Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02130

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02135 and HMPREF1058_RS02130 are separated by 109 nucleotidesHMPREF1058_RS02130 and HMPREF1058_RS0120030 are separated by 246 nucleotides HMPREF1058_RS02135: HMPREF1058_RS02135 - phosphoenolpyruvate synthase, at 273,929 to 276,886 _RS02135 HMPREF1058_RS02130: HMPREF1058_RS02130 - hypothetical protein, at 276,996 to 278,138 _RS02130 HMPREF1058_RS0120030: HMPREF1058_RS0120030 - transposase, at 278,385 to 279,689 _RS0120030 Position (kb) 276 277 278 279Strain fitness (log2 ratio) -2 -1 0 1 2at 276.095 kb on + strand, within HMPREF1058_RS02135at 276.096 kb on - strand, within HMPREF1058_RS02135at 276.096 kb on - strand, within HMPREF1058_RS02135at 276.096 kb on - strand, within HMPREF1058_RS02135at 276.109 kb on + strand, within HMPREF1058_RS02135at 276.109 kb on - strand, within HMPREF1058_RS02135at 276.110 kb on - strand, within HMPREF1058_RS02135at 276.183 kb on + strand, within HMPREF1058_RS02135at 276.184 kb on - strand, within HMPREF1058_RS02135at 276.256 kb on - strand, within HMPREF1058_RS02135at 276.302 kb on + strand, within HMPREF1058_RS02135at 276.303 kb on - strand, within HMPREF1058_RS02135at 276.365 kb on - strand, within HMPREF1058_RS02135at 276.388 kb on - strand, within HMPREF1058_RS02135at 276.463 kb on + strand, within HMPREF1058_RS02135at 276.464 kb on - strand, within HMPREF1058_RS02135at 276.476 kb on - strand, within HMPREF1058_RS02135at 276.499 kb on - strand, within HMPREF1058_RS02135at 276.541 kb on + strand, within HMPREF1058_RS02135at 276.541 kb on + strand, within HMPREF1058_RS02135at 276.541 kb on + strand, within HMPREF1058_RS02135at 276.542 kb on - strand, within HMPREF1058_RS02135at 276.543 kb on + strand, within HMPREF1058_RS02135at 276.543 kb on + strand, within HMPREF1058_RS02135at 276.543 kb on + strand, within HMPREF1058_RS02135at 276.544 kb on - strand, within HMPREF1058_RS02135at 276.544 kb on - strand, within HMPREF1058_RS02135at 276.549 kb on + strand, within HMPREF1058_RS02135at 276.650 kb on - strandat 276.654 kb on - strandat 276.734 kb on + strandat 276.736 kb on + strandat 276.749 kb on - strandat 276.749 kb on - strandat 276.752 kb on + strandat 276.885 kb on - strandat 276.936 kb on - strandat 276.949 kb on + strandat 276.954 kb on + strandat 277.015 kb on - strandat 277.017 kb on + strandat 277.076 kb on + strandat 277.077 kb on - strandat 277.110 kb on - strandat 277.138 kb on - strand, within HMPREF1058_RS02130at 277.140 kb on - strandat 277.148 kb on + strand, within HMPREF1058_RS02130at 277.149 kb on - strand, within HMPREF1058_RS02130at 277.157 kb on - strand, within HMPREF1058_RS02130at 277.301 kb on + strand, within HMPREF1058_RS02130at 277.330 kb on + strand, within HMPREF1058_RS02130at 277.475 kb on + strand, within HMPREF1058_RS02130at 277.513 kb on - strand, within HMPREF1058_RS02130at 277.740 kb on + strand, within HMPREF1058_RS02130at 277.764 kb on + strand, within HMPREF1058_RS02130at 277.790 kb on - strand, within HMPREF1058_RS02130at 277.801 kb on + strand, within HMPREF1058_RS02130at 277.852 kb on + strand, within HMPREF1058_RS02130at 277.853 kb on - strand, within HMPREF1058_RS02130at 277.856 kb on - strand, within HMPREF1058_RS02130at 277.860 kb on - strand, within HMPREF1058_RS02130at 277.864 kb on + strandat 277.887 kb on + strand, within HMPREF1058_RS02130at 277.895 kb on - strand, within HMPREF1058_RS02130at 277.912 kb on + strand, within HMPREF1058_RS02130at 277.920 kb on + strand, within HMPREF1058_RS02130at 277.920 kb on + strand, within HMPREF1058_RS02130at 277.934 kb on + strand, within HMPREF1058_RS02130at 277.934 kb on + strand, within HMPREF1058_RS02130at 277.939 kb on + strand, within HMPREF1058_RS02130at 277.939 kb on + strand, within HMPREF1058_RS02130at 277.942 kb on + strand, within HMPREF1058_RS02130at 277.946 kb on + strand, within HMPREF1058_RS02130at 277.946 kb on + strand, within HMPREF1058_RS02130at 277.946 kb on + strand, within HMPREF1058_RS02130at 277.948 kb on + strand, within HMPREF1058_RS02130at 278.048 kb on + strandat 278.049 kb on - strandat 278.065 kb on + strandat 278.122 kb on + strandat 278.209 kb on + strandat 278.209 kb on + strandat 278.216 kb on + strandat 278.233 kb on + strandat 278.233 kb on + strandat 278.254 kb on + strandat 278.260 kb on - strandat 278.271 kb on + strandat 278.272 kb on + strandat 278.283 kb on + strandat 278.311 kb on + strandat 278.311 kb on + strandat 278.312 kb on - strandat 278.383 kb on + strandat 278.397 kb on - strandat 278.397 kb on - strandat 278.444 kb on + strandat 278.449 kb on - strandat 278.449 kb on - strandat 278.449 kb on - strandat 278.469 kb on + strandat 278.470 kb on - strandat 278.496 kb on + strandat 278.497 kb on - strandat 278.582 kb on - strandat 278.582 kb on - strand, within HMPREF1058_RS0120030at 278.628 kb on + strand, within HMPREF1058_RS0120030at 278.631 kb on - strand, within HMPREF1058_RS0120030at 278.706 kb on - strand, within HMPREF1058_RS0120030at 278.707 kb on + strand, within HMPREF1058_RS0120030at 278.708 kb on - strand, within HMPREF1058_RS0120030at 278.765 kb on + strand, within HMPREF1058_RS0120030at 278.831 kb on - strand, within HMPREF1058_RS0120030at 278.832 kb on + strand, within HMPREF1058_RS0120030at 278.833 kb on - strand, within HMPREF1058_RS0120030at 278.945 kb on - strand, within HMPREF1058_RS0120030at 278.991 kb on - strand, within HMPREF1058_RS0120030

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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276,095 + HMPREF1058_RS02135 0.73 +0.5
276,096 - HMPREF1058_RS02135 0.73 -0.5
276,096 - HMPREF1058_RS02135 0.73 +1.0
276,096 - HMPREF1058_RS02135 0.73 +0.6
276,109 + HMPREF1058_RS02135 0.74 +2.5
276,109 - HMPREF1058_RS02135 0.74 -0.1
276,110 - HMPREF1058_RS02135 0.74 +1.5
276,183 + HMPREF1058_RS02135 0.76 +0.0
276,184 - HMPREF1058_RS02135 0.76 -0.2
276,256 - HMPREF1058_RS02135 0.79 -0.7
276,302 + HMPREF1058_RS02135 0.80 +1.1
276,303 - HMPREF1058_RS02135 0.80 -0.8
276,365 - HMPREF1058_RS02135 0.82 -0.4
276,388 - HMPREF1058_RS02135 0.83 -2.2
276,463 + HMPREF1058_RS02135 0.86 +0.7
276,464 - HMPREF1058_RS02135 0.86 -0.9
276,476 - HMPREF1058_RS02135 0.86 -2.4
276,499 - HMPREF1058_RS02135 0.87 -1.0
276,541 + HMPREF1058_RS02135 0.88 +1.0
276,541 + HMPREF1058_RS02135 0.88 -0.5
276,541 + HMPREF1058_RS02135 0.88 +0.2
276,542 - HMPREF1058_RS02135 0.88 -1.7
276,543 + HMPREF1058_RS02135 0.88 -1.9
276,543 + HMPREF1058_RS02135 0.88 -0.5
276,543 + HMPREF1058_RS02135 0.88 -0.7
276,544 - HMPREF1058_RS02135 0.88 -0.3
276,544 - HMPREF1058_RS02135 0.88 -0.5
276,549 + HMPREF1058_RS02135 0.89 -0.5
276,650 - +0.6
276,654 - +0.5
276,734 + -0.8
276,736 + -0.0
276,749 - +0.3
276,749 - -1.0
276,752 + -2.0
276,885 - +0.7
276,936 - +1.1
276,949 + -1.7
276,954 + -0.5
277,015 - +0.2
277,017 + +0.5
277,076 + +0.5
277,077 - +1.2
277,110 - -0.4
277,138 - HMPREF1058_RS02130 0.12 +0.7
277,140 - +0.3
277,148 + HMPREF1058_RS02130 0.13 +0.7
277,149 - HMPREF1058_RS02130 0.13 +0.5
277,157 - HMPREF1058_RS02130 0.14 -0.0
277,301 + HMPREF1058_RS02130 0.27 +0.2
277,330 + HMPREF1058_RS02130 0.29 +0.5
277,475 + HMPREF1058_RS02130 0.42 +0.6
277,513 - HMPREF1058_RS02130 0.45 +0.7
277,740 + HMPREF1058_RS02130 0.65 +0.3
277,764 + HMPREF1058_RS02130 0.67 +0.2
277,790 - HMPREF1058_RS02130 0.69 +1.4
277,801 + HMPREF1058_RS02130 0.70 -0.1
277,852 + HMPREF1058_RS02130 0.75 -0.9
277,853 - HMPREF1058_RS02130 0.75 +0.4
277,856 - HMPREF1058_RS02130 0.75 +0.7
277,860 - HMPREF1058_RS02130 0.76 +1.5
277,864 + -1.3
277,887 + HMPREF1058_RS02130 0.78 +0.5
277,895 - HMPREF1058_RS02130 0.79 +0.2
277,912 + HMPREF1058_RS02130 0.80 -0.1
277,920 + HMPREF1058_RS02130 0.81 +1.2
277,920 + HMPREF1058_RS02130 0.81 +1.4
277,934 + HMPREF1058_RS02130 0.82 +1.0
277,934 + HMPREF1058_RS02130 0.82 +0.0
277,939 + HMPREF1058_RS02130 0.83 +0.1
277,939 + HMPREF1058_RS02130 0.83 +1.3
277,942 + HMPREF1058_RS02130 0.83 +0.6
277,946 + HMPREF1058_RS02130 0.83 +1.2
277,946 + HMPREF1058_RS02130 0.83 +0.3
277,946 + HMPREF1058_RS02130 0.83 +0.1
277,948 + HMPREF1058_RS02130 0.83 +0.8
278,048 + +0.4
278,049 - +1.2
278,065 + +0.8
278,122 + +0.7
278,209 + -0.6
278,209 + +0.4
278,216 + -0.3
278,233 + +0.9
278,233 + -1.3
278,254 + +1.1
278,260 - -0.6
278,271 + +0.6
278,272 + +0.3
278,283 + +2.0
278,311 + +0.2
278,311 + -0.4
278,312 - +0.3
278,383 + -0.7
278,397 - -1.4
278,397 - -0.3
278,444 + -0.3
278,449 - +0.7
278,449 - -0.4
278,449 - +0.9
278,469 + +0.7
278,470 - -0.8
278,496 + +1.3
278,497 - +1.3
278,582 - -0.3
278,582 - HMPREF1058_RS0120030 0.15 -2.6
278,628 + HMPREF1058_RS0120030 0.19 +0.4
278,631 - HMPREF1058_RS0120030 0.19 +0.9
278,706 - HMPREF1058_RS0120030 0.25 -0.6
278,707 + HMPREF1058_RS0120030 0.25 +0.2
278,708 - HMPREF1058_RS0120030 0.25 +0.2
278,765 + HMPREF1058_RS0120030 0.29 -0.0
278,831 - HMPREF1058_RS0120030 0.34 -0.7
278,832 + HMPREF1058_RS0120030 0.34 +0.2
278,833 - HMPREF1058_RS0120030 0.34 -0.5
278,945 - HMPREF1058_RS0120030 0.43 +0.4
278,991 - HMPREF1058_RS0120030 0.46 +1.3

Or see this region's nucleotide sequence