Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02365

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02370 and HMPREF1058_RS02365 are separated by 55 nucleotidesHMPREF1058_RS02365 and HMPREF1058_RS02360 are separated by 186 nucleotides HMPREF1058_RS02370: HMPREF1058_RS02370 - glycoside hydrolase, at 209,274 to 211,343 _RS02370 HMPREF1058_RS02365: HMPREF1058_RS02365 - DUF4981 domain-containing protein, at 211,399 to 214,629 _RS02365 HMPREF1058_RS02360: HMPREF1058_RS02360 - RagB/SusD family nutrient uptake outer membrane protein, at 214,816 to 216,633 _RS02360 Position (kb) 211 212 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 210.441 kb on + strand, within HMPREF1058_RS02370at 210.443 kb on + strand, within HMPREF1058_RS02370at 210.444 kb on - strand, within HMPREF1058_RS02370at 210.456 kb on - strand, within HMPREF1058_RS02370at 210.622 kb on - strand, within HMPREF1058_RS02370at 210.638 kb on + strand, within HMPREF1058_RS02370at 210.639 kb on - strand, within HMPREF1058_RS02370at 210.771 kb on + strand, within HMPREF1058_RS02370at 210.772 kb on - strand, within HMPREF1058_RS02370at 210.807 kb on - strand, within HMPREF1058_RS02370at 210.867 kb on + strand, within HMPREF1058_RS02370at 210.872 kb on - strand, within HMPREF1058_RS02370at 210.886 kb on - strand, within HMPREF1058_RS02370at 210.983 kb on + strand, within HMPREF1058_RS02370at 211.065 kb on - strand, within HMPREF1058_RS02370at 211.075 kb on + strand, within HMPREF1058_RS02370at 211.075 kb on + strand, within HMPREF1058_RS02370at 211.076 kb on - strand, within HMPREF1058_RS02370at 211.098 kb on - strand, within HMPREF1058_RS02370at 211.138 kb on + strandat 211.395 kb on - strandat 211.398 kb on + strandat 211.399 kb on - strandat 211.399 kb on - strandat 211.416 kb on + strandat 211.417 kb on - strandat 211.417 kb on - strandat 211.419 kb on - strandat 211.523 kb on + strandat 211.523 kb on + strandat 211.523 kb on + strandat 211.523 kb on + strandat 211.588 kb on - strandat 211.849 kb on - strand, within HMPREF1058_RS02365at 211.915 kb on - strand, within HMPREF1058_RS02365at 211.935 kb on + strand, within HMPREF1058_RS02365at 212.049 kb on + strand, within HMPREF1058_RS02365at 212.049 kb on + strand, within HMPREF1058_RS02365at 212.056 kb on + strand, within HMPREF1058_RS02365at 212.060 kb on + strand, within HMPREF1058_RS02365at 212.116 kb on + strand, within HMPREF1058_RS02365at 212.153 kb on + strand, within HMPREF1058_RS02365at 212.154 kb on - strand, within HMPREF1058_RS02365at 212.167 kb on + strand, within HMPREF1058_RS02365at 212.167 kb on + strand, within HMPREF1058_RS02365at 212.167 kb on + strand, within HMPREF1058_RS02365at 212.168 kb on - strand, within HMPREF1058_RS02365at 212.168 kb on - strand, within HMPREF1058_RS02365at 212.173 kb on + strand, within HMPREF1058_RS02365at 212.173 kb on + strand, within HMPREF1058_RS02365at 212.204 kb on - strandat 212.340 kb on + strand, within HMPREF1058_RS02365at 212.488 kb on + strand, within HMPREF1058_RS02365at 212.489 kb on - strand, within HMPREF1058_RS02365at 212.490 kb on + strand, within HMPREF1058_RS02365at 212.504 kb on + strand, within HMPREF1058_RS02365at 212.505 kb on - strand, within HMPREF1058_RS02365at 212.505 kb on - strand, within HMPREF1058_RS02365at 212.546 kb on + strand, within HMPREF1058_RS02365at 212.566 kb on - strand, within HMPREF1058_RS02365at 212.577 kb on - strand, within HMPREF1058_RS02365at 212.600 kb on - strand, within HMPREF1058_RS02365at 212.616 kb on - strand, within HMPREF1058_RS02365at 212.664 kb on + strand, within HMPREF1058_RS02365at 212.675 kb on + strand, within HMPREF1058_RS02365at 212.675 kb on + strand, within HMPREF1058_RS02365at 212.676 kb on - strand, within HMPREF1058_RS02365at 212.717 kb on + strand, within HMPREF1058_RS02365at 212.717 kb on + strand, within HMPREF1058_RS02365at 212.717 kb on + strand, within HMPREF1058_RS02365at 212.724 kb on + strand, within HMPREF1058_RS02365at 212.728 kb on + strand, within HMPREF1058_RS02365at 212.729 kb on - strand, within HMPREF1058_RS02365at 212.733 kb on + strand, within HMPREF1058_RS02365at 212.734 kb on - strand, within HMPREF1058_RS02365at 212.734 kb on - strand, within HMPREF1058_RS02365at 212.737 kb on + strand, within HMPREF1058_RS02365at 212.737 kb on + strand, within HMPREF1058_RS02365at 212.738 kb on - strand, within HMPREF1058_RS02365at 212.738 kb on - strand, within HMPREF1058_RS02365at 212.738 kb on - strand, within HMPREF1058_RS02365at 212.738 kb on - strand, within HMPREF1058_RS02365at 212.779 kb on + strand, within HMPREF1058_RS02365at 212.781 kb on + strand, within HMPREF1058_RS02365at 212.781 kb on + strand, within HMPREF1058_RS02365at 212.847 kb on + strand, within HMPREF1058_RS02365at 212.883 kb on + strand, within HMPREF1058_RS02365at 212.883 kb on + strand, within HMPREF1058_RS02365at 212.919 kb on + strand, within HMPREF1058_RS02365at 212.946 kb on - strand, within HMPREF1058_RS02365at 212.993 kb on + strand, within HMPREF1058_RS02365at 213.004 kb on + strand, within HMPREF1058_RS02365at 213.005 kb on - strand, within HMPREF1058_RS02365at 213.098 kb on - strand, within HMPREF1058_RS02365at 213.109 kb on - strand, within HMPREF1058_RS02365at 213.184 kb on - strand, within HMPREF1058_RS02365at 213.238 kb on + strand, within HMPREF1058_RS02365at 213.369 kb on + strand, within HMPREF1058_RS02365at 213.372 kb on - strand, within HMPREF1058_RS02365at 213.418 kb on - strand, within HMPREF1058_RS02365at 213.512 kb on + strand, within HMPREF1058_RS02365at 213.750 kb on + strand, within HMPREF1058_RS02365at 213.805 kb on + strand, within HMPREF1058_RS02365at 213.806 kb on - strand, within HMPREF1058_RS02365at 213.807 kb on + strand, within HMPREF1058_RS02365at 213.831 kb on - strand, within HMPREF1058_RS02365at 213.842 kb on + strand, within HMPREF1058_RS02365at 213.880 kb on - strand, within HMPREF1058_RS02365at 213.979 kb on + strand, within HMPREF1058_RS02365at 213.997 kb on + strand, within HMPREF1058_RS02365at 214.095 kb on + strand, within HMPREF1058_RS02365at 214.126 kb on - strand, within HMPREF1058_RS02365at 214.128 kb on + strand, within HMPREF1058_RS02365at 214.129 kb on - strand, within HMPREF1058_RS02365at 214.132 kb on - strand, within HMPREF1058_RS02365at 214.189 kb on + strand, within HMPREF1058_RS02365at 214.191 kb on + strand, within HMPREF1058_RS02365at 214.191 kb on + strand, within HMPREF1058_RS02365at 214.193 kb on + strand, within HMPREF1058_RS02365at 214.213 kb on + strand, within HMPREF1058_RS02365at 214.214 kb on - strand, within HMPREF1058_RS02365at 214.217 kb on + strand, within HMPREF1058_RS02365at 214.218 kb on - strand, within HMPREF1058_RS02365at 214.225 kb on + strand, within HMPREF1058_RS02365at 214.225 kb on + strand, within HMPREF1058_RS02365at 214.226 kb on - strand, within HMPREF1058_RS02365at 214.250 kb on - strand, within HMPREF1058_RS02365at 214.284 kb on + strand, within HMPREF1058_RS02365at 214.355 kb on - strandat 214.394 kb on + strandat 214.551 kb on + strandat 214.552 kb on - strandat 214.612 kb on + strandat 214.624 kb on - strandat 214.632 kb on + strandat 214.632 kb on + strandat 214.632 kb on + strandat 214.633 kb on - strandat 214.633 kb on - strandat 214.633 kb on - strandat 214.633 kb on - strandat 214.672 kb on + strandat 214.700 kb on + strandat 214.801 kb on + strandat 214.861 kb on + strandat 215.009 kb on + strand, within HMPREF1058_RS02360at 215.009 kb on + strand, within HMPREF1058_RS02360at 215.187 kb on + strand, within HMPREF1058_RS02360at 215.233 kb on + strand, within HMPREF1058_RS02360at 215.353 kb on - strand, within HMPREF1058_RS02360at 215.373 kb on - strand, within HMPREF1058_RS02360at 215.373 kb on - strand, within HMPREF1058_RS02360at 215.382 kb on + strand, within HMPREF1058_RS02360at 215.505 kb on - strand, within HMPREF1058_RS02360at 215.508 kb on - strand, within HMPREF1058_RS02360at 215.508 kb on - strand, within HMPREF1058_RS02360at 215.508 kb on - strand, within HMPREF1058_RS02360at 215.555 kb on - strand, within HMPREF1058_RS02360at 215.568 kb on - strand, within HMPREF1058_RS02360at 215.568 kb on - strand, within HMPREF1058_RS02360at 215.585 kb on + strand, within HMPREF1058_RS02360at 215.586 kb on - strand, within HMPREF1058_RS02360at 215.586 kb on - strand, within HMPREF1058_RS02360at 215.592 kb on + strand, within HMPREF1058_RS02360

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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210,441 + HMPREF1058_RS02370 0.56 +0.3
210,443 + HMPREF1058_RS02370 0.56 +1.5
210,444 - HMPREF1058_RS02370 0.57 -0.3
210,456 - HMPREF1058_RS02370 0.57 -0.4
210,622 - HMPREF1058_RS02370 0.65 +1.4
210,638 + HMPREF1058_RS02370 0.66 +0.1
210,639 - HMPREF1058_RS02370 0.66 -0.4
210,771 + HMPREF1058_RS02370 0.72 +1.9
210,772 - HMPREF1058_RS02370 0.72 -0.3
210,807 - HMPREF1058_RS02370 0.74 +0.4
210,867 + HMPREF1058_RS02370 0.77 +0.5
210,872 - HMPREF1058_RS02370 0.77 -0.4
210,886 - HMPREF1058_RS02370 0.78 -0.2
210,983 + HMPREF1058_RS02370 0.83 +1.7
211,065 - HMPREF1058_RS02370 0.87 -0.0
211,075 + HMPREF1058_RS02370 0.87 +2.1
211,075 + HMPREF1058_RS02370 0.87 +1.2
211,076 - HMPREF1058_RS02370 0.87 +1.0
211,098 - HMPREF1058_RS02370 0.88 +0.1
211,138 + +0.8
211,395 - -2.0
211,398 + +1.0
211,399 - -0.3
211,399 - -0.2
211,416 + +0.1
211,417 - +0.5
211,417 - -0.4
211,419 - -0.2
211,523 + +1.0
211,523 + -0.9
211,523 + -1.1
211,523 + -0.7
211,588 - -0.7
211,849 - HMPREF1058_RS02365 0.14 -0.0
211,915 - HMPREF1058_RS02365 0.16 -0.5
211,935 + HMPREF1058_RS02365 0.17 -0.4
212,049 + HMPREF1058_RS02365 0.20 -0.4
212,049 + HMPREF1058_RS02365 0.20 +0.8
212,056 + HMPREF1058_RS02365 0.20 -0.8
212,060 + HMPREF1058_RS02365 0.20 +0.4
212,116 + HMPREF1058_RS02365 0.22 +1.1
212,153 + HMPREF1058_RS02365 0.23 +1.3
212,154 - HMPREF1058_RS02365 0.23 -1.4
212,167 + HMPREF1058_RS02365 0.24 -0.4
212,167 + HMPREF1058_RS02365 0.24 +0.2
212,167 + HMPREF1058_RS02365 0.24 -0.5
212,168 - HMPREF1058_RS02365 0.24 -0.7
212,168 - HMPREF1058_RS02365 0.24 -0.5
212,173 + HMPREF1058_RS02365 0.24 +0.9
212,173 + HMPREF1058_RS02365 0.24 +1.3
212,204 - -0.0
212,340 + HMPREF1058_RS02365 0.29 +1.0
212,488 + HMPREF1058_RS02365 0.34 -1.2
212,489 - HMPREF1058_RS02365 0.34 -1.4
212,490 + HMPREF1058_RS02365 0.34 -1.8
212,504 + HMPREF1058_RS02365 0.34 +0.7
212,505 - HMPREF1058_RS02365 0.34 +0.6
212,505 - HMPREF1058_RS02365 0.34 -0.0
212,546 + HMPREF1058_RS02365 0.35 -0.0
212,566 - HMPREF1058_RS02365 0.36 +0.4
212,577 - HMPREF1058_RS02365 0.36 +0.7
212,600 - HMPREF1058_RS02365 0.37 +0.8
212,616 - HMPREF1058_RS02365 0.38 -1.4
212,664 + HMPREF1058_RS02365 0.39 +0.5
212,675 + HMPREF1058_RS02365 0.39 +0.1
212,675 + HMPREF1058_RS02365 0.39 +0.1
212,676 - HMPREF1058_RS02365 0.40 -1.0
212,717 + HMPREF1058_RS02365 0.41 +1.9
212,717 + HMPREF1058_RS02365 0.41 -0.7
212,717 + HMPREF1058_RS02365 0.41 -1.5
212,724 + HMPREF1058_RS02365 0.41 -2.4
212,728 + HMPREF1058_RS02365 0.41 +2.3
212,729 - HMPREF1058_RS02365 0.41 -0.1
212,733 + HMPREF1058_RS02365 0.41 +0.5
212,734 - HMPREF1058_RS02365 0.41 +1.4
212,734 - HMPREF1058_RS02365 0.41 -0.0
212,737 + HMPREF1058_RS02365 0.41 -0.2
212,737 + HMPREF1058_RS02365 0.41 +0.2
212,738 - HMPREF1058_RS02365 0.41 +0.2
212,738 - HMPREF1058_RS02365 0.41 -0.3
212,738 - HMPREF1058_RS02365 0.41 -0.4
212,738 - HMPREF1058_RS02365 0.41 -0.0
212,779 + HMPREF1058_RS02365 0.43 -0.8
212,781 + HMPREF1058_RS02365 0.43 +0.9
212,781 + HMPREF1058_RS02365 0.43 -0.5
212,847 + HMPREF1058_RS02365 0.45 -0.4
212,883 + HMPREF1058_RS02365 0.46 +0.1
212,883 + HMPREF1058_RS02365 0.46 -0.3
212,919 + HMPREF1058_RS02365 0.47 -1.0
212,946 - HMPREF1058_RS02365 0.48 -0.1
212,993 + HMPREF1058_RS02365 0.49 +2.0
213,004 + HMPREF1058_RS02365 0.50 +3.1
213,005 - HMPREF1058_RS02365 0.50 -0.0
213,098 - HMPREF1058_RS02365 0.53 +0.8
213,109 - HMPREF1058_RS02365 0.53 +0.4
213,184 - HMPREF1058_RS02365 0.55 -0.4
213,238 + HMPREF1058_RS02365 0.57 -0.2
213,369 + HMPREF1058_RS02365 0.61 -0.7
213,372 - HMPREF1058_RS02365 0.61 +0.2
213,418 - HMPREF1058_RS02365 0.62 -0.4
213,512 + HMPREF1058_RS02365 0.65 -0.7
213,750 + HMPREF1058_RS02365 0.73 -0.9
213,805 + HMPREF1058_RS02365 0.74 +0.6
213,806 - HMPREF1058_RS02365 0.74 -0.5
213,807 + HMPREF1058_RS02365 0.75 +0.5
213,831 - HMPREF1058_RS02365 0.75 -1.9
213,842 + HMPREF1058_RS02365 0.76 -2.0
213,880 - HMPREF1058_RS02365 0.77 +1.2
213,979 + HMPREF1058_RS02365 0.80 -1.4
213,997 + HMPREF1058_RS02365 0.80 -0.9
214,095 + HMPREF1058_RS02365 0.83 -0.8
214,126 - HMPREF1058_RS02365 0.84 -1.9
214,128 + HMPREF1058_RS02365 0.84 -1.3
214,129 - HMPREF1058_RS02365 0.84 -1.3
214,132 - HMPREF1058_RS02365 0.85 -0.3
214,189 + HMPREF1058_RS02365 0.86 -2.0
214,191 + HMPREF1058_RS02365 0.86 +0.3
214,191 + HMPREF1058_RS02365 0.86 +0.4
214,193 + HMPREF1058_RS02365 0.86 -0.0
214,213 + HMPREF1058_RS02365 0.87 +3.9
214,214 - HMPREF1058_RS02365 0.87 +0.4
214,217 + HMPREF1058_RS02365 0.87 +1.0
214,218 - HMPREF1058_RS02365 0.87 -0.8
214,225 + HMPREF1058_RS02365 0.87 -0.0
214,225 + HMPREF1058_RS02365 0.87 -0.6
214,226 - HMPREF1058_RS02365 0.87 -2.1
214,250 - HMPREF1058_RS02365 0.88 +2.0
214,284 + HMPREF1058_RS02365 0.89 -0.1
214,355 - +0.2
214,394 + -0.7
214,551 + -0.0
214,552 - -0.0
214,612 + -0.8
214,624 - -0.1
214,632 + +0.4
214,632 + -1.1
214,632 + -0.6
214,633 - +0.5
214,633 - -0.5
214,633 - +0.8
214,633 - +1.3
214,672 + -0.9
214,700 + +0.5
214,801 + -0.0
214,861 + -1.1
215,009 + HMPREF1058_RS02360 0.11 -0.0
215,009 + HMPREF1058_RS02360 0.11 +1.0
215,187 + HMPREF1058_RS02360 0.20 -1.1
215,233 + HMPREF1058_RS02360 0.23 +0.1
215,353 - HMPREF1058_RS02360 0.30 +2.1
215,373 - HMPREF1058_RS02360 0.31 -0.5
215,373 - HMPREF1058_RS02360 0.31 +0.7
215,382 + HMPREF1058_RS02360 0.31 +0.3
215,505 - HMPREF1058_RS02360 0.38 -0.4
215,508 - HMPREF1058_RS02360 0.38 -1.0
215,508 - HMPREF1058_RS02360 0.38 -0.2
215,508 - HMPREF1058_RS02360 0.38 -0.6
215,555 - HMPREF1058_RS02360 0.41 +1.0
215,568 - HMPREF1058_RS02360 0.41 +0.0
215,568 - HMPREF1058_RS02360 0.41 -0.1
215,585 + HMPREF1058_RS02360 0.42 -0.6
215,586 - HMPREF1058_RS02360 0.42 -0.4
215,586 - HMPREF1058_RS02360 0.42 +0.1
215,592 + HMPREF1058_RS02360 0.43 +0.6

Or see this region's nucleotide sequence