02875 0.59 +1.1 65,561 + HMPREF1058_RS02875 0.75 -0.0 65,732 - +0.4 65,790 - +0.6 65,876 + +0.0 65,884 - +1.1 65,908 - +0.4 66,058 + +2.7 66,059 - HMPREF1058_RS02870 0.12 -0.4 66,163 - HMPREF1058_RS02870 0.23 -1.7 66,204 + HMPREF1058_RS02870 0.27 +0.0 66,205 - HMPREF1058_RS02870 0.28 -1.5 66,234 + HMPREF1058_RS02870 0.31 -0.8 66,280 + HMPREF1058_RS02870 0.36 +2.1 66,280 + HMPREF1058_RS02870 0.36 -1.0 66,281 - HMPREF1058_RS02870 0.36 +1.2 66,281 - HMPREF1058_RS02870 0.36 -0.4 66,281 - HMPREF1058_RS02870 0.36 -2.0 66,285 - HMPREF1058_RS02870 0.36 -0.3 66,291 - HMPREF1058_RS02870 0.37 +0.8 66,357 + HMPREF1058_RS02870 0.44 +2.3 66,505 + HMPREF1058_RS02870 0.60 -0.3 66,506 - HMPREF1058_RS02870 0.60 -2.4 66,630 - HMPREF1058_RS02870 0.73 -0.2 66,636 - HMPREF1058_RS02870 0.73 -0.5
Or see this region's nucleotide sequence