Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19710

Experiment: Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall (C); Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19705 and RR42_RS19710 are separated by 143 nucleotidesRR42_RS19710 and RR42_RS19715 are separated by 103 nucleotides RR42_RS19705: RR42_RS19705 - sulfite dehydrogenase, at 4,255,854 to 4,257,218 _RS19705 RR42_RS19710: RR42_RS19710 - ArsR family transcriptional regulator, at 4,257,362 to 4,257,769 _RS19710 RR42_RS19715: RR42_RS19715 - flavocytochrome C, at 4,257,873 to 4,259,135 _RS19715 Position (kb) 4257 4258Strain fitness (log2 ratio) -1 0 1 2 3 4at 4256.519 kb on - strand, within RR42_RS19705at 4256.611 kb on + strand, within RR42_RS19705at 4256.612 kb on - strand, within RR42_RS19705at 4256.654 kb on + strand, within RR42_RS19705at 4256.654 kb on + strand, within RR42_RS19705at 4256.655 kb on - strand, within RR42_RS19705at 4256.723 kb on - strand, within RR42_RS19705at 4257.126 kb on + strandat 4257.126 kb on + strandat 4257.127 kb on - strandat 4257.511 kb on - strand, within RR42_RS19710at 4257.511 kb on - strand, within RR42_RS19710at 4257.558 kb on + strand, within RR42_RS19710at 4257.657 kb on - strand, within RR42_RS19710at 4257.693 kb on + strand, within RR42_RS19710at 4257.744 kb on - strandat 4257.745 kb on + strandat 4257.746 kb on - strandat 4257.752 kb on - strandat 4257.752 kb on - strandat 4257.753 kb on + strandat 4257.759 kb on + strandat 4257.760 kb on - strandat 4257.760 kb on - strandat 4257.760 kb on - strandat 4257.769 kb on + strandat 4257.772 kb on - strandat 4257.837 kb on + strandat 4257.919 kb on + strandat 4257.919 kb on + strandat 4257.920 kb on - strandat 4257.920 kb on - strandat 4257.920 kb on - strandat 4258.051 kb on + strand, within RR42_RS19715at 4258.052 kb on - strand, within RR42_RS19715at 4258.052 kb on - strand, within RR42_RS19715at 4258.066 kb on + strand, within RR42_RS19715at 4258.067 kb on - strand, within RR42_RS19715at 4258.148 kb on + strand, within RR42_RS19715at 4258.206 kb on - strand, within RR42_RS19715at 4258.399 kb on + strand, within RR42_RS19715at 4258.400 kb on - strand, within RR42_RS19715at 4258.400 kb on - strand, within RR42_RS19715at 4258.430 kb on - strand, within RR42_RS19715

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Per-strain Table

Position Strand Gene LocusTag Fraction Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall (C); Aerobic
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4,256,519 - RR42_RS19705 0.49 +4.0
4,256,611 + RR42_RS19705 0.55 +0.3
4,256,612 - RR42_RS19705 0.56 +0.3
4,256,654 + RR42_RS19705 0.59 +0.5
4,256,654 + RR42_RS19705 0.59 -0.2
4,256,655 - RR42_RS19705 0.59 +0.9
4,256,723 - RR42_RS19705 0.64 +0.0
4,257,126 + -0.9
4,257,126 + -0.1
4,257,127 - -1.2
4,257,511 - RR42_RS19710 0.37 +0.7
4,257,511 - RR42_RS19710 0.37 -0.5
4,257,558 + RR42_RS19710 0.48 -1.1
4,257,657 - RR42_RS19710 0.72 -1.0
4,257,693 + RR42_RS19710 0.81 -0.9
4,257,744 - -0.4
4,257,745 + -0.1
4,257,746 - -0.2
4,257,752 - -1.2
4,257,752 - -1.0
4,257,753 + +0.0
4,257,759 + +0.3
4,257,760 - -0.8
4,257,760 - -0.3
4,257,760 - -0.8
4,257,769 + -0.3
4,257,772 - -0.2
4,257,837 + -0.9
4,257,919 + +0.1
4,257,919 + -1.0
4,257,920 - -1.4
4,257,920 - +0.4
4,257,920 - +0.6
4,258,051 + RR42_RS19715 0.14 -0.3
4,258,052 - RR42_RS19715 0.14 -0.5
4,258,052 - RR42_RS19715 0.14 -0.0
4,258,066 + RR42_RS19715 0.15 +0.2
4,258,067 - RR42_RS19715 0.15 +0.8
4,258,148 + RR42_RS19715 0.22 +1.4
4,258,206 - RR42_RS19715 0.26 -1.1
4,258,399 + RR42_RS19715 0.42 -0.1
4,258,400 - RR42_RS19715 0.42 -0.8
4,258,400 - RR42_RS19715 0.42 +0.1
4,258,430 - RR42_RS19715 0.44 -0.0

Or see this region's nucleotide sequence