Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00775

Experiment: Pseudomonas_EB271-B4-1_fractionated_DNA (C); Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00770 and RR42_RS00775 are separated by 35 nucleotidesRR42_RS00775 and RR42_RS00780 are separated by 238 nucleotidesRR42_RS00780 and RR42_RS00785 are separated by 316 nucleotides RR42_RS00770: RR42_RS00770 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 191,617 to 192,684 _RS00770 RR42_RS00775: RR42_RS00775 - methionine synthase, at 192,720 to 195,467 _RS00775 RR42_RS00780: RR42_RS00780 - hypothetical protein, at 195,706 to 196,065 _RS00780 RR42_RS00785: RR42_RS00785 - LuxR family transcriptional regulator, at 196,382 to 197,014 _RS00785 Position (kb) 192 193 194 195 196Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 191.746 kb on + strand, within RR42_RS00770at 191.746 kb on + strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.832 kb on - strand, within RR42_RS00770at 191.869 kb on + strand, within RR42_RS00770at 191.870 kb on - strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.905 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.090 kb on - strand, within RR42_RS00770at 192.090 kb on - strand, within RR42_RS00770at 192.139 kb on + strand, within RR42_RS00770at 192.140 kb on - strand, within RR42_RS00770at 192.140 kb on - strand, within RR42_RS00770at 192.142 kb on + strand, within RR42_RS00770at 192.143 kb on - strand, within RR42_RS00770at 192.143 kb on - strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.609 kb on + strandat 193.246 kb on - strand, within RR42_RS00775at 193.246 kb on - strand, within RR42_RS00775at 193.246 kb on - strand, within RR42_RS00775at 193.344 kb on + strand, within RR42_RS00775at 193.396 kb on - strand, within RR42_RS00775at 193.396 kb on - strand, within RR42_RS00775at 193.427 kb on - strand, within RR42_RS00775at 193.485 kb on + strand, within RR42_RS00775at 193.546 kb on - strand, within RR42_RS00775at 194.090 kb on + strand, within RR42_RS00775at 194.217 kb on + strand, within RR42_RS00775at 194.247 kb on + strand, within RR42_RS00775at 194.248 kb on - strand, within RR42_RS00775at 194.350 kb on - strand, within RR42_RS00775at 194.350 kb on - strand, within RR42_RS00775at 194.350 kb on - strand, within RR42_RS00775at 194.419 kb on - strand, within RR42_RS00775at 194.419 kb on - strand, within RR42_RS00775at 194.442 kb on + strand, within RR42_RS00775at 194.442 kb on + strand, within RR42_RS00775at 194.541 kb on + strand, within RR42_RS00775at 194.541 kb on + strand, within RR42_RS00775at 194.589 kb on + strand, within RR42_RS00775at 194.590 kb on - strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.613 kb on + strand, within RR42_RS00775at 194.614 kb on - strand, within RR42_RS00775at 194.614 kb on - strand, within RR42_RS00775at 194.614 kb on - strand, within RR42_RS00775at 194.616 kb on - strand, within RR42_RS00775at 194.827 kb on - strand, within RR42_RS00775at 194.970 kb on + strand, within RR42_RS00775at 194.970 kb on + strand, within RR42_RS00775at 194.971 kb on - strand, within RR42_RS00775at 194.971 kb on - strand, within RR42_RS00775at 194.971 kb on - strand, within RR42_RS00775at 194.971 kb on - strand, within RR42_RS00775at 195.141 kb on + strand, within RR42_RS00775at 195.141 kb on + strand, within RR42_RS00775at 195.236 kb on + strandat 195.237 kb on - strandat 195.237 kb on - strandat 195.364 kb on - strandat 195.404 kb on + strandat 195.580 kb on + strandat 195.581 kb on - strandat 195.587 kb on + strandat 195.587 kb on + strandat 195.587 kb on + strandat 195.588 kb on - strandat 195.597 kb on + strandat 195.597 kb on + strandat 195.597 kb on + strandat 195.598 kb on - strandat 195.598 kb on - strandat 195.598 kb on - strandat 195.598 kb on - strandat 195.633 kb on - strandat 195.693 kb on + strandat 196.063 kb on + strandat 196.063 kb on + strandat 196.064 kb on - strandat 196.188 kb on + strandat 196.188 kb on + strandat 196.189 kb on - strandat 196.189 kb on - strandat 196.189 kb on - strandat 196.189 kb on - strandat 196.189 kb on - strandat 196.192 kb on + strandat 196.193 kb on - strandat 196.322 kb on + strandat 196.323 kb on - strandat 196.441 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pseudomonas_EB271-B4-1_fractionated_DNA (C); Aerobic
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191,746 + RR42_RS00770 0.12 -0.3
191,746 + RR42_RS00770 0.12 -0.9
191,747 - RR42_RS00770 0.12 -0.8
191,747 - RR42_RS00770 0.12 -0.5
191,747 - RR42_RS00770 0.12 -1.9
191,832 - RR42_RS00770 0.20 -1.6
191,869 + RR42_RS00770 0.24 -0.0
191,870 - RR42_RS00770 0.24 -1.5
191,904 + RR42_RS00770 0.27 -1.2
191,904 + RR42_RS00770 0.27 +0.1
191,904 + RR42_RS00770 0.27 -1.0
191,904 + RR42_RS00770 0.27 -1.3
191,905 - RR42_RS00770 0.27 +0.5
191,939 - RR42_RS00770 0.30 -1.9
191,939 - RR42_RS00770 0.30 -1.2
191,939 - RR42_RS00770 0.30 +0.6
192,011 - RR42_RS00770 0.37 +0.4
192,011 - RR42_RS00770 0.37 -0.4
192,011 - RR42_RS00770 0.37 -1.3
192,090 - RR42_RS00770 0.44 -0.6
192,090 - RR42_RS00770 0.44 +0.5
192,139 + RR42_RS00770 0.49 -1.5
192,140 - RR42_RS00770 0.49 -1.3
192,140 - RR42_RS00770 0.49 -0.8
192,142 + RR42_RS00770 0.49 +0.6
192,143 - RR42_RS00770 0.49 -1.6
192,143 - RR42_RS00770 0.49 +1.2
192,421 + RR42_RS00770 0.75 +0.5
192,421 + RR42_RS00770 0.75 +0.4
192,421 + RR42_RS00770 0.75 +1.4
192,609 + -0.8
193,246 - RR42_RS00775 0.19 -0.4
193,246 - RR42_RS00775 0.19 -1.0
193,246 - RR42_RS00775 0.19 -1.1
193,344 + RR42_RS00775 0.23 -0.7
193,396 - RR42_RS00775 0.25 -2.3
193,396 - RR42_RS00775 0.25 -1.0
193,427 - RR42_RS00775 0.26 -1.3
193,485 + RR42_RS00775 0.28 -1.0
193,546 - RR42_RS00775 0.30 -0.9
194,090 + RR42_RS00775 0.50 +0.4
194,217 + RR42_RS00775 0.54 -0.3
194,247 + RR42_RS00775 0.56 -1.4
194,248 - RR42_RS00775 0.56 -0.2
194,350 - RR42_RS00775 0.59 +0.1
194,350 - RR42_RS00775 0.59 -1.3
194,350 - RR42_RS00775 0.59 +1.3
194,419 - RR42_RS00775 0.62 -1.6
194,419 - RR42_RS00775 0.62 +0.1
194,442 + RR42_RS00775 0.63 -1.2
194,442 + RR42_RS00775 0.63 +0.5
194,541 + RR42_RS00775 0.66 -1.3
194,541 + RR42_RS00775 0.66 -1.2
194,589 + RR42_RS00775 0.68 -1.9
194,590 - RR42_RS00775 0.68 -1.9
194,613 + RR42_RS00775 0.69 -0.7
194,613 + RR42_RS00775 0.69 -4.3
194,613 + RR42_RS00775 0.69 -0.8
194,613 + RR42_RS00775 0.69 -0.8
194,613 + RR42_RS00775 0.69 -0.2
194,613 + RR42_RS00775 0.69 -1.0
194,613 + RR42_RS00775 0.69 -2.4
194,613 + RR42_RS00775 0.69 -0.5
194,614 - RR42_RS00775 0.69 -0.9
194,614 - RR42_RS00775 0.69 +0.4
194,614 - RR42_RS00775 0.69 -0.8
194,616 - RR42_RS00775 0.69 +0.1
194,827 - RR42_RS00775 0.77 -0.9
194,970 + RR42_RS00775 0.82 -2.1
194,970 + RR42_RS00775 0.82 -1.4
194,971 - RR42_RS00775 0.82 -1.7
194,971 - RR42_RS00775 0.82 -1.4
194,971 - RR42_RS00775 0.82 -1.8
194,971 - RR42_RS00775 0.82 +0.4
195,141 + RR42_RS00775 0.88 -0.8
195,141 + RR42_RS00775 0.88 -1.5
195,236 + -0.6
195,237 - -0.6
195,237 - +0.4
195,364 - -0.2
195,404 + -0.9
195,580 + -0.7
195,581 - -0.3
195,587 + -1.3
195,587 + -0.4
195,587 + -0.8
195,588 - -0.2
195,597 + +0.2
195,597 + +0.1
195,597 + +0.2
195,598 - +0.7
195,598 - +0.6
195,598 - +1.4
195,598 - +1.2
195,633 - +0.4
195,693 + -0.9
196,063 + -0.0
196,063 + +0.2
196,064 - -0.2
196,188 + +0.5
196,188 + +0.3
196,189 - +0.9
196,189 - -0.5
196,189 - -0.2
196,189 - +0.9
196,189 - -0.0
196,192 + -1.5
196,193 - -0.3
196,322 + -0.7
196,323 - +0.0
196,441 + +0.6

Or see this region's nucleotide sequence