Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02845 and HMPREF1058_RS02840 are separated by 114 nucleotides HMPREF1058_RS02840 and HMPREF1058_RS02835 are separated by 62 nucleotides
HMPREF1058_RS02845: HMPREF1058_RS02845 - arylsulfatase, at 74,511 to 76,109
_RS02845
HMPREF1058_RS02840: HMPREF1058_RS02840 - beta-galactosidase, at 76,224 to 78,902
_RS02840
HMPREF1058_RS02835: HMPREF1058_RS02835 - family 20 glycosylhydrolase, at 78,965 to 81,046
_RS02835
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.389 kb on + strand, within HMPREF1058_RS02845 at 75.451 kb on + strand, within HMPREF1058_RS02845 at 75.460 kb on - strand, within HMPREF1058_RS02845 at 75.463 kb on + strand, within HMPREF1058_RS02845 at 75.464 kb on - strand, within HMPREF1058_RS02845 at 75.536 kb on - strand, within HMPREF1058_RS02845 at 75.538 kb on + strand, within HMPREF1058_RS02845 at 75.538 kb on + strand, within HMPREF1058_RS02845 at 75.538 kb on + strand, within HMPREF1058_RS02845 at 75.541 kb on + strand, within HMPREF1058_RS02845 at 75.576 kb on - strand, within HMPREF1058_RS02845 at 75.601 kb on + strand, within HMPREF1058_RS02845 at 75.691 kb on - strand at 75.695 kb on + strand at 75.719 kb on - strand, within HMPREF1058_RS02845 at 75.912 kb on + strand, within HMPREF1058_RS02845 at 75.912 kb on + strand, within HMPREF1058_RS02845 at 75.951 kb on + strand at 75.972 kb on + strand at 76.054 kb on - strand at 76.100 kb on + strand at 76.101 kb on - strand at 76.103 kb on - strand at 76.120 kb on + strand at 76.394 kb on - strand at 76.566 kb on - strand, within HMPREF1058_RS02840 at 76.599 kb on + strand, within HMPREF1058_RS02840 at 76.600 kb on - strand, within HMPREF1058_RS02840 at 76.618 kb on + strand, within HMPREF1058_RS02840 at 76.699 kb on - strand, within HMPREF1058_RS02840 at 76.728 kb on + strand, within HMPREF1058_RS02840 at 76.838 kb on + strand, within HMPREF1058_RS02840 at 76.838 kb on + strand, within HMPREF1058_RS02840 at 76.867 kb on + strand, within HMPREF1058_RS02840 at 76.868 kb on - strand, within HMPREF1058_RS02840 at 76.872 kb on - strand, within HMPREF1058_RS02840 at 76.883 kb on + strand, within HMPREF1058_RS02840 at 76.884 kb on - strand, within HMPREF1058_RS02840 at 76.927 kb on + strand, within HMPREF1058_RS02840 at 76.928 kb on - strand, within HMPREF1058_RS02840 at 76.928 kb on - strand, within HMPREF1058_RS02840 at 76.949 kb on + strand, within HMPREF1058_RS02840 at 76.952 kb on + strand, within HMPREF1058_RS02840 at 76.955 kb on - strand, within HMPREF1058_RS02840 at 76.955 kb on - strand, within HMPREF1058_RS02840 at 76.959 kb on - strand, within HMPREF1058_RS02840 at 76.985 kb on - strand, within HMPREF1058_RS02840 at 77.032 kb on + strand, within HMPREF1058_RS02840 at 77.033 kb on - strand, within HMPREF1058_RS02840 at 77.096 kb on + strand, within HMPREF1058_RS02840 at 77.098 kb on + strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.125 kb on - strand, within HMPREF1058_RS02840 at 77.350 kb on - strand, within HMPREF1058_RS02840 at 77.383 kb on - strand, within HMPREF1058_RS02840 at 77.388 kb on - strand, within HMPREF1058_RS02840 at 77.453 kb on - strand at 77.454 kb on + strand, within HMPREF1058_RS02840 at 77.455 kb on - strand, within HMPREF1058_RS02840 at 77.492 kb on - strand, within HMPREF1058_RS02840 at 77.592 kb on + strand, within HMPREF1058_RS02840 at 77.593 kb on - strand, within HMPREF1058_RS02840 at 77.697 kb on + strand, within HMPREF1058_RS02840 at 78.011 kb on + strand, within HMPREF1058_RS02840 at 78.012 kb on - strand, within HMPREF1058_RS02840 at 78.013 kb on + strand, within HMPREF1058_RS02840 at 78.061 kb on - strand, within HMPREF1058_RS02840 at 78.061 kb on - strand, within HMPREF1058_RS02840 at 78.159 kb on + strand, within HMPREF1058_RS02840 at 78.195 kb on + strand, within HMPREF1058_RS02840 at 78.196 kb on - strand, within HMPREF1058_RS02840 at 78.245 kb on - strand, within HMPREF1058_RS02840 at 78.319 kb on - strand, within HMPREF1058_RS02840 at 78.391 kb on + strand, within HMPREF1058_RS02840 at 78.420 kb on + strand, within HMPREF1058_RS02840 at 78.427 kb on - strand, within HMPREF1058_RS02840 at 78.427 kb on - strand, within HMPREF1058_RS02840 at 78.546 kb on - strand, within HMPREF1058_RS02840 at 78.546 kb on - strand, within HMPREF1058_RS02840 at 78.625 kb on + strand, within HMPREF1058_RS02840 at 78.635 kb on + strand at 78.657 kb on + strand at 78.662 kb on - strand at 78.662 kb on - strand at 78.773 kb on - strand at 78.775 kb on - strand at 78.775 kb on - strand at 78.803 kb on - strand at 78.902 kb on + strand at 78.915 kb on + strand at 78.916 kb on - strand at 78.921 kb on - strand at 79.042 kb on - strand at 79.107 kb on + strand at 79.232 kb on + strand, within HMPREF1058_RS02835 at 79.241 kb on - strand, within HMPREF1058_RS02835 at 79.318 kb on + strand, within HMPREF1058_RS02835 at 79.321 kb on - strand, within HMPREF1058_RS02835 at 79.420 kb on - strand, within HMPREF1058_RS02835 at 79.660 kb on - strand, within HMPREF1058_RS02835 at 79.760 kb on + strand, within HMPREF1058_RS02835 at 79.780 kb on + strand, within HMPREF1058_RS02835 at 79.873 kb on - strand, within HMPREF1058_RS02835 at 79.880 kb on + strand, within HMPREF1058_RS02835 at 79.880 kb on + strand, within HMPREF1058_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 75,389 + HMPREF1058_RS02845 0.55 -1.0 75,451 + HMPREF1058_RS02845 0.59 -0.1 75,460 - HMPREF1058_RS02845 0.59 +0.2 75,463 + HMPREF1058_RS02845 0.60 +1.1 75,464 - HMPREF1058_RS02845 0.60 +2.0 75,536 - HMPREF1058_RS02845 0.64 -0.4 75,538 + HMPREF1058_RS02845 0.64 -1.2 75,538 + HMPREF1058_RS02845 0.64 +0.9 75,538 + HMPREF1058_RS02845 0.64 +0.7 75,541 + HMPREF1058_RS02845 0.64 -0.2 75,576 - HMPREF1058_RS02845 0.67 -0.4 75,601 + HMPREF1058_RS02845 0.68 +0.4 75,691 - +2.7 75,695 + +0.1 75,719 - HMPREF1058_RS02845 0.76 +0.9 75,912 + HMPREF1058_RS02845 0.88 -0.3 75,912 + HMPREF1058_RS02845 0.88 -0.0 75,951 + +1.3 75,972 + -1.0 76,054 - +0.4 76,100 + -0.4 76,101 - -0.5 76,103 - -0.5 76,120 + +0.3 76,394 - +1.7 76,566 - HMPREF1058_RS02840 0.13 +0.8 76,599 + HMPREF1058_RS02840 0.14 +0.6 76,600 - HMPREF1058_RS02840 0.14 -1.4 76,618 + HMPREF1058_RS02840 0.15 +0.7 76,699 - HMPREF1058_RS02840 0.18 +0.3 76,728 + HMPREF1058_RS02840 0.19 -0.6 76,838 + HMPREF1058_RS02840 0.23 -0.2 76,838 + HMPREF1058_RS02840 0.23 +1.3 76,867 + HMPREF1058_RS02840 0.24 -1.7 76,868 - HMPREF1058_RS02840 0.24 +0.5 76,872 - HMPREF1058_RS02840 0.24 +0.3 76,883 + HMPREF1058_RS02840 0.25 +0.1 76,884 - HMPREF1058_RS02840 0.25 +0.4 76,927 + HMPREF1058_RS02840 0.26 +0.4 76,928 - HMPREF1058_RS02840 0.26 -0.1 76,928 - HMPREF1058_RS02840 0.26 -0.0 76,949 + HMPREF1058_RS02840 0.27 +0.4 76,952 + HMPREF1058_RS02840 0.27 +0.5 76,955 - HMPREF1058_RS02840 0.27 +0.8 76,955 - HMPREF1058_RS02840 0.27 +0.4 76,959 - HMPREF1058_RS02840 0.27 +0.2 76,985 - HMPREF1058_RS02840 0.28 +0.1 77,032 + HMPREF1058_RS02840 0.30 +0.3 77,033 - HMPREF1058_RS02840 0.30 +1.3 77,096 + HMPREF1058_RS02840 0.33 -0.1 77,098 + HMPREF1058_RS02840 0.33 +0.3 77,099 - HMPREF1058_RS02840 0.33 -1.0 77,099 - HMPREF1058_RS02840 0.33 -0.2 77,099 - HMPREF1058_RS02840 0.33 +0.4 77,099 - HMPREF1058_RS02840 0.33 +1.0 77,125 - HMPREF1058_RS02840 0.34 +0.6 77,350 - HMPREF1058_RS02840 0.42 -0.9 77,383 - HMPREF1058_RS02840 0.43 -0.8 77,388 - HMPREF1058_RS02840 0.43 -0.1 77,453 - -0.7 77,454 + HMPREF1058_RS02840 0.46 +1.4 77,455 - HMPREF1058_RS02840 0.46 -0.3 77,492 - HMPREF1058_RS02840 0.47 +0.4 77,592 + HMPREF1058_RS02840 0.51 +0.1 77,593 - HMPREF1058_RS02840 0.51 -0.3 77,697 + HMPREF1058_RS02840 0.55 -0.2 78,011 + HMPREF1058_RS02840 0.67 -0.1 78,012 - HMPREF1058_RS02840 0.67 +0.7 78,013 + HMPREF1058_RS02840 0.67 -0.7 78,061 - HMPREF1058_RS02840 0.69 -0.0 78,061 - HMPREF1058_RS02840 0.69 -0.5 78,159 + HMPREF1058_RS02840 0.72 +0.8 78,195 + HMPREF1058_RS02840 0.74 +0.2 78,196 - HMPREF1058_RS02840 0.74 -1.8 78,245 - HMPREF1058_RS02840 0.75 +0.4 78,319 - HMPREF1058_RS02840 0.78 +0.5 78,391 + HMPREF1058_RS02840 0.81 -0.1 78,420 + HMPREF1058_RS02840 0.82 +0.6 78,427 - HMPREF1058_RS02840 0.82 -1.0 78,427 - HMPREF1058_RS02840 0.82 +1.6 78,546 - HMPREF1058_RS02840 0.87 +1.7 78,546 - HMPREF1058_RS02840 0.87 +0.0 78,625 + HMPREF1058_RS02840 0.90 -0.7 78,635 + -0.8 78,657 + +1.1 78,662 - -1.1 78,662 - +0.3 78,773 - +0.4 78,775 - +0.2 78,775 - +0.6 78,803 - +0.1 78,902 + +0.9 78,915 + +0.9 78,916 - -0.2 78,921 - -1.0 79,042 - -2.3 79,107 + -0.7 79,232 + HMPREF1058_RS02835 0.13 +0.4 79,241 - HMPREF1058_RS02835 0.13 +1.3 79,318 + HMPREF1058_RS02835 0.17 +0.4 79,321 - HMPREF1058_RS02835 0.17 +0.9 79,420 - HMPREF1058_RS02835 0.22 -1.0 79,660 - HMPREF1058_RS02835 0.33 -0.8 79,760 + HMPREF1058_RS02835 0.38 +1.2 79,780 + HMPREF1058_RS02835 0.39 -0.5 79,873 - HMPREF1058_RS02835 0.44 +0.7 79,880 + HMPREF1058_RS02835 0.44 -0.4 79,880 + HMPREF1058_RS02835 0.44 -0.1
Or see this region's nucleotide sequence