Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18270 and HMPREF1058_RS18265 are separated by 131 nucleotides HMPREF1058_RS18265 and HMPREF1058_RS18260 are separated by 21 nucleotides
HMPREF1058_RS18270: HMPREF1058_RS18270 - fructose-bisphosphatase class III, at 218,409 to 220,409
_RS18270
HMPREF1058_RS18265: HMPREF1058_RS18265 - aspartate 1-decarboxylase, at 220,541 to 220,891
_RS18265
HMPREF1058_RS18260: HMPREF1058_RS18260 - pantoate--beta-alanine ligase, at 220,913 to 221,761
_RS18260
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 219.548 kb on + strand, within HMPREF1058_RS18270 at 219.548 kb on + strand, within HMPREF1058_RS18270 at 219.750 kb on + strand, within HMPREF1058_RS18270 at 219.846 kb on + strand, within HMPREF1058_RS18270 at 219.846 kb on + strand, within HMPREF1058_RS18270 at 219.846 kb on + strand, within HMPREF1058_RS18270 at 219.847 kb on - strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.851 kb on - strand, within HMPREF1058_RS18270 at 219.851 kb on - strand, within HMPREF1058_RS18270 at 219.851 kb on - strand, within HMPREF1058_RS18270 at 219.963 kb on + strand, within HMPREF1058_RS18270 at 219.964 kb on - strand, within HMPREF1058_RS18270 at 220.117 kb on + strand, within HMPREF1058_RS18270 at 220.118 kb on - strand, within HMPREF1058_RS18270 at 220.169 kb on + strand, within HMPREF1058_RS18270 at 220.170 kb on - strand, within HMPREF1058_RS18270 at 220.170 kb on - strand, within HMPREF1058_RS18270 at 220.178 kb on - strand, within HMPREF1058_RS18270 at 220.276 kb on + strand at 220.279 kb on + strand at 220.388 kb on + strand at 220.388 kb on + strand at 220.623 kb on + strand, within HMPREF1058_RS18265 at 220.634 kb on - strand, within HMPREF1058_RS18265 at 220.656 kb on - strand, within HMPREF1058_RS18265 at 220.687 kb on + strand, within HMPREF1058_RS18265 at 220.688 kb on - strand, within HMPREF1058_RS18265 at 220.711 kb on + strand, within HMPREF1058_RS18265 at 220.714 kb on + strand, within HMPREF1058_RS18265 at 220.714 kb on + strand, within HMPREF1058_RS18265 at 220.717 kb on + strand, within HMPREF1058_RS18265 at 220.718 kb on - strand, within HMPREF1058_RS18265 at 220.719 kb on + strand, within HMPREF1058_RS18265 at 220.744 kb on + strand, within HMPREF1058_RS18265 at 220.875 kb on - strand at 220.892 kb on - strand at 220.897 kb on + strand at 220.922 kb on - strand at 220.922 kb on - strand at 220.929 kb on - strand at 220.929 kb on - strand at 221.830 kb on - strand at 221.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 219,548 + HMPREF1058_RS18270 0.57 -0.3 219,548 + HMPREF1058_RS18270 0.57 -0.0 219,750 + HMPREF1058_RS18270 0.67 -1.0 219,846 + HMPREF1058_RS18270 0.72 -0.5 219,846 + HMPREF1058_RS18270 0.72 -1.2 219,846 + HMPREF1058_RS18270 0.72 -0.5 219,847 - HMPREF1058_RS18270 0.72 -0.9 219,850 + HMPREF1058_RS18270 0.72 +0.7 219,850 + HMPREF1058_RS18270 0.72 +0.6 219,850 + HMPREF1058_RS18270 0.72 +0.9 219,850 + HMPREF1058_RS18270 0.72 -0.1 219,851 - HMPREF1058_RS18270 0.72 -2.3 219,851 - HMPREF1058_RS18270 0.72 +0.3 219,851 - HMPREF1058_RS18270 0.72 -0.4 219,963 + HMPREF1058_RS18270 0.78 -0.9 219,964 - HMPREF1058_RS18270 0.78 -0.4 220,117 + HMPREF1058_RS18270 0.85 -0.8 220,118 - HMPREF1058_RS18270 0.85 +1.1 220,169 + HMPREF1058_RS18270 0.88 -0.3 220,170 - HMPREF1058_RS18270 0.88 +0.5 220,170 - HMPREF1058_RS18270 0.88 -1.1 220,178 - HMPREF1058_RS18270 0.88 -0.3 220,276 + -0.6 220,279 + -1.1 220,388 + -0.3 220,388 + -1.0 220,623 + HMPREF1058_RS18265 0.23 -2.4 220,634 - HMPREF1058_RS18265 0.26 -2.7 220,656 - HMPREF1058_RS18265 0.33 -1.4 220,687 + HMPREF1058_RS18265 0.42 -0.7 220,688 - HMPREF1058_RS18265 0.42 -2.5 220,711 + HMPREF1058_RS18265 0.48 -1.5 220,714 + HMPREF1058_RS18265 0.49 -3.2 220,714 + HMPREF1058_RS18265 0.49 -2.2 220,717 + HMPREF1058_RS18265 0.50 -2.8 220,718 - HMPREF1058_RS18265 0.50 +0.0 220,719 + HMPREF1058_RS18265 0.51 -1.0 220,744 + HMPREF1058_RS18265 0.58 -1.6 220,875 - -3.4 220,892 - -2.8 220,897 + -1.2 220,922 - -0.7 220,922 - -1.1 220,929 - -0.6 220,929 - -0.7 221,830 - +0.0 221,850 + -0.3
Or see this region's nucleotide sequence