Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17550 and HMPREF1058_RS21410 overlap by 8 nucleotides HMPREF1058_RS21410 and HMPREF1058_RS0119340 are separated by 12 nucleotides HMPREF1058_RS0119340 and HMPREF1058_RS17545 are separated by 120 nucleotides HMPREF1058_RS17545 and HMPREF1058_RS0119345 are separated by 6 nucleotides
HMPREF1058_RS17550: HMPREF1058_RS17550 - caspase family protein, at 398,727 to 400,283
_RS17550
HMPREF1058_RS21410: HMPREF1058_RS21410 - hypothetical protein, at 400,276 to 400,413
_RS21410
HMPREF1058_RS0119340: HMPREF1058_RS0119340 - IS1182 family transposase, at 400,426 to 402,080
_RS0119340
HMPREF1058_RS17545: HMPREF1058_RS17545 - hypothetical protein, at 402,201 to 402,674
_RS17545
HMPREF1058_RS0119345: HMPREF1058_RS0119345 - 6-bladed beta-propeller, at 402,681 to 403,445
_RS0119345
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.600 kb on + strand, within HMPREF1058_RS17550 at 399.601 kb on - strand, within HMPREF1058_RS17550 at 399.612 kb on + strand, within HMPREF1058_RS17550 at 399.613 kb on - strand, within HMPREF1058_RS17550 at 399.634 kb on - strand, within HMPREF1058_RS17550 at 399.674 kb on + strand, within HMPREF1058_RS17550 at 399.677 kb on - strand, within HMPREF1058_RS17550 at 399.773 kb on + strand, within HMPREF1058_RS17550 at 399.808 kb on + strand, within HMPREF1058_RS17550 at 399.837 kb on - strand, within HMPREF1058_RS17550 at 399.837 kb on - strand, within HMPREF1058_RS17550 at 400.010 kb on - strand, within HMPREF1058_RS17550 at 400.018 kb on - strand, within HMPREF1058_RS17550 at 400.180 kb on + strand at 400.180 kb on + strand at 400.186 kb on + strand at 400.186 kb on + strand at 400.187 kb on - strand at 400.223 kb on + strand at 400.223 kb on + strand at 400.224 kb on - strand at 400.244 kb on + strand at 400.247 kb on - strand at 400.257 kb on - strand at 400.263 kb on + strand at 401.486 kb on - strand, within HMPREF1058_RS0119340 at 401.497 kb on - strand, within HMPREF1058_RS0119340 at 401.497 kb on - strand, within HMPREF1058_RS0119340 at 401.497 kb on - strand, within HMPREF1058_RS0119340 at 401.947 kb on + strand at 402.179 kb on - strand at 402.179 kb on - strand at 402.240 kb on + strand at 402.241 kb on - strand at 402.245 kb on + strand at 402.246 kb on - strand at 402.247 kb on - strand at 402.252 kb on - strand, within HMPREF1058_RS17545 at 402.265 kb on - strand, within HMPREF1058_RS17545 at 402.359 kb on - strand, within HMPREF1058_RS17545 at 402.361 kb on - strand, within HMPREF1058_RS17545 at 402.365 kb on + strand, within HMPREF1058_RS17545 at 402.365 kb on + strand, within HMPREF1058_RS17545 at 402.412 kb on + strand, within HMPREF1058_RS17545 at 402.413 kb on - strand, within HMPREF1058_RS17545 at 402.421 kb on - strand, within HMPREF1058_RS17545 at 402.495 kb on - strand, within HMPREF1058_RS17545 at 402.495 kb on - strand, within HMPREF1058_RS17545 at 402.513 kb on - strand, within HMPREF1058_RS17545 at 402.548 kb on + strand, within HMPREF1058_RS17545 at 402.549 kb on - strand, within HMPREF1058_RS17545 at 402.552 kb on + strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.555 kb on - strand, within HMPREF1058_RS17545 at 402.579 kb on - strand, within HMPREF1058_RS17545 at 402.581 kb on + strand, within HMPREF1058_RS17545 at 402.582 kb on - strand, within HMPREF1058_RS17545 at 402.650 kb on + strand at 402.663 kb on - strand at 402.689 kb on + strand at 402.693 kb on - strand at 402.736 kb on - strand at 402.801 kb on - strand, within HMPREF1058_RS0119345 at 402.801 kb on - strand, within HMPREF1058_RS0119345 at 402.838 kb on - strand, within HMPREF1058_RS0119345 at 402.844 kb on + strand at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.846 kb on + strand, within HMPREF1058_RS0119345 at 402.900 kb on + strand, within HMPREF1058_RS0119345 at 402.910 kb on - strand, within HMPREF1058_RS0119345 at 402.914 kb on - strand, within HMPREF1058_RS0119345 at 402.923 kb on + strand, within HMPREF1058_RS0119345 at 402.923 kb on + strand, within HMPREF1058_RS0119345 at 402.954 kb on + strand, within HMPREF1058_RS0119345 at 402.966 kb on + strand, within HMPREF1058_RS0119345 at 402.967 kb on - strand, within HMPREF1058_RS0119345 at 403.078 kb on - strand, within HMPREF1058_RS0119345
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 399,600 + HMPREF1058_RS17550 0.56 +0.8 399,601 - HMPREF1058_RS17550 0.56 -0.2 399,612 + HMPREF1058_RS17550 0.57 -0.6 399,613 - HMPREF1058_RS17550 0.57 +1.0 399,634 - HMPREF1058_RS17550 0.58 +1.1 399,674 + HMPREF1058_RS17550 0.61 -0.1 399,677 - HMPREF1058_RS17550 0.61 -0.9 399,773 + HMPREF1058_RS17550 0.67 +0.1 399,808 + HMPREF1058_RS17550 0.69 -0.2 399,837 - HMPREF1058_RS17550 0.71 +0.1 399,837 - HMPREF1058_RS17550 0.71 -0.0 400,010 - HMPREF1058_RS17550 0.82 -0.4 400,018 - HMPREF1058_RS17550 0.83 +0.7 400,180 + +0.8 400,180 + +0.0 400,186 + +0.8 400,186 + -0.7 400,187 - -0.5 400,223 + +1.1 400,223 + -0.5 400,224 - -0.1 400,244 + +0.4 400,247 - -1.9 400,257 - -1.2 400,263 + +0.7 401,486 - HMPREF1058_RS0119340 0.64 +0.3 401,497 - HMPREF1058_RS0119340 0.65 -0.7 401,497 - HMPREF1058_RS0119340 0.65 +0.0 401,497 - HMPREF1058_RS0119340 0.65 +1.7 401,947 + -0.1 402,179 - -0.4 402,179 - -3.0 402,240 + +0.4 402,241 - -1.6 402,245 + -1.1 402,246 - -0.5 402,247 - +0.2 402,252 - HMPREF1058_RS17545 0.11 +0.8 402,265 - HMPREF1058_RS17545 0.14 -0.7 402,359 - HMPREF1058_RS17545 0.33 +2.7 402,361 - HMPREF1058_RS17545 0.34 +0.2 402,365 + HMPREF1058_RS17545 0.35 +0.5 402,365 + HMPREF1058_RS17545 0.35 -1.0 402,412 + HMPREF1058_RS17545 0.45 +1.2 402,413 - HMPREF1058_RS17545 0.45 +0.2 402,421 - HMPREF1058_RS17545 0.46 -0.0 402,495 - HMPREF1058_RS17545 0.62 +0.9 402,495 - HMPREF1058_RS17545 0.62 +0.3 402,513 - HMPREF1058_RS17545 0.66 +2.3 402,548 + HMPREF1058_RS17545 0.73 +0.9 402,549 - HMPREF1058_RS17545 0.73 +1.0 402,552 + HMPREF1058_RS17545 0.74 -0.8 402,553 - HMPREF1058_RS17545 0.74 -1.0 402,553 - HMPREF1058_RS17545 0.74 +0.7 402,553 - HMPREF1058_RS17545 0.74 +0.1 402,555 - HMPREF1058_RS17545 0.75 +0.6 402,579 - HMPREF1058_RS17545 0.80 -0.5 402,581 + HMPREF1058_RS17545 0.80 +1.9 402,582 - HMPREF1058_RS17545 0.80 -0.2 402,650 + +0.0 402,663 - +0.4 402,689 + +0.9 402,693 - +0.1 402,736 - -0.6 402,801 - HMPREF1058_RS0119345 0.16 +0.3 402,801 - HMPREF1058_RS0119345 0.16 -0.2 402,838 - HMPREF1058_RS0119345 0.21 +1.5 402,844 + -1.4 402,845 - HMPREF1058_RS0119345 0.21 +0.7 402,845 - HMPREF1058_RS0119345 0.21 -1.0 402,845 - HMPREF1058_RS0119345 0.21 +0.8 402,846 + HMPREF1058_RS0119345 0.22 -0.3 402,900 + HMPREF1058_RS0119345 0.29 +0.5 402,910 - HMPREF1058_RS0119345 0.30 +0.7 402,914 - HMPREF1058_RS0119345 0.30 -1.2 402,923 + HMPREF1058_RS0119345 0.32 +0.1 402,923 + HMPREF1058_RS0119345 0.32 -0.9 402,954 + HMPREF1058_RS0119345 0.36 +0.0 402,966 + HMPREF1058_RS0119345 0.37 +0.1 402,967 - HMPREF1058_RS0119345 0.37 -0.5 403,078 - HMPREF1058_RS0119345 0.52 +0.3
Or see this region's nucleotide sequence