Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00090

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00095 and HMPREF1058_RS00090 overlap by 22 nucleotidesHMPREF1058_RS00090 and HMPREF1058_RS00085 are separated by 118 nucleotides HMPREF1058_RS00095: HMPREF1058_RS00095 - family 43 glycosylhydrolase, at 62,241 to 64,595 _RS00095 HMPREF1058_RS00090: HMPREF1058_RS00090 - beta-galactosidase, at 64,574 to 66,688 _RS00090 HMPREF1058_RS00085: HMPREF1058_RS00085 - glycoside hydrolase family 88 protein, at 66,807 to 67,937 _RS00085 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 63.576 kb on - strand, within HMPREF1058_RS00095at 63.731 kb on + strand, within HMPREF1058_RS00095at 63.798 kb on - strand, within HMPREF1058_RS00095at 63.802 kb on - strand, within HMPREF1058_RS00095at 63.808 kb on - strand, within HMPREF1058_RS00095at 63.813 kb on + strand, within HMPREF1058_RS00095at 63.814 kb on - strand, within HMPREF1058_RS00095at 63.815 kb on + strand, within HMPREF1058_RS00095at 63.837 kb on + strand, within HMPREF1058_RS00095at 63.842 kb on - strand, within HMPREF1058_RS00095at 63.842 kb on - strand, within HMPREF1058_RS00095at 63.842 kb on - strand, within HMPREF1058_RS00095at 63.962 kb on - strand, within HMPREF1058_RS00095at 63.966 kb on + strand, within HMPREF1058_RS00095at 63.989 kb on + strand, within HMPREF1058_RS00095at 63.990 kb on - strand, within HMPREF1058_RS00095at 63.990 kb on - strand, within HMPREF1058_RS00095at 64.036 kb on + strand, within HMPREF1058_RS00095at 64.036 kb on + strand, within HMPREF1058_RS00095at 64.037 kb on - strand, within HMPREF1058_RS00095at 64.037 kb on - strand, within HMPREF1058_RS00095at 64.039 kb on - strand, within HMPREF1058_RS00095at 64.073 kb on + strand, within HMPREF1058_RS00095at 64.074 kb on - strand, within HMPREF1058_RS00095at 64.271 kb on + strand, within HMPREF1058_RS00095at 64.271 kb on + strand, within HMPREF1058_RS00095at 64.271 kb on + strand, within HMPREF1058_RS00095at 64.271 kb on + strand, within HMPREF1058_RS00095at 64.271 kb on + strand, within HMPREF1058_RS00095at 64.271 kb on + strand, within HMPREF1058_RS00095at 64.272 kb on - strand, within HMPREF1058_RS00095at 64.272 kb on - strand, within HMPREF1058_RS00095at 64.273 kb on + strand, within HMPREF1058_RS00095at 64.273 kb on + strand, within HMPREF1058_RS00095at 64.273 kb on + strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.274 kb on - strand, within HMPREF1058_RS00095at 64.275 kb on + strand, within HMPREF1058_RS00095at 64.275 kb on + strand, within HMPREF1058_RS00095at 64.382 kb on - strandat 64.405 kb on + strandat 64.480 kb on + strandat 64.532 kb on - strandat 64.537 kb on - strandat 64.537 kb on - strandat 64.553 kb on - strandat 64.718 kb on + strandat 64.719 kb on - strandat 64.890 kb on - strand, within HMPREF1058_RS00090at 64.912 kb on + strand, within HMPREF1058_RS00090at 64.919 kb on - strand, within HMPREF1058_RS00090at 64.952 kb on + strand, within HMPREF1058_RS00090at 64.953 kb on - strand, within HMPREF1058_RS00090at 65.051 kb on + strand, within HMPREF1058_RS00090at 65.054 kb on - strand, within HMPREF1058_RS00090at 65.144 kb on + strand, within HMPREF1058_RS00090at 65.253 kb on - strand, within HMPREF1058_RS00090at 65.417 kb on - strand, within HMPREF1058_RS00090at 65.420 kb on + strand, within HMPREF1058_RS00090at 65.420 kb on + strand, within HMPREF1058_RS00090at 65.421 kb on - strand, within HMPREF1058_RS00090at 65.429 kb on - strand, within HMPREF1058_RS00090at 65.446 kb on + strand, within HMPREF1058_RS00090at 65.448 kb on + strand, within HMPREF1058_RS00090at 65.448 kb on + strand, within HMPREF1058_RS00090at 65.449 kb on - strand, within HMPREF1058_RS00090at 65.449 kb on - strand, within HMPREF1058_RS00090at 65.482 kb on + strand, within HMPREF1058_RS00090at 65.492 kb on - strand, within HMPREF1058_RS00090at 65.499 kb on - strand, within HMPREF1058_RS00090at 65.594 kb on - strandat 65.597 kb on + strand, within HMPREF1058_RS00090at 65.597 kb on + strand, within HMPREF1058_RS00090at 65.604 kb on + strand, within HMPREF1058_RS00090at 65.642 kb on - strand, within HMPREF1058_RS00090at 65.691 kb on + strand, within HMPREF1058_RS00090at 65.713 kb on + strand, within HMPREF1058_RS00090at 65.719 kb on + strand, within HMPREF1058_RS00090at 65.720 kb on - strand, within HMPREF1058_RS00090at 65.723 kb on + strand, within HMPREF1058_RS00090at 65.724 kb on - strand, within HMPREF1058_RS00090at 65.745 kb on - strand, within HMPREF1058_RS00090at 66.129 kb on - strand, within HMPREF1058_RS00090at 66.129 kb on - strand, within HMPREF1058_RS00090at 66.262 kb on - strand, within HMPREF1058_RS00090at 66.310 kb on + strand, within HMPREF1058_RS00090at 66.360 kb on + strand, within HMPREF1058_RS00090at 66.371 kb on + strand, within HMPREF1058_RS00090at 66.374 kb on - strand, within HMPREF1058_RS00090at 66.374 kb on - strand, within HMPREF1058_RS00090at 66.416 kb on - strand, within HMPREF1058_RS00090at 66.552 kb on - strandat 66.573 kb on + strandat 66.582 kb on - strandat 66.670 kb on - strandat 66.670 kb on - strandat 66.679 kb on + strandat 66.694 kb on + strandat 66.750 kb on - strandat 66.769 kb on + strandat 66.770 kb on - strandat 66.853 kb on - strandat 66.886 kb on + strandat 66.930 kb on + strand, within HMPREF1058_RS00085at 66.975 kb on - strand, within HMPREF1058_RS00085at 67.056 kb on + strand, within HMPREF1058_RS00085at 67.057 kb on - strand, within HMPREF1058_RS00085at 67.112 kb on + strand, within HMPREF1058_RS00085at 67.113 kb on - strand, within HMPREF1058_RS00085at 67.116 kb on + strand, within HMPREF1058_RS00085at 67.116 kb on + strand, within HMPREF1058_RS00085at 67.137 kb on - strand, within HMPREF1058_RS00085at 67.228 kb on - strand, within HMPREF1058_RS00085at 67.234 kb on - strand, within HMPREF1058_RS00085at 67.247 kb on - strand, within HMPREF1058_RS00085at 67.248 kb on + strand, within HMPREF1058_RS00085at 67.300 kb on + strand, within HMPREF1058_RS00085at 67.351 kb on + strand, within HMPREF1058_RS00085at 67.351 kb on + strand, within HMPREF1058_RS00085at 67.351 kb on + strand, within HMPREF1058_RS00085at 67.384 kb on + strand, within HMPREF1058_RS00085at 67.384 kb on + strand, within HMPREF1058_RS00085at 67.385 kb on - strand, within HMPREF1058_RS00085at 67.385 kb on - strand, within HMPREF1058_RS00085at 67.390 kb on + strand, within HMPREF1058_RS00085at 67.390 kb on + strand, within HMPREF1058_RS00085at 67.453 kb on - strand, within HMPREF1058_RS00085at 67.498 kb on - strand, within HMPREF1058_RS00085at 67.520 kb on + strand, within HMPREF1058_RS00085at 67.524 kb on + strand, within HMPREF1058_RS00085at 67.524 kb on + strand, within HMPREF1058_RS00085at 67.525 kb on - strand, within HMPREF1058_RS00085at 67.525 kb on - strand, within HMPREF1058_RS00085at 67.575 kb on + strand, within HMPREF1058_RS00085at 67.586 kb on - strand, within HMPREF1058_RS00085at 67.604 kb on - strand, within HMPREF1058_RS00085at 67.675 kb on + strand, within HMPREF1058_RS00085at 67.679 kb on + strand, within HMPREF1058_RS00085at 67.680 kb on - strand, within HMPREF1058_RS00085

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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63,576 - HMPREF1058_RS00095 0.57 -0.2
63,731 + HMPREF1058_RS00095 0.63 -0.4
63,798 - HMPREF1058_RS00095 0.66 -1.7
63,802 - HMPREF1058_RS00095 0.66 -0.1
63,808 - HMPREF1058_RS00095 0.67 +1.1
63,813 + HMPREF1058_RS00095 0.67 -0.8
63,814 - HMPREF1058_RS00095 0.67 -0.6
63,815 + HMPREF1058_RS00095 0.67 +0.2
63,837 + HMPREF1058_RS00095 0.68 +0.1
63,842 - HMPREF1058_RS00095 0.68 -0.5
63,842 - HMPREF1058_RS00095 0.68 -0.2
63,842 - HMPREF1058_RS00095 0.68 -1.1
63,962 - HMPREF1058_RS00095 0.73 -2.6
63,966 + HMPREF1058_RS00095 0.73 -0.8
63,989 + HMPREF1058_RS00095 0.74 -0.1
63,990 - HMPREF1058_RS00095 0.74 +0.2
63,990 - HMPREF1058_RS00095 0.74 -0.8
64,036 + HMPREF1058_RS00095 0.76 -0.1
64,036 + HMPREF1058_RS00095 0.76 +0.4
64,037 - HMPREF1058_RS00095 0.76 -0.7
64,037 - HMPREF1058_RS00095 0.76 -0.9
64,039 - HMPREF1058_RS00095 0.76 +0.8
64,073 + HMPREF1058_RS00095 0.78 -0.2
64,074 - HMPREF1058_RS00095 0.78 +1.0
64,271 + HMPREF1058_RS00095 0.86 +0.3
64,271 + HMPREF1058_RS00095 0.86 -0.9
64,271 + HMPREF1058_RS00095 0.86 -0.4
64,271 + HMPREF1058_RS00095 0.86 -1.7
64,271 + HMPREF1058_RS00095 0.86 -0.6
64,271 + HMPREF1058_RS00095 0.86 +0.3
64,272 - HMPREF1058_RS00095 0.86 -0.1
64,272 - HMPREF1058_RS00095 0.86 +0.7
64,273 + HMPREF1058_RS00095 0.86 +0.2
64,273 + HMPREF1058_RS00095 0.86 +0.6
64,273 + HMPREF1058_RS00095 0.86 +0.4
64,274 - HMPREF1058_RS00095 0.86 +1.2
64,274 - HMPREF1058_RS00095 0.86 +0.5
64,274 - HMPREF1058_RS00095 0.86 +0.3
64,274 - HMPREF1058_RS00095 0.86 +0.5
64,274 - HMPREF1058_RS00095 0.86 -1.0
64,274 - HMPREF1058_RS00095 0.86 -0.3
64,274 - HMPREF1058_RS00095 0.86 -1.0
64,275 + HMPREF1058_RS00095 0.86 +0.3
64,275 + HMPREF1058_RS00095 0.86 +0.4
64,382 - +0.2
64,405 + -0.4
64,480 + -0.4
64,532 - -0.2
64,537 - +0.6
64,537 - +0.8
64,553 - -0.1
64,718 + +2.0
64,719 - -0.4
64,890 - HMPREF1058_RS00090 0.15 +2.9
64,912 + HMPREF1058_RS00090 0.16 -0.1
64,919 - HMPREF1058_RS00090 0.16 +0.5
64,952 + HMPREF1058_RS00090 0.18 -0.6
64,953 - HMPREF1058_RS00090 0.18 -2.3
65,051 + HMPREF1058_RS00090 0.23 -3.3
65,054 - HMPREF1058_RS00090 0.23 -0.3
65,144 + HMPREF1058_RS00090 0.27 -0.0
65,253 - HMPREF1058_RS00090 0.32 +1.9
65,417 - HMPREF1058_RS00090 0.40 +0.2
65,420 + HMPREF1058_RS00090 0.40 -0.3
65,420 + HMPREF1058_RS00090 0.40 +0.3
65,421 - HMPREF1058_RS00090 0.40 -1.1
65,429 - HMPREF1058_RS00090 0.40 -0.3
65,446 + HMPREF1058_RS00090 0.41 +1.6
65,448 + HMPREF1058_RS00090 0.41 +0.4
65,448 + HMPREF1058_RS00090 0.41 +0.1
65,449 - HMPREF1058_RS00090 0.41 -0.9
65,449 - HMPREF1058_RS00090 0.41 +0.8
65,482 + HMPREF1058_RS00090 0.43 -0.1
65,492 - HMPREF1058_RS00090 0.43 -0.9
65,499 - HMPREF1058_RS00090 0.44 +0.0
65,594 - -1.4
65,597 + HMPREF1058_RS00090 0.48 +0.6
65,597 + HMPREF1058_RS00090 0.48 +1.8
65,604 + HMPREF1058_RS00090 0.49 +0.1
65,642 - HMPREF1058_RS00090 0.50 +0.1
65,691 + HMPREF1058_RS00090 0.53 +1.1
65,713 + HMPREF1058_RS00090 0.54 +0.3
65,719 + HMPREF1058_RS00090 0.54 +0.0
65,720 - HMPREF1058_RS00090 0.54 +0.4
65,723 + HMPREF1058_RS00090 0.54 +0.2
65,724 - HMPREF1058_RS00090 0.54 -0.4
65,745 - HMPREF1058_RS00090 0.55 +0.2
66,129 - HMPREF1058_RS00090 0.74 -0.1
66,129 - HMPREF1058_RS00090 0.74 -0.8
66,262 - HMPREF1058_RS00090 0.80 -0.7
66,310 + HMPREF1058_RS00090 0.82 -0.6
66,360 + HMPREF1058_RS00090 0.84 +0.7
66,371 + HMPREF1058_RS00090 0.85 -0.5
66,374 - HMPREF1058_RS00090 0.85 +0.6
66,374 - HMPREF1058_RS00090 0.85 -0.4
66,416 - HMPREF1058_RS00090 0.87 +0.6
66,552 - +0.5
66,573 + -0.6
66,582 - -0.5
66,670 - -0.3
66,670 - +0.4
66,679 + +3.2
66,694 + +0.2
66,750 - -0.3
66,769 + -0.3
66,770 - -0.4
66,853 - -0.1
66,886 + -0.2
66,930 + HMPREF1058_RS00085 0.11 -0.7
66,975 - HMPREF1058_RS00085 0.15 -0.3
67,056 + HMPREF1058_RS00085 0.22 +1.6
67,057 - HMPREF1058_RS00085 0.22 -1.1
67,112 + HMPREF1058_RS00085 0.27 -0.4
67,113 - HMPREF1058_RS00085 0.27 -1.1
67,116 + HMPREF1058_RS00085 0.27 +0.4
67,116 + HMPREF1058_RS00085 0.27 +3.2
67,137 - HMPREF1058_RS00085 0.29 -0.7
67,228 - HMPREF1058_RS00085 0.37 -0.6
67,234 - HMPREF1058_RS00085 0.38 +0.0
67,247 - HMPREF1058_RS00085 0.39 +1.1
67,248 + HMPREF1058_RS00085 0.39 -1.2
67,300 + HMPREF1058_RS00085 0.44 -0.4
67,351 + HMPREF1058_RS00085 0.48 -0.1
67,351 + HMPREF1058_RS00085 0.48 -0.2
67,351 + HMPREF1058_RS00085 0.48 -0.3
67,384 + HMPREF1058_RS00085 0.51 +1.4
67,384 + HMPREF1058_RS00085 0.51 +0.5
67,385 - HMPREF1058_RS00085 0.51 -0.5
67,385 - HMPREF1058_RS00085 0.51 -0.2
67,390 + HMPREF1058_RS00085 0.52 -0.1
67,390 + HMPREF1058_RS00085 0.52 +0.9
67,453 - HMPREF1058_RS00085 0.57 -1.5
67,498 - HMPREF1058_RS00085 0.61 -0.7
67,520 + HMPREF1058_RS00085 0.63 -1.5
67,524 + HMPREF1058_RS00085 0.63 +0.1
67,524 + HMPREF1058_RS00085 0.63 -1.8
67,525 - HMPREF1058_RS00085 0.63 -0.7
67,525 - HMPREF1058_RS00085 0.63 -0.6
67,575 + HMPREF1058_RS00085 0.68 +0.3
67,586 - HMPREF1058_RS00085 0.69 -1.4
67,604 - HMPREF1058_RS00085 0.70 -0.6
67,675 + HMPREF1058_RS00085 0.77 -0.3
67,679 + HMPREF1058_RS00085 0.77 -0.3
67,680 - HMPREF1058_RS00085 0.77 -1.5

Or see this region's nucleotide sequence