Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00100 and HMPREF1058_RS00095 are separated by 211 nucleotides HMPREF1058_RS00095 and HMPREF1058_RS00090 overlap by 22 nucleotides
HMPREF1058_RS00100: HMPREF1058_RS00100 - beta-glucuronidase, at 59,162 to 62,029
_RS00100
HMPREF1058_RS00095: HMPREF1058_RS00095 - family 43 glycosylhydrolase, at 62,241 to 64,595
_RS00095
HMPREF1058_RS00090: HMPREF1058_RS00090 - beta-galactosidase, at 64,574 to 66,688
_RS00090
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.242 kb on - strand, within HMPREF1058_RS00100 at 61.352 kb on + strand, within HMPREF1058_RS00100 at 61.504 kb on + strand, within HMPREF1058_RS00100 at 61.537 kb on + strand, within HMPREF1058_RS00100 at 61.537 kb on + strand, within HMPREF1058_RS00100 at 61.538 kb on - strand, within HMPREF1058_RS00100 at 61.538 kb on - strand, within HMPREF1058_RS00100 at 61.542 kb on + strand, within HMPREF1058_RS00100 at 61.610 kb on + strand, within HMPREF1058_RS00100 at 61.639 kb on + strand, within HMPREF1058_RS00100 at 61.639 kb on + strand, within HMPREF1058_RS00100 at 61.640 kb on - strand at 61.640 kb on - strand, within HMPREF1058_RS00100 at 61.701 kb on + strand, within HMPREF1058_RS00100 at 61.701 kb on + strand, within HMPREF1058_RS00100 at 61.702 kb on - strand, within HMPREF1058_RS00100 at 61.776 kb on + strand at 61.783 kb on - strand at 62.000 kb on + strand at 62.033 kb on - strand at 62.105 kb on - strand at 62.145 kb on + strand at 62.145 kb on + strand at 62.146 kb on - strand at 62.146 kb on - strand at 62.146 kb on - strand at 62.167 kb on + strand at 62.176 kb on + strand at 62.214 kb on + strand at 62.215 kb on - strand at 62.227 kb on - strand at 62.227 kb on - strand at 62.237 kb on - strand at 62.237 kb on - strand at 62.522 kb on + strand, within HMPREF1058_RS00095 at 62.524 kb on + strand, within HMPREF1058_RS00095 at 62.525 kb on - strand, within HMPREF1058_RS00095 at 62.525 kb on - strand, within HMPREF1058_RS00095 at 62.606 kb on + strand, within HMPREF1058_RS00095 at 62.739 kb on + strand, within HMPREF1058_RS00095 at 62.740 kb on - strand, within HMPREF1058_RS00095 at 62.740 kb on - strand, within HMPREF1058_RS00095 at 62.828 kb on - strand, within HMPREF1058_RS00095 at 62.942 kb on + strand, within HMPREF1058_RS00095 at 63.039 kb on - strand, within HMPREF1058_RS00095 at 63.107 kb on - strand, within HMPREF1058_RS00095 at 63.160 kb on + strand, within HMPREF1058_RS00095 at 63.168 kb on - strand, within HMPREF1058_RS00095 at 63.180 kb on - strand, within HMPREF1058_RS00095 at 63.245 kb on + strand, within HMPREF1058_RS00095 at 63.246 kb on - strand, within HMPREF1058_RS00095 at 63.249 kb on + strand, within HMPREF1058_RS00095 at 63.250 kb on - strand, within HMPREF1058_RS00095 at 63.266 kb on + strand, within HMPREF1058_RS00095 at 63.391 kb on - strand, within HMPREF1058_RS00095 at 63.515 kb on + strand, within HMPREF1058_RS00095 at 63.515 kb on + strand, within HMPREF1058_RS00095 at 63.515 kb on + strand, within HMPREF1058_RS00095 at 63.516 kb on - strand, within HMPREF1058_RS00095 at 63.516 kb on - strand, within HMPREF1058_RS00095 at 63.576 kb on - strand, within HMPREF1058_RS00095 at 63.731 kb on + strand, within HMPREF1058_RS00095 at 63.798 kb on - strand, within HMPREF1058_RS00095 at 63.802 kb on - strand, within HMPREF1058_RS00095 at 63.808 kb on - strand, within HMPREF1058_RS00095 at 63.813 kb on + strand, within HMPREF1058_RS00095 at 63.814 kb on - strand, within HMPREF1058_RS00095 at 63.815 kb on + strand, within HMPREF1058_RS00095 at 63.837 kb on + strand, within HMPREF1058_RS00095 at 63.842 kb on - strand, within HMPREF1058_RS00095 at 63.842 kb on - strand, within HMPREF1058_RS00095 at 63.842 kb on - strand, within HMPREF1058_RS00095 at 63.962 kb on - strand, within HMPREF1058_RS00095 at 63.966 kb on + strand, within HMPREF1058_RS00095 at 63.989 kb on + strand, within HMPREF1058_RS00095 at 63.990 kb on - strand, within HMPREF1058_RS00095 at 63.990 kb on - strand, within HMPREF1058_RS00095 at 64.036 kb on + strand, within HMPREF1058_RS00095 at 64.036 kb on + strand, within HMPREF1058_RS00095 at 64.037 kb on - strand, within HMPREF1058_RS00095 at 64.037 kb on - strand, within HMPREF1058_RS00095 at 64.039 kb on - strand, within HMPREF1058_RS00095 at 64.073 kb on + strand, within HMPREF1058_RS00095 at 64.074 kb on - strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.272 kb on - strand, within HMPREF1058_RS00095 at 64.272 kb on - strand, within HMPREF1058_RS00095 at 64.273 kb on + strand, within HMPREF1058_RS00095 at 64.273 kb on + strand, within HMPREF1058_RS00095 at 64.273 kb on + strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.275 kb on + strand, within HMPREF1058_RS00095 at 64.275 kb on + strand, within HMPREF1058_RS00095 at 64.382 kb on - strand at 64.405 kb on + strand at 64.480 kb on + strand at 64.532 kb on - strand at 64.537 kb on - strand at 64.537 kb on - strand at 64.553 kb on - strand at 64.718 kb on + strand at 64.719 kb on - strand at 64.890 kb on - strand, within HMPREF1058_RS00090 at 64.912 kb on + strand, within HMPREF1058_RS00090 at 64.919 kb on - strand, within HMPREF1058_RS00090 at 64.952 kb on + strand, within HMPREF1058_RS00090 at 64.953 kb on - strand, within HMPREF1058_RS00090 at 65.051 kb on + strand, within HMPREF1058_RS00090 at 65.054 kb on - strand, within HMPREF1058_RS00090 at 65.144 kb on + strand, within HMPREF1058_RS00090 at 65.253 kb on - strand, within HMPREF1058_RS00090 at 65.417 kb on - strand, within HMPREF1058_RS00090 at 65.420 kb on + strand, within HMPREF1058_RS00090 at 65.420 kb on + strand, within HMPREF1058_RS00090 at 65.421 kb on - strand, within HMPREF1058_RS00090 at 65.429 kb on - strand, within HMPREF1058_RS00090 at 65.446 kb on + strand, within HMPREF1058_RS00090 at 65.448 kb on + strand, within HMPREF1058_RS00090 at 65.448 kb on + strand, within HMPREF1058_RS00090 at 65.449 kb on - strand, within HMPREF1058_RS00090 at 65.449 kb on - strand, within HMPREF1058_RS00090 at 65.482 kb on + strand, within HMPREF1058_RS00090 at 65.492 kb on - strand, within HMPREF1058_RS00090 at 65.499 kb on - strand, within HMPREF1058_RS00090 at 65.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 61,242 - HMPREF1058_RS00100 0.73 +1.5 61,352 + HMPREF1058_RS00100 0.76 -0.0 61,504 + HMPREF1058_RS00100 0.82 -0.1 61,537 + HMPREF1058_RS00100 0.83 +1.2 61,537 + HMPREF1058_RS00100 0.83 -0.8 61,538 - HMPREF1058_RS00100 0.83 -0.6 61,538 - HMPREF1058_RS00100 0.83 -0.4 61,542 + HMPREF1058_RS00100 0.83 -0.6 61,610 + HMPREF1058_RS00100 0.85 -0.7 61,639 + HMPREF1058_RS00100 0.86 -0.3 61,639 + HMPREF1058_RS00100 0.86 -0.0 61,640 - -1.0 61,640 - HMPREF1058_RS00100 0.86 -0.1 61,701 + HMPREF1058_RS00100 0.89 -0.4 61,701 + HMPREF1058_RS00100 0.89 -0.4 61,702 - HMPREF1058_RS00100 0.89 -0.2 61,776 + -0.4 61,783 - -0.5 62,000 + +1.2 62,033 - +0.2 62,105 - -0.3 62,145 + -0.4 62,145 + +0.2 62,146 - -0.3 62,146 - +1.2 62,146 - -0.4 62,167 + +0.0 62,176 + +0.4 62,214 + -0.7 62,215 - +0.1 62,227 - -0.3 62,227 - +1.7 62,237 - -1.1 62,237 - -0.6 62,522 + HMPREF1058_RS00095 0.12 -0.3 62,524 + HMPREF1058_RS00095 0.12 -0.3 62,525 - HMPREF1058_RS00095 0.12 +1.0 62,525 - HMPREF1058_RS00095 0.12 -1.0 62,606 + HMPREF1058_RS00095 0.15 -0.5 62,739 + HMPREF1058_RS00095 0.21 -0.7 62,740 - HMPREF1058_RS00095 0.21 +0.3 62,740 - HMPREF1058_RS00095 0.21 -1.0 62,828 - HMPREF1058_RS00095 0.25 +0.1 62,942 + HMPREF1058_RS00095 0.30 -0.4 63,039 - HMPREF1058_RS00095 0.34 +1.0 63,107 - HMPREF1058_RS00095 0.37 -1.0 63,160 + HMPREF1058_RS00095 0.39 -0.5 63,168 - HMPREF1058_RS00095 0.39 +0.3 63,180 - HMPREF1058_RS00095 0.40 -0.2 63,245 + HMPREF1058_RS00095 0.43 -0.9 63,246 - HMPREF1058_RS00095 0.43 -0.2 63,249 + HMPREF1058_RS00095 0.43 -0.1 63,250 - HMPREF1058_RS00095 0.43 -1.6 63,266 + HMPREF1058_RS00095 0.44 -0.6 63,391 - HMPREF1058_RS00095 0.49 +2.8 63,515 + HMPREF1058_RS00095 0.54 +0.0 63,515 + HMPREF1058_RS00095 0.54 +0.2 63,515 + HMPREF1058_RS00095 0.54 +0.5 63,516 - HMPREF1058_RS00095 0.54 -0.3 63,516 - HMPREF1058_RS00095 0.54 -0.4 63,576 - HMPREF1058_RS00095 0.57 -0.2 63,731 + HMPREF1058_RS00095 0.63 -0.4 63,798 - HMPREF1058_RS00095 0.66 -1.7 63,802 - HMPREF1058_RS00095 0.66 -0.1 63,808 - HMPREF1058_RS00095 0.67 +1.1 63,813 + HMPREF1058_RS00095 0.67 -0.8 63,814 - HMPREF1058_RS00095 0.67 -0.6 63,815 + HMPREF1058_RS00095 0.67 +0.2 63,837 + HMPREF1058_RS00095 0.68 +0.1 63,842 - HMPREF1058_RS00095 0.68 -0.5 63,842 - HMPREF1058_RS00095 0.68 -0.2 63,842 - HMPREF1058_RS00095 0.68 -1.1 63,962 - HMPREF1058_RS00095 0.73 -2.6 63,966 + HMPREF1058_RS00095 0.73 -0.8 63,989 + HMPREF1058_RS00095 0.74 -0.1 63,990 - HMPREF1058_RS00095 0.74 +0.2 63,990 - HMPREF1058_RS00095 0.74 -0.8 64,036 + HMPREF1058_RS00095 0.76 -0.1 64,036 + HMPREF1058_RS00095 0.76 +0.4 64,037 - HMPREF1058_RS00095 0.76 -0.7 64,037 - HMPREF1058_RS00095 0.76 -0.9 64,039 - HMPREF1058_RS00095 0.76 +0.8 64,073 + HMPREF1058_RS00095 0.78 -0.2 64,074 - HMPREF1058_RS00095 0.78 +1.0 64,271 + HMPREF1058_RS00095 0.86 +0.3 64,271 + HMPREF1058_RS00095 0.86 -0.9 64,271 + HMPREF1058_RS00095 0.86 -0.4 64,271 + HMPREF1058_RS00095 0.86 -1.7 64,271 + HMPREF1058_RS00095 0.86 -0.6 64,271 + HMPREF1058_RS00095 0.86 +0.3 64,272 - HMPREF1058_RS00095 0.86 -0.1 64,272 - HMPREF1058_RS00095 0.86 +0.7 64,273 + HMPREF1058_RS00095 0.86 +0.2 64,273 + HMPREF1058_RS00095 0.86 +0.6 64,273 + HMPREF1058_RS00095 0.86 +0.4 64,274 - HMPREF1058_RS00095 0.86 +1.2 64,274 - HMPREF1058_RS00095 0.86 +0.5 64,274 - HMPREF1058_RS00095 0.86 +0.3 64,274 - HMPREF1058_RS00095 0.86 +0.5 64,274 - HMPREF1058_RS00095 0.86 -1.0 64,274 - HMPREF1058_RS00095 0.86 -0.3 64,274 - HMPREF1058_RS00095 0.86 -1.0 64,275 + HMPREF1058_RS00095 0.86 +0.3 64,275 + HMPREF1058_RS00095 0.86 +0.4 64,382 - +0.2 64,405 + -0.4 64,480 + -0.4 64,532 - -0.2 64,537 - +0.6 64,537 - +0.8 64,553 - -0.1 64,718 + +2.0 64,719 - -0.4 64,890 - HMPREF1058_RS00090 0.15 +2.9 64,912 + HMPREF1058_RS00090 0.16 -0.1 64,919 - HMPREF1058_RS00090 0.16 +0.5 64,952 + HMPREF1058_RS00090 0.18 -0.6 64,953 - HMPREF1058_RS00090 0.18 -2.3 65,051 + HMPREF1058_RS00090 0.23 -3.3 65,054 - HMPREF1058_RS00090 0.23 -0.3 65,144 + HMPREF1058_RS00090 0.27 -0.0 65,253 - HMPREF1058_RS00090 0.32 +1.9 65,417 - HMPREF1058_RS00090 0.40 +0.2 65,420 + HMPREF1058_RS00090 0.40 -0.3 65,420 + HMPREF1058_RS00090 0.40 +0.3 65,421 - HMPREF1058_RS00090 0.40 -1.1 65,429 - HMPREF1058_RS00090 0.40 -0.3 65,446 + HMPREF1058_RS00090 0.41 +1.6 65,448 + HMPREF1058_RS00090 0.41 +0.4 65,448 + HMPREF1058_RS00090 0.41 +0.1 65,449 - HMPREF1058_RS00090 0.41 -0.9 65,449 - HMPREF1058_RS00090 0.41 +0.8 65,482 + HMPREF1058_RS00090 0.43 -0.1 65,492 - HMPREF1058_RS00090 0.43 -0.9 65,499 - HMPREF1058_RS00090 0.44 +0.0 65,594 - -1.4
Or see this region's nucleotide sequence