Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02155

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02160 and HMPREF1058_RS02155 are separated by 27 nucleotidesHMPREF1058_RS02155 and HMPREF1058_RS02150 overlap by 4 nucleotides HMPREF1058_RS02160: HMPREF1058_RS02160 - hypothetical protein, at 268,188 to 269,972 _RS02160 HMPREF1058_RS02155: HMPREF1058_RS02155 - ParB-like nuclease domain-containing protein, at 270,000 to 270,512 _RS02155 HMPREF1058_RS02150: HMPREF1058_RS02150 - DUF3440 domain-containing protein, at 270,509 to 271,810 _RS02150 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 269.030 kb on - strand, within HMPREF1058_RS02160at 269.049 kb on + strand, within HMPREF1058_RS02160at 269.049 kb on + strand, within HMPREF1058_RS02160at 269.059 kb on - strand, within HMPREF1058_RS02160at 269.059 kb on - strand, within HMPREF1058_RS02160at 269.105 kb on - strand, within HMPREF1058_RS02160at 269.107 kb on + strand, within HMPREF1058_RS02160at 269.108 kb on - strand, within HMPREF1058_RS02160at 269.162 kb on - strand, within HMPREF1058_RS02160at 269.175 kb on - strand, within HMPREF1058_RS02160at 269.180 kb on + strand, within HMPREF1058_RS02160at 269.186 kb on + strand, within HMPREF1058_RS02160at 269.257 kb on + strand, within HMPREF1058_RS02160at 269.258 kb on - strand, within HMPREF1058_RS02160at 269.306 kb on + strand, within HMPREF1058_RS02160at 269.331 kb on - strand, within HMPREF1058_RS02160at 269.335 kb on - strand, within HMPREF1058_RS02160at 269.377 kb on + strand, within HMPREF1058_RS02160at 269.414 kb on + strand, within HMPREF1058_RS02160at 269.414 kb on + strand, within HMPREF1058_RS02160at 269.414 kb on + strand, within HMPREF1058_RS02160at 269.414 kb on + strand, within HMPREF1058_RS02160at 269.414 kb on + strandat 269.414 kb on + strand, within HMPREF1058_RS02160at 269.439 kb on + strand, within HMPREF1058_RS02160at 269.440 kb on - strand, within HMPREF1058_RS02160at 269.440 kb on - strand, within HMPREF1058_RS02160at 269.484 kb on + strand, within HMPREF1058_RS02160at 269.607 kb on + strand, within HMPREF1058_RS02160at 269.607 kb on + strand, within HMPREF1058_RS02160at 269.607 kb on + strand, within HMPREF1058_RS02160at 269.607 kb on + strand, within HMPREF1058_RS02160at 269.608 kb on - strand, within HMPREF1058_RS02160at 269.608 kb on - strand, within HMPREF1058_RS02160at 269.630 kb on + strand, within HMPREF1058_RS02160at 269.650 kb on + strand, within HMPREF1058_RS02160at 269.676 kb on + strand, within HMPREF1058_RS02160at 269.750 kb on + strand, within HMPREF1058_RS02160at 269.751 kb on - strand, within HMPREF1058_RS02160at 269.752 kb on + strand, within HMPREF1058_RS02160at 269.753 kb on - strand, within HMPREF1058_RS02160at 269.753 kb on - strand, within HMPREF1058_RS02160at 269.861 kb on - strandat 269.861 kb on - strandat 269.865 kb on - strandat 269.865 kb on - strandat 269.865 kb on - strandat 269.901 kb on - strandat 269.950 kb on - strandat 269.950 kb on - strandat 269.953 kb on - strandat 269.956 kb on - strandat 269.966 kb on - strandat 269.984 kb on - strandat 269.984 kb on - strandat 270.070 kb on - strand, within HMPREF1058_RS02155at 270.095 kb on + strand, within HMPREF1058_RS02155at 270.153 kb on + strand, within HMPREF1058_RS02155at 270.153 kb on + strand, within HMPREF1058_RS02155at 270.253 kb on - strand, within HMPREF1058_RS02155at 270.328 kb on + strand, within HMPREF1058_RS02155at 270.328 kb on + strand, within HMPREF1058_RS02155at 270.328 kb on + strand, within HMPREF1058_RS02155at 270.329 kb on - strand, within HMPREF1058_RS02155at 270.330 kb on + strand, within HMPREF1058_RS02155at 270.330 kb on + strand, within HMPREF1058_RS02155at 270.331 kb on - strand, within HMPREF1058_RS02155at 270.347 kb on + strand, within HMPREF1058_RS02155at 270.352 kb on + strand, within HMPREF1058_RS02155at 270.357 kb on + strand, within HMPREF1058_RS02155at 270.369 kb on - strand, within HMPREF1058_RS02155at 270.371 kb on + strand, within HMPREF1058_RS02155at 270.372 kb on - strand, within HMPREF1058_RS02155at 270.372 kb on - strand, within HMPREF1058_RS02155at 270.437 kb on + strand, within HMPREF1058_RS02155at 270.438 kb on - strand, within HMPREF1058_RS02155at 270.484 kb on + strandat 270.485 kb on - strandat 270.529 kb on - strandat 270.593 kb on - strandat 270.596 kb on + strandat 270.597 kb on - strandat 270.597 kb on - strandat 270.628 kb on + strandat 270.628 kb on + strandat 270.634 kb on + strandat 270.636 kb on + strandat 270.668 kb on + strand, within HMPREF1058_RS02150at 270.668 kb on + strand, within HMPREF1058_RS02150at 270.677 kb on + strand, within HMPREF1058_RS02150at 270.731 kb on + strand, within HMPREF1058_RS02150at 270.767 kb on + strand, within HMPREF1058_RS02150at 270.767 kb on + strand, within HMPREF1058_RS02150at 270.869 kb on + strand, within HMPREF1058_RS02150at 270.880 kb on - strand, within HMPREF1058_RS02150at 270.883 kb on + strand, within HMPREF1058_RS02150at 270.883 kb on + strand, within HMPREF1058_RS02150at 270.883 kb on + strand, within HMPREF1058_RS02150at 270.884 kb on - strand, within HMPREF1058_RS02150at 270.885 kb on + strand, within HMPREF1058_RS02150at 270.900 kb on + strand, within HMPREF1058_RS02150at 270.901 kb on - strand, within HMPREF1058_RS02150at 270.986 kb on + strand, within HMPREF1058_RS02150at 271.006 kb on + strand, within HMPREF1058_RS02150at 271.023 kb on + strand, within HMPREF1058_RS02150at 271.025 kb on + strand, within HMPREF1058_RS02150at 271.104 kb on + strand, within HMPREF1058_RS02150at 271.146 kb on + strand, within HMPREF1058_RS02150at 271.147 kb on - strand, within HMPREF1058_RS02150at 271.157 kb on + strand, within HMPREF1058_RS02150at 271.158 kb on - strand, within HMPREF1058_RS02150at 271.159 kb on + strand, within HMPREF1058_RS02150at 271.159 kb on + strand, within HMPREF1058_RS02150at 271.180 kb on - strand, within HMPREF1058_RS02150at 271.184 kb on - strand, within HMPREF1058_RS02150at 271.268 kb on - strand, within HMPREF1058_RS02150at 271.268 kb on - strand, within HMPREF1058_RS02150at 271.399 kb on - strand, within HMPREF1058_RS02150at 271.463 kb on - strand, within HMPREF1058_RS02150at 271.486 kb on - strand, within HMPREF1058_RS02150at 271.498 kb on + strand, within HMPREF1058_RS02150

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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269,030 - HMPREF1058_RS02160 0.47 +0.5
269,049 + HMPREF1058_RS02160 0.48 +0.4
269,049 + HMPREF1058_RS02160 0.48 -0.5
269,059 - HMPREF1058_RS02160 0.49 -0.2
269,059 - HMPREF1058_RS02160 0.49 -0.2
269,105 - HMPREF1058_RS02160 0.51 +0.8
269,107 + HMPREF1058_RS02160 0.51 -0.4
269,108 - HMPREF1058_RS02160 0.52 +0.9
269,162 - HMPREF1058_RS02160 0.55 -0.8
269,175 - HMPREF1058_RS02160 0.55 +0.1
269,180 + HMPREF1058_RS02160 0.56 -1.4
269,186 + HMPREF1058_RS02160 0.56 -1.6
269,257 + HMPREF1058_RS02160 0.60 +1.3
269,258 - HMPREF1058_RS02160 0.60 -1.1
269,306 + HMPREF1058_RS02160 0.63 +1.5
269,331 - HMPREF1058_RS02160 0.64 -0.5
269,335 - HMPREF1058_RS02160 0.64 -0.4
269,377 + HMPREF1058_RS02160 0.67 +0.8
269,414 + HMPREF1058_RS02160 0.69 +0.0
269,414 + HMPREF1058_RS02160 0.69 +0.2
269,414 + HMPREF1058_RS02160 0.69 -0.7
269,414 + HMPREF1058_RS02160 0.69 -0.9
269,414 + -1.3
269,414 + HMPREF1058_RS02160 0.69 +1.5
269,439 + HMPREF1058_RS02160 0.70 -1.2
269,440 - HMPREF1058_RS02160 0.70 -1.0
269,440 - HMPREF1058_RS02160 0.70 -1.6
269,484 + HMPREF1058_RS02160 0.73 -2.0
269,607 + HMPREF1058_RS02160 0.79 +0.8
269,607 + HMPREF1058_RS02160 0.79 +0.3
269,607 + HMPREF1058_RS02160 0.79 -0.2
269,607 + HMPREF1058_RS02160 0.79 -2.6
269,608 - HMPREF1058_RS02160 0.80 +1.4
269,608 - HMPREF1058_RS02160 0.80 -0.3
269,630 + HMPREF1058_RS02160 0.81 -0.1
269,650 + HMPREF1058_RS02160 0.82 +0.0
269,676 + HMPREF1058_RS02160 0.83 -0.2
269,750 + HMPREF1058_RS02160 0.88 -0.2
269,751 - HMPREF1058_RS02160 0.88 +0.3
269,752 + HMPREF1058_RS02160 0.88 -0.3
269,753 - HMPREF1058_RS02160 0.88 -1.0
269,753 - HMPREF1058_RS02160 0.88 +0.2
269,861 - +0.3
269,861 - +0.8
269,865 - -2.5
269,865 - -1.5
269,865 - -0.3
269,901 - +0.9
269,950 - +0.1
269,950 - -1.2
269,953 - -0.4
269,956 - -0.2
269,966 - -0.6
269,984 - -0.3
269,984 - +0.1
270,070 - HMPREF1058_RS02155 0.14 +1.3
270,095 + HMPREF1058_RS02155 0.19 +1.7
270,153 + HMPREF1058_RS02155 0.30 -0.4
270,153 + HMPREF1058_RS02155 0.30 +1.2
270,253 - HMPREF1058_RS02155 0.49 +1.5
270,328 + HMPREF1058_RS02155 0.64 +1.7
270,328 + HMPREF1058_RS02155 0.64 +0.8
270,328 + HMPREF1058_RS02155 0.64 +1.4
270,329 - HMPREF1058_RS02155 0.64 +1.4
270,330 + HMPREF1058_RS02155 0.64 +1.1
270,330 + HMPREF1058_RS02155 0.64 +1.3
270,331 - HMPREF1058_RS02155 0.65 +1.0
270,347 + HMPREF1058_RS02155 0.68 +1.9
270,352 + HMPREF1058_RS02155 0.69 +1.6
270,357 + HMPREF1058_RS02155 0.70 +2.3
270,369 - HMPREF1058_RS02155 0.72 +0.1
270,371 + HMPREF1058_RS02155 0.72 +2.4
270,372 - HMPREF1058_RS02155 0.73 +1.8
270,372 - HMPREF1058_RS02155 0.73 +2.9
270,437 + HMPREF1058_RS02155 0.85 +1.5
270,438 - HMPREF1058_RS02155 0.85 -0.0
270,484 + +1.3
270,485 - +0.2
270,529 - +1.2
270,593 - +0.0
270,596 + +1.5
270,597 - +1.0
270,597 - -0.0
270,628 + +1.2
270,628 + -1.3
270,634 + -2.0
270,636 + +1.5
270,668 + HMPREF1058_RS02150 0.12 +1.3
270,668 + HMPREF1058_RS02150 0.12 +0.4
270,677 + HMPREF1058_RS02150 0.13 +1.7
270,731 + HMPREF1058_RS02150 0.17 +1.5
270,767 + HMPREF1058_RS02150 0.20 +1.3
270,767 + HMPREF1058_RS02150 0.20 +0.5
270,869 + HMPREF1058_RS02150 0.28 -2.3
270,880 - HMPREF1058_RS02150 0.28 +0.6
270,883 + HMPREF1058_RS02150 0.29 +0.8
270,883 + HMPREF1058_RS02150 0.29 -0.7
270,883 + HMPREF1058_RS02150 0.29 +0.1
270,884 - HMPREF1058_RS02150 0.29 +2.2
270,885 + HMPREF1058_RS02150 0.29 +1.7
270,900 + HMPREF1058_RS02150 0.30 +1.2
270,901 - HMPREF1058_RS02150 0.30 +0.8
270,986 + HMPREF1058_RS02150 0.37 +0.5
271,006 + HMPREF1058_RS02150 0.38 +1.0
271,023 + HMPREF1058_RS02150 0.39 +1.1
271,025 + HMPREF1058_RS02150 0.40 +2.3
271,104 + HMPREF1058_RS02150 0.46 -0.2
271,146 + HMPREF1058_RS02150 0.49 +0.8
271,147 - HMPREF1058_RS02150 0.49 +1.2
271,157 + HMPREF1058_RS02150 0.50 +0.1
271,158 - HMPREF1058_RS02150 0.50 +1.2
271,159 + HMPREF1058_RS02150 0.50 +2.0
271,159 + HMPREF1058_RS02150 0.50 -1.1
271,180 - HMPREF1058_RS02150 0.52 +1.4
271,184 - HMPREF1058_RS02150 0.52 +0.7
271,268 - HMPREF1058_RS02150 0.58 +0.1
271,268 - HMPREF1058_RS02150 0.58 +1.2
271,399 - HMPREF1058_RS02150 0.68 +1.9
271,463 - HMPREF1058_RS02150 0.73 +0.5
271,486 - HMPREF1058_RS02150 0.75 +0.9
271,498 + HMPREF1058_RS02150 0.76 +1.3

Or see this region's nucleotide sequence