Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02375

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02380 and HMPREF1058_RS02375 are separated by 20 nucleotidesHMPREF1058_RS02375 and HMPREF1058_RS02370 are separated by 31 nucleotides HMPREF1058_RS02380: HMPREF1058_RS02380 - TonB-dependent receptor, at 204,270 to 207,686 _RS02380 HMPREF1058_RS02375: HMPREF1058_RS02375 - RagB/SusD family nutrient uptake outer membrane protein, at 207,707 to 209,242 _RS02375 HMPREF1058_RS02370: HMPREF1058_RS02370 - glycoside hydrolase, at 209,274 to 211,343 _RS02370 Position (kb) 207 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.730 kb on - strand, within HMPREF1058_RS02380at 206.732 kb on + strand, within HMPREF1058_RS02380at 206.733 kb on - strand, within HMPREF1058_RS02380at 206.787 kb on - strand, within HMPREF1058_RS02380at 206.796 kb on - strand, within HMPREF1058_RS02380at 206.813 kb on + strand, within HMPREF1058_RS02380at 206.813 kb on + strand, within HMPREF1058_RS02380at 206.925 kb on - strand, within HMPREF1058_RS02380at 206.940 kb on + strand, within HMPREF1058_RS02380at 206.940 kb on + strand, within HMPREF1058_RS02380at 206.941 kb on - strand, within HMPREF1058_RS02380at 206.947 kb on - strand, within HMPREF1058_RS02380at 206.953 kb on - strand, within HMPREF1058_RS02380at 206.953 kb on - strand, within HMPREF1058_RS02380at 206.970 kb on + strand, within HMPREF1058_RS02380at 206.970 kb on + strand, within HMPREF1058_RS02380at 206.970 kb on + strand, within HMPREF1058_RS02380at 206.971 kb on - strand, within HMPREF1058_RS02380at 206.971 kb on - strand, within HMPREF1058_RS02380at 206.971 kb on - strand, within HMPREF1058_RS02380at 206.971 kb on - strand, within HMPREF1058_RS02380at 206.974 kb on + strand, within HMPREF1058_RS02380at 206.975 kb on - strand, within HMPREF1058_RS02380at 207.066 kb on + strand, within HMPREF1058_RS02380at 207.221 kb on + strand, within HMPREF1058_RS02380at 207.234 kb on - strand, within HMPREF1058_RS02380at 207.279 kb on - strand, within HMPREF1058_RS02380at 207.279 kb on - strand, within HMPREF1058_RS02380at 207.287 kb on + strand, within HMPREF1058_RS02380at 207.287 kb on + strand, within HMPREF1058_RS02380at 207.293 kb on + strand, within HMPREF1058_RS02380at 207.293 kb on + strand, within HMPREF1058_RS02380at 207.296 kb on + strand, within HMPREF1058_RS02380at 207.333 kb on + strand, within HMPREF1058_RS02380at 207.333 kb on + strand, within HMPREF1058_RS02380at 207.333 kb on + strand, within HMPREF1058_RS02380at 207.411 kb on - strandat 207.482 kb on - strandat 207.504 kb on + strandat 207.509 kb on + strandat 207.536 kb on + strandat 207.540 kb on + strandat 207.630 kb on + strandat 207.684 kb on + strandat 207.697 kb on + strandat 207.706 kb on + strandat 207.707 kb on - strandat 207.726 kb on + strandat 207.729 kb on + strandat 207.729 kb on + strandat 207.732 kb on - strandat 207.732 kb on - strandat 207.844 kb on + strandat 207.860 kb on - strandat 207.921 kb on + strand, within HMPREF1058_RS02375at 207.982 kb on + strand, within HMPREF1058_RS02375at 208.043 kb on + strand, within HMPREF1058_RS02375at 208.044 kb on - strand, within HMPREF1058_RS02375at 208.054 kb on + strand, within HMPREF1058_RS02375at 208.093 kb on - strand, within HMPREF1058_RS02375at 208.212 kb on - strand, within HMPREF1058_RS02375at 208.278 kb on + strand, within HMPREF1058_RS02375at 208.366 kb on + strand, within HMPREF1058_RS02375at 208.394 kb on + strand, within HMPREF1058_RS02375at 208.394 kb on + strand, within HMPREF1058_RS02375at 208.395 kb on - strand, within HMPREF1058_RS02375at 208.397 kb on - strand, within HMPREF1058_RS02375at 208.397 kb on - strand, within HMPREF1058_RS02375at 208.519 kb on + strand, within HMPREF1058_RS02375at 208.571 kb on + strand, within HMPREF1058_RS02375at 208.577 kb on + strand, within HMPREF1058_RS02375at 208.577 kb on + strand, within HMPREF1058_RS02375at 208.579 kb on + strand, within HMPREF1058_RS02375at 208.580 kb on - strand, within HMPREF1058_RS02375at 208.607 kb on - strand, within HMPREF1058_RS02375at 208.626 kb on - strand, within HMPREF1058_RS02375at 208.684 kb on - strand, within HMPREF1058_RS02375at 208.691 kb on - strand, within HMPREF1058_RS02375at 208.715 kb on - strand, within HMPREF1058_RS02375at 208.720 kb on + strand, within HMPREF1058_RS02375at 208.756 kb on + strand, within HMPREF1058_RS02375at 208.815 kb on - strand, within HMPREF1058_RS02375at 208.834 kb on + strand, within HMPREF1058_RS02375at 208.856 kb on - strand, within HMPREF1058_RS02375at 208.893 kb on + strand, within HMPREF1058_RS02375at 208.894 kb on - strand, within HMPREF1058_RS02375at 208.954 kb on - strand, within HMPREF1058_RS02375at 208.999 kb on + strand, within HMPREF1058_RS02375at 209.009 kb on - strand, within HMPREF1058_RS02375at 209.082 kb on - strand, within HMPREF1058_RS02375at 209.082 kb on - strand, within HMPREF1058_RS02375at 209.106 kb on + strandat 209.155 kb on - strandat 209.179 kb on + strandat 209.241 kb on - strandat 209.292 kb on - strandat 209.294 kb on - strandat 209.426 kb on - strandat 209.574 kb on - strand, within HMPREF1058_RS02370at 209.612 kb on + strand, within HMPREF1058_RS02370at 209.631 kb on + strand, within HMPREF1058_RS02370at 209.632 kb on - strand, within HMPREF1058_RS02370at 209.650 kb on + strand, within HMPREF1058_RS02370at 209.650 kb on + strand, within HMPREF1058_RS02370at 209.650 kb on + strand, within HMPREF1058_RS02370at 209.733 kb on - strand, within HMPREF1058_RS02370at 209.735 kb on + strand, within HMPREF1058_RS02370at 209.850 kb on + strand, within HMPREF1058_RS02370at 210.001 kb on - strandat 210.001 kb on - strand, within HMPREF1058_RS02370at 210.024 kb on + strand, within HMPREF1058_RS02370at 210.026 kb on + strand, within HMPREF1058_RS02370at 210.081 kb on + strand, within HMPREF1058_RS02370at 210.182 kb on + strand, within HMPREF1058_RS02370

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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206,730 - HMPREF1058_RS02380 0.72 -1.1
206,732 + HMPREF1058_RS02380 0.72 +1.9
206,733 - HMPREF1058_RS02380 0.72 -0.3
206,787 - HMPREF1058_RS02380 0.74 +1.1
206,796 - HMPREF1058_RS02380 0.74 +1.2
206,813 + HMPREF1058_RS02380 0.74 -0.3
206,813 + HMPREF1058_RS02380 0.74 +0.2
206,925 - HMPREF1058_RS02380 0.78 +0.2
206,940 + HMPREF1058_RS02380 0.78 -0.2
206,940 + HMPREF1058_RS02380 0.78 +1.0
206,941 - HMPREF1058_RS02380 0.78 -1.7
206,947 - HMPREF1058_RS02380 0.78 -0.3
206,953 - HMPREF1058_RS02380 0.79 -0.9
206,953 - HMPREF1058_RS02380 0.79 +0.1
206,970 + HMPREF1058_RS02380 0.79 +1.1
206,970 + HMPREF1058_RS02380 0.79 +2.6
206,970 + HMPREF1058_RS02380 0.79 +0.8
206,971 - HMPREF1058_RS02380 0.79 +2.7
206,971 - HMPREF1058_RS02380 0.79 -0.9
206,971 - HMPREF1058_RS02380 0.79 +0.1
206,971 - HMPREF1058_RS02380 0.79 -0.2
206,974 + HMPREF1058_RS02380 0.79 -1.5
206,975 - HMPREF1058_RS02380 0.79 -0.2
207,066 + HMPREF1058_RS02380 0.82 +1.7
207,221 + HMPREF1058_RS02380 0.86 +0.6
207,234 - HMPREF1058_RS02380 0.87 -0.5
207,279 - HMPREF1058_RS02380 0.88 -2.2
207,279 - HMPREF1058_RS02380 0.88 -0.8
207,287 + HMPREF1058_RS02380 0.88 +0.8
207,287 + HMPREF1058_RS02380 0.88 +1.3
207,293 + HMPREF1058_RS02380 0.88 +1.2
207,293 + HMPREF1058_RS02380 0.88 +0.9
207,296 + HMPREF1058_RS02380 0.89 +0.6
207,333 + HMPREF1058_RS02380 0.90 +0.4
207,333 + HMPREF1058_RS02380 0.90 +1.6
207,333 + HMPREF1058_RS02380 0.90 +1.6
207,411 - +1.1
207,482 - -0.8
207,504 + +1.5
207,509 + +1.9
207,536 + +1.6
207,540 + +1.5
207,630 + +2.7
207,684 + +0.8
207,697 + -0.8
207,706 + +0.3
207,707 - +0.4
207,726 + +0.2
207,729 + +0.2
207,729 + -0.0
207,732 - -0.1
207,732 - +1.5
207,844 + +0.7
207,860 - +0.1
207,921 + HMPREF1058_RS02375 0.14 +3.5
207,982 + HMPREF1058_RS02375 0.18 +0.6
208,043 + HMPREF1058_RS02375 0.22 -0.4
208,044 - HMPREF1058_RS02375 0.22 +0.7
208,054 + HMPREF1058_RS02375 0.23 +0.5
208,093 - HMPREF1058_RS02375 0.25 +0.2
208,212 - HMPREF1058_RS02375 0.33 -1.2
208,278 + HMPREF1058_RS02375 0.37 +0.6
208,366 + HMPREF1058_RS02375 0.43 +0.8
208,394 + HMPREF1058_RS02375 0.45 +0.9
208,394 + HMPREF1058_RS02375 0.45 +0.5
208,395 - HMPREF1058_RS02375 0.45 +0.3
208,397 - HMPREF1058_RS02375 0.45 +2.7
208,397 - HMPREF1058_RS02375 0.45 +0.4
208,519 + HMPREF1058_RS02375 0.53 +0.1
208,571 + HMPREF1058_RS02375 0.56 +0.8
208,577 + HMPREF1058_RS02375 0.57 +1.0
208,577 + HMPREF1058_RS02375 0.57 +1.2
208,579 + HMPREF1058_RS02375 0.57 +1.2
208,580 - HMPREF1058_RS02375 0.57 +1.4
208,607 - HMPREF1058_RS02375 0.59 +0.1
208,626 - HMPREF1058_RS02375 0.60 -0.4
208,684 - HMPREF1058_RS02375 0.64 +0.1
208,691 - HMPREF1058_RS02375 0.64 +0.3
208,715 - HMPREF1058_RS02375 0.66 +3.6
208,720 + HMPREF1058_RS02375 0.66 +2.1
208,756 + HMPREF1058_RS02375 0.68 +0.9
208,815 - HMPREF1058_RS02375 0.72 +0.7
208,834 + HMPREF1058_RS02375 0.73 +2.0
208,856 - HMPREF1058_RS02375 0.75 +0.1
208,893 + HMPREF1058_RS02375 0.77 +2.6
208,894 - HMPREF1058_RS02375 0.77 +0.2
208,954 - HMPREF1058_RS02375 0.81 +0.6
208,999 + HMPREF1058_RS02375 0.84 +1.1
209,009 - HMPREF1058_RS02375 0.85 -0.8
209,082 - HMPREF1058_RS02375 0.90 -0.1
209,082 - HMPREF1058_RS02375 0.90 +1.1
209,106 + +1.4
209,155 - +0.5
209,179 + +1.7
209,241 - +0.4
209,292 - -0.2
209,294 - +0.8
209,426 - +1.4
209,574 - HMPREF1058_RS02370 0.14 -0.3
209,612 + HMPREF1058_RS02370 0.16 +0.4
209,631 + HMPREF1058_RS02370 0.17 +0.3
209,632 - HMPREF1058_RS02370 0.17 -2.0
209,650 + HMPREF1058_RS02370 0.18 +0.3
209,650 + HMPREF1058_RS02370 0.18 +0.2
209,650 + HMPREF1058_RS02370 0.18 -0.5
209,733 - HMPREF1058_RS02370 0.22 -0.8
209,735 + HMPREF1058_RS02370 0.22 +0.2
209,850 + HMPREF1058_RS02370 0.28 -1.4
210,001 - +1.3
210,001 - HMPREF1058_RS02370 0.35 +0.2
210,024 + HMPREF1058_RS02370 0.36 -0.6
210,026 + HMPREF1058_RS02370 0.36 -0.7
210,081 + HMPREF1058_RS02370 0.39 -1.0
210,182 + HMPREF1058_RS02370 0.44 -0.3

Or see this region's nucleotide sequence