Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02675 and HMPREF1058_RS02670 are separated by 10 nucleotides HMPREF1058_RS02670 and HMPREF1058_RS02665 are separated by 1 nucleotides HMPREF1058_RS02665 and HMPREF1058_RS02660 overlap by 4 nucleotides
HMPREF1058_RS02675: HMPREF1058_RS02675 - CRISPR-associated helicase/endonuclease Cas3, at 128,520 to 130,745
_RS02675
HMPREF1058_RS02670: HMPREF1058_RS02670 - Bro-N domain-containing protein, at 130,756 to 131,616
_RS02670
HMPREF1058_RS02665: HMPREF1058_RS02665 - type I-C CRISPR-associated protein Cas5, at 131,618 to 132,298
_RS02665
HMPREF1058_RS02660: HMPREF1058_RS02660 - type I-C CRISPR-associated protein Cas8c/Csd1, at 132,295 to 134,016
_RS02660
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.645 kb on + strand at 130.657 kb on + strand at 130.658 kb on - strand at 130.659 kb on + strand at 130.688 kb on + strand at 130.713 kb on - strand at 130.733 kb on - strand at 130.741 kb on + strand at 130.744 kb on - strand at 130.744 kb on - strand at 130.744 kb on - strand at 130.795 kb on - strand at 130.918 kb on - strand, within HMPREF1058_RS02670 at 131.085 kb on - strand, within HMPREF1058_RS02670 at 131.140 kb on - strand, within HMPREF1058_RS02670 at 131.150 kb on - strand, within HMPREF1058_RS02670 at 131.150 kb on - strand, within HMPREF1058_RS02670 at 131.241 kb on + strand, within HMPREF1058_RS02670 at 131.241 kb on + strand, within HMPREF1058_RS02670 at 131.242 kb on - strand, within HMPREF1058_RS02670 at 131.242 kb on - strand, within HMPREF1058_RS02670 at 131.242 kb on - strand, within HMPREF1058_RS02670 at 131.268 kb on + strand, within HMPREF1058_RS02670 at 131.269 kb on - strand, within HMPREF1058_RS02670 at 131.283 kb on + strand, within HMPREF1058_RS02670 at 131.284 kb on - strand, within HMPREF1058_RS02670 at 131.284 kb on - strand, within HMPREF1058_RS02670 at 131.284 kb on - strand, within HMPREF1058_RS02670 at 131.321 kb on - strand, within HMPREF1058_RS02670 at 131.365 kb on - strand, within HMPREF1058_RS02670 at 131.388 kb on + strand, within HMPREF1058_RS02670 at 131.418 kb on + strand, within HMPREF1058_RS02670 at 131.419 kb on - strand, within HMPREF1058_RS02670 at 131.425 kb on - strand, within HMPREF1058_RS02670 at 131.457 kb on + strand, within HMPREF1058_RS02670 at 131.538 kb on - strand at 131.639 kb on + strand at 131.695 kb on - strand, within HMPREF1058_RS02665 at 131.815 kb on + strand, within HMPREF1058_RS02665 at 131.869 kb on + strand, within HMPREF1058_RS02665 at 131.884 kb on + strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.936 kb on + strand, within HMPREF1058_RS02665 at 132.020 kb on - strand, within HMPREF1058_RS02665 at 132.027 kb on - strand, within HMPREF1058_RS02665 at 132.175 kb on + strand, within HMPREF1058_RS02665 at 132.233 kb on - strand at 132.312 kb on - strand at 132.319 kb on + strand at 132.320 kb on - strand at 132.397 kb on - strand at 132.435 kb on - strand at 132.439 kb on - strand at 132.522 kb on + strand, within HMPREF1058_RS02660 at 132.526 kb on + strand, within HMPREF1058_RS02660 at 132.531 kb on - strand, within HMPREF1058_RS02660 at 132.566 kb on + strand, within HMPREF1058_RS02660 at 132.567 kb on - strand, within HMPREF1058_RS02660 at 132.570 kb on + strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.584 kb on + strand, within HMPREF1058_RS02660 at 132.585 kb on - strand, within HMPREF1058_RS02660 at 132.607 kb on - strand, within HMPREF1058_RS02660 at 132.609 kb on - strand, within HMPREF1058_RS02660 at 132.611 kb on - strand, within HMPREF1058_RS02660 at 132.685 kb on - strand, within HMPREF1058_RS02660 at 132.717 kb on + strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.764 kb on + strand, within HMPREF1058_RS02660 at 132.765 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.976 kb on - strand, within HMPREF1058_RS02660 at 132.982 kb on + strand, within HMPREF1058_RS02660 at 132.983 kb on - strand, within HMPREF1058_RS02660 at 133.019 kb on - strand, within HMPREF1058_RS02660 at 133.020 kb on + strand, within HMPREF1058_RS02660 at 133.021 kb on - strand, within HMPREF1058_RS02660 at 133.088 kb on - strand, within HMPREF1058_RS02660 at 133.142 kb on + strand, within HMPREF1058_RS02660 at 133.205 kb on + strand, within HMPREF1058_RS02660 at 133.206 kb on - strand, within HMPREF1058_RS02660 at 133.208 kb on - strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 130,645 + +0.1 130,657 + +0.2 130,658 - -0.2 130,659 + -0.5 130,688 + +0.6 130,713 - +0.4 130,733 - -1.2 130,741 + +0.2 130,744 - -0.2 130,744 - +0.7 130,744 - -1.4 130,795 - +2.1 130,918 - HMPREF1058_RS02670 0.19 +0.5 131,085 - HMPREF1058_RS02670 0.38 -0.4 131,140 - HMPREF1058_RS02670 0.45 +0.5 131,150 - HMPREF1058_RS02670 0.46 -0.2 131,150 - HMPREF1058_RS02670 0.46 -0.9 131,241 + HMPREF1058_RS02670 0.56 -0.2 131,241 + HMPREF1058_RS02670 0.56 -0.4 131,242 - HMPREF1058_RS02670 0.56 +0.8 131,242 - HMPREF1058_RS02670 0.56 +0.6 131,242 - HMPREF1058_RS02670 0.56 -0.5 131,268 + HMPREF1058_RS02670 0.59 +0.5 131,269 - HMPREF1058_RS02670 0.60 +0.6 131,283 + HMPREF1058_RS02670 0.61 +0.1 131,284 - HMPREF1058_RS02670 0.61 +1.2 131,284 - HMPREF1058_RS02670 0.61 +0.2 131,284 - HMPREF1058_RS02670 0.61 +0.2 131,321 - HMPREF1058_RS02670 0.66 +1.6 131,365 - HMPREF1058_RS02670 0.71 -0.2 131,388 + HMPREF1058_RS02670 0.73 +0.9 131,418 + HMPREF1058_RS02670 0.77 -1.2 131,419 - HMPREF1058_RS02670 0.77 -0.4 131,425 - HMPREF1058_RS02670 0.78 -0.6 131,457 + HMPREF1058_RS02670 0.81 +0.8 131,538 - +0.3 131,639 + -1.3 131,695 - HMPREF1058_RS02665 0.11 -0.5 131,815 + HMPREF1058_RS02665 0.29 +0.4 131,869 + HMPREF1058_RS02665 0.37 +1.3 131,884 + HMPREF1058_RS02665 0.39 +0.4 131,885 - HMPREF1058_RS02665 0.39 +1.6 131,885 - HMPREF1058_RS02665 0.39 +0.1 131,936 + HMPREF1058_RS02665 0.47 -0.8 132,020 - HMPREF1058_RS02665 0.59 +0.2 132,027 - HMPREF1058_RS02665 0.60 +1.0 132,175 + HMPREF1058_RS02665 0.82 +1.6 132,233 - +1.6 132,312 - +0.7 132,319 + +0.1 132,320 - +0.4 132,397 - +0.1 132,435 - -0.0 132,439 - -1.4 132,522 + HMPREF1058_RS02660 0.13 +0.2 132,526 + HMPREF1058_RS02660 0.13 +0.6 132,531 - HMPREF1058_RS02660 0.14 +0.1 132,566 + HMPREF1058_RS02660 0.16 +0.7 132,567 - HMPREF1058_RS02660 0.16 -0.3 132,570 + HMPREF1058_RS02660 0.16 -0.7 132,571 - HMPREF1058_RS02660 0.16 +0.9 132,571 - HMPREF1058_RS02660 0.16 -0.0 132,571 - HMPREF1058_RS02660 0.16 -0.2 132,584 + HMPREF1058_RS02660 0.17 +0.4 132,585 - HMPREF1058_RS02660 0.17 -0.3 132,607 - HMPREF1058_RS02660 0.18 +0.9 132,609 - HMPREF1058_RS02660 0.18 -1.1 132,611 - HMPREF1058_RS02660 0.18 -0.1 132,685 - HMPREF1058_RS02660 0.23 +0.4 132,717 + HMPREF1058_RS02660 0.25 +0.2 132,718 - HMPREF1058_RS02660 0.25 +0.1 132,718 - HMPREF1058_RS02660 0.25 -0.2 132,764 + HMPREF1058_RS02660 0.27 +0.3 132,765 - HMPREF1058_RS02660 0.27 -1.0 132,903 - HMPREF1058_RS02660 0.35 -2.0 132,903 - HMPREF1058_RS02660 0.35 +1.4 132,903 - HMPREF1058_RS02660 0.35 +0.8 132,976 - HMPREF1058_RS02660 0.40 -0.8 132,982 + HMPREF1058_RS02660 0.40 -0.3 132,983 - HMPREF1058_RS02660 0.40 +0.2 133,019 - HMPREF1058_RS02660 0.42 +1.0 133,020 + HMPREF1058_RS02660 0.42 -0.3 133,021 - HMPREF1058_RS02660 0.42 -0.4 133,088 - HMPREF1058_RS02660 0.46 +0.3 133,142 + HMPREF1058_RS02660 0.49 -0.1 133,205 + HMPREF1058_RS02660 0.53 +0.1 133,206 - HMPREF1058_RS02660 0.53 -0.5 133,208 - HMPREF1058_RS02660 0.53 -0.6 133,228 + HMPREF1058_RS02660 0.54 -0.0 133,228 + HMPREF1058_RS02660 0.54 -0.1 133,229 - -1.3
Or see this region's nucleotide sequence