Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02710 and HMPREF1058_RS02705 overlap by 11 nucleotides HMPREF1058_RS02705 and HMPREF1058_RS02700 are separated by 25 nucleotides HMPREF1058_RS02700 and HMPREF1058_RS02695 are separated by 33 nucleotides
HMPREF1058_RS02710: HMPREF1058_RS02710 - transketolase, at 119,958 to 120,803
_RS02710
HMPREF1058_RS02705: HMPREF1058_RS02705 - transketolase, at 120,793 to 121,731
_RS02705
HMPREF1058_RS02700: HMPREF1058_RS02700 - glycerol kinase GlpK, at 121,757 to 123,253
_RS02700
HMPREF1058_RS02695: HMPREF1058_RS02695 - fucose isomerase, at 123,287 to 124,711
_RS02695
Position (kb) 121
122
123
124 Strain fitness (log2 ratio) -1
0
1
2
3 at 120.805 kb on - strand at 120.868 kb on - strand at 120.904 kb on - strand, within HMPREF1058_RS02705 at 121.019 kb on + strand, within HMPREF1058_RS02705 at 121.020 kb on - strand, within HMPREF1058_RS02705 at 121.020 kb on - strand, within HMPREF1058_RS02705 at 121.039 kb on + strand, within HMPREF1058_RS02705 at 121.083 kb on + strand, within HMPREF1058_RS02705 at 121.234 kb on - strand, within HMPREF1058_RS02705 at 121.234 kb on - strand, within HMPREF1058_RS02705 at 121.274 kb on - strand, within HMPREF1058_RS02705 at 121.277 kb on + strand, within HMPREF1058_RS02705 at 121.278 kb on - strand, within HMPREF1058_RS02705 at 121.278 kb on - strand, within HMPREF1058_RS02705 at 121.351 kb on - strand, within HMPREF1058_RS02705 at 121.431 kb on - strand, within HMPREF1058_RS02705 at 121.751 kb on - strand at 121.757 kb on - strand at 121.770 kb on + strand at 121.771 kb on - strand at 121.779 kb on + strand at 121.780 kb on - strand at 121.790 kb on - strand at 121.845 kb on + strand at 121.850 kb on - strand at 122.115 kb on - strand, within HMPREF1058_RS02700 at 122.179 kb on + strand, within HMPREF1058_RS02700 at 122.381 kb on - strand, within HMPREF1058_RS02700 at 122.393 kb on - strand, within HMPREF1058_RS02700 at 122.393 kb on - strand, within HMPREF1058_RS02700 at 122.393 kb on - strand, within HMPREF1058_RS02700 at 122.651 kb on + strand, within HMPREF1058_RS02700 at 122.652 kb on - strand, within HMPREF1058_RS02700 at 122.652 kb on - strand, within HMPREF1058_RS02700 at 122.654 kb on + strand, within HMPREF1058_RS02700 at 123.203 kb on + strand at 123.203 kb on + strand at 123.203 kb on + strand at 123.260 kb on - strand at 123.338 kb on + strand at 123.405 kb on - strand at 123.411 kb on - strand at 123.704 kb on + strand, within HMPREF1058_RS02695 at 123.736 kb on + strand, within HMPREF1058_RS02695 at 123.736 kb on + strand, within HMPREF1058_RS02695 at 123.737 kb on - strand, within HMPREF1058_RS02695 at 123.737 kb on - strand, within HMPREF1058_RS02695 at 123.775 kb on + strand, within HMPREF1058_RS02695 at 123.778 kb on + strand, within HMPREF1058_RS02695 at 123.975 kb on + strand, within HMPREF1058_RS02695 at 124.025 kb on + strand, within HMPREF1058_RS02695 at 124.026 kb on - strand, within HMPREF1058_RS02695 at 124.026 kb on - strand, within HMPREF1058_RS02695 at 124.104 kb on + strand, within HMPREF1058_RS02695 at 124.104 kb on + strand at 124.139 kb on + strand, within HMPREF1058_RS02695 at 124.162 kb on + strand, within HMPREF1058_RS02695 at 124.228 kb on + strand, within HMPREF1058_RS02695 at 124.232 kb on + strand, within HMPREF1058_RS02695 at 124.233 kb on - strand, within HMPREF1058_RS02695 at 124.233 kb on - strand, within HMPREF1058_RS02695
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 120,805 - +0.9 120,868 - -0.7 120,904 - HMPREF1058_RS02705 0.12 -1.7 121,019 + HMPREF1058_RS02705 0.24 -1.2 121,020 - HMPREF1058_RS02705 0.24 -0.5 121,020 - HMPREF1058_RS02705 0.24 +0.4 121,039 + HMPREF1058_RS02705 0.26 -0.2 121,083 + HMPREF1058_RS02705 0.31 +0.8 121,234 - HMPREF1058_RS02705 0.47 +0.4 121,234 - HMPREF1058_RS02705 0.47 -0.2 121,274 - HMPREF1058_RS02705 0.51 +0.5 121,277 + HMPREF1058_RS02705 0.52 -0.0 121,278 - HMPREF1058_RS02705 0.52 +0.2 121,278 - HMPREF1058_RS02705 0.52 -0.6 121,351 - HMPREF1058_RS02705 0.59 -0.0 121,431 - HMPREF1058_RS02705 0.68 -0.6 121,751 - +1.3 121,757 - -0.0 121,770 + +0.7 121,771 - -0.3 121,779 + +0.3 121,780 - +1.7 121,790 - -0.4 121,845 + +0.3 121,850 - +0.3 122,115 - HMPREF1058_RS02700 0.24 +3.5 122,179 + HMPREF1058_RS02700 0.28 +0.1 122,381 - HMPREF1058_RS02700 0.42 -0.2 122,393 - HMPREF1058_RS02700 0.42 +0.7 122,393 - HMPREF1058_RS02700 0.42 +0.2 122,393 - HMPREF1058_RS02700 0.42 +0.1 122,651 + HMPREF1058_RS02700 0.60 +0.3 122,652 - HMPREF1058_RS02700 0.60 -1.7 122,652 - HMPREF1058_RS02700 0.60 -0.6 122,654 + HMPREF1058_RS02700 0.60 +1.1 123,203 + +0.7 123,203 + -0.3 123,203 + -0.5 123,260 - -0.8 123,338 + +0.7 123,405 - +0.6 123,411 - +0.5 123,704 + HMPREF1058_RS02695 0.29 -0.1 123,736 + HMPREF1058_RS02695 0.32 -0.7 123,736 + HMPREF1058_RS02695 0.32 -1.4 123,737 - HMPREF1058_RS02695 0.32 +0.3 123,737 - HMPREF1058_RS02695 0.32 +0.1 123,775 + HMPREF1058_RS02695 0.34 -0.1 123,778 + HMPREF1058_RS02695 0.34 -0.1 123,975 + HMPREF1058_RS02695 0.48 -0.4 124,025 + HMPREF1058_RS02695 0.52 +0.4 124,026 - HMPREF1058_RS02695 0.52 +0.1 124,026 - HMPREF1058_RS02695 0.52 +0.2 124,104 + HMPREF1058_RS02695 0.57 +0.2 124,104 + +1.5 124,139 + HMPREF1058_RS02695 0.60 -0.9 124,162 + HMPREF1058_RS02695 0.61 -0.5 124,228 + HMPREF1058_RS02695 0.66 -0.7 124,232 + HMPREF1058_RS02695 0.66 -0.4 124,233 - HMPREF1058_RS02695 0.66 +0.2 124,233 - HMPREF1058_RS02695 0.66 +0.0
Or see this region's nucleotide sequence