Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17970

Experiment: Sucrose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS20410 and HMPREF1058_RS17975 are separated by 148 nucleotidesHMPREF1058_RS17975 and HMPREF1058_RS17970 are separated by 14 nucleotidesHMPREF1058_RS17970 and HMPREF1058_RS17965 are separated by 11 nucleotidesHMPREF1058_RS17965 and HMPREF1058_RS17960 overlap by 4 nucleotides HMPREF1058_RS20410: HMPREF1058_RS20410 - hypothetical protein, at 288,443 to 288,675 _RS20410 HMPREF1058_RS17975: HMPREF1058_RS17975 - ATP-dependent dethiobiotin synthetase BioD, at 288,824 to 289,468 _RS17975 HMPREF1058_RS17970: HMPREF1058_RS17970 - malonyl-ACP O-methyltransferase BioC, at 289,483 to 290,238 _RS17970 HMPREF1058_RS17965: HMPREF1058_RS17965 - DUF452 family protein, at 290,250 to 290,903 _RS17965 HMPREF1058_RS17960: HMPREF1058_RS17960 - 8-amino-7-oxononanoate synthase, at 290,900 to 292,051 _RS17960 Position (kb) 289 290 291Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 288.490 kb on + strand, within HMPREF1058_RS20410at 288.490 kb on + strand, within HMPREF1058_RS20410at 288.491 kb on - strand, within HMPREF1058_RS20410at 288.493 kb on + strand, within HMPREF1058_RS20410at 288.520 kb on - strand, within HMPREF1058_RS20410at 288.624 kb on + strand, within HMPREF1058_RS20410at 288.625 kb on - strand, within HMPREF1058_RS20410at 288.652 kb on + strandat 288.652 kb on + strandat 288.652 kb on + strandat 288.673 kb on + strandat 288.719 kb on + strandat 288.719 kb on + strandat 288.721 kb on + strandat 288.722 kb on - strandat 288.726 kb on + strandat 288.727 kb on - strandat 288.744 kb on + strandat 288.745 kb on - strandat 288.773 kb on + strandat 288.836 kb on + strandat 288.875 kb on - strandat 288.887 kb on - strandat 288.899 kb on - strand, within HMPREF1058_RS17975at 288.899 kb on - strand, within HMPREF1058_RS17975at 288.942 kb on + strand, within HMPREF1058_RS17975at 288.942 kb on + strand, within HMPREF1058_RS17975at 288.951 kb on + strand, within HMPREF1058_RS17975at 288.952 kb on + strand, within HMPREF1058_RS17975at 288.977 kb on + strand, within HMPREF1058_RS17975at 288.978 kb on - strand, within HMPREF1058_RS17975at 289.000 kb on + strand, within HMPREF1058_RS17975at 289.009 kb on + strand, within HMPREF1058_RS17975at 289.009 kb on + strand, within HMPREF1058_RS17975at 289.065 kb on + strand, within HMPREF1058_RS17975at 289.070 kb on + strand, within HMPREF1058_RS17975at 289.071 kb on - strand, within HMPREF1058_RS17975at 289.081 kb on + strand, within HMPREF1058_RS17975at 289.122 kb on - strand, within HMPREF1058_RS17975at 289.138 kb on - strand, within HMPREF1058_RS17975at 289.278 kb on + strand, within HMPREF1058_RS17975at 289.279 kb on - strand, within HMPREF1058_RS17975at 289.363 kb on + strand, within HMPREF1058_RS17975at 289.367 kb on - strand, within HMPREF1058_RS17975at 289.454 kb on + strandat 289.507 kb on - strandat 289.508 kb on + strandat 289.509 kb on - strandat 289.512 kb on + strandat 289.512 kb on + strandat 289.709 kb on + strand, within HMPREF1058_RS17970at 289.710 kb on - strand, within HMPREF1058_RS17970at 289.846 kb on - strand, within HMPREF1058_RS17970at 289.848 kb on + strand, within HMPREF1058_RS17970at 289.849 kb on - strand, within HMPREF1058_RS17970at 289.904 kb on - strand, within HMPREF1058_RS17970at 290.017 kb on - strand, within HMPREF1058_RS17970at 290.123 kb on + strand, within HMPREF1058_RS17970at 290.124 kb on - strand, within HMPREF1058_RS17970at 290.132 kb on - strand, within HMPREF1058_RS17970at 290.155 kb on + strand, within HMPREF1058_RS17970at 290.230 kb on - strandat 290.251 kb on + strandat 290.306 kb on + strandat 290.307 kb on - strandat 290.383 kb on - strand, within HMPREF1058_RS17965at 290.657 kb on + strand, within HMPREF1058_RS17965at 290.924 kb on + strandat 291.012 kb on + strandat 291.095 kb on - strand, within HMPREF1058_RS17960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
remove
288,490 + HMPREF1058_RS20410 0.20 +0.4
288,490 + HMPREF1058_RS20410 0.20 +0.0
288,491 - HMPREF1058_RS20410 0.21 -2.7
288,493 + HMPREF1058_RS20410 0.21 -1.2
288,520 - HMPREF1058_RS20410 0.33 +0.2
288,624 + HMPREF1058_RS20410 0.78 +0.5
288,625 - HMPREF1058_RS20410 0.78 -1.2
288,652 + -1.9
288,652 + +1.0
288,652 + +0.3
288,673 + -0.2
288,719 + -1.3
288,719 + -1.3
288,721 + +1.5
288,722 - +0.0
288,726 + +0.3
288,727 - -2.4
288,744 + -0.6
288,745 - +1.3
288,773 + -2.1
288,836 + -3.2
288,875 - -2.7
288,887 - -2.9
288,899 - HMPREF1058_RS17975 0.12 -1.2
288,899 - HMPREF1058_RS17975 0.12 -1.7
288,942 + HMPREF1058_RS17975 0.18 -4.2
288,942 + HMPREF1058_RS17975 0.18 -3.6
288,951 + HMPREF1058_RS17975 0.20 -3.0
288,952 + HMPREF1058_RS17975 0.20 -4.3
288,977 + HMPREF1058_RS17975 0.24 -3.5
288,978 - HMPREF1058_RS17975 0.24 -3.7
289,000 + HMPREF1058_RS17975 0.27 -2.2
289,009 + HMPREF1058_RS17975 0.29 -5.8
289,009 + HMPREF1058_RS17975 0.29 -2.1
289,065 + HMPREF1058_RS17975 0.37 -1.0
289,070 + HMPREF1058_RS17975 0.38 -4.2
289,071 - HMPREF1058_RS17975 0.38 -4.1
289,081 + HMPREF1058_RS17975 0.40 -2.5
289,122 - HMPREF1058_RS17975 0.46 -3.7
289,138 - HMPREF1058_RS17975 0.49 +0.0
289,278 + HMPREF1058_RS17975 0.70 -3.2
289,279 - HMPREF1058_RS17975 0.71 -3.3
289,363 + HMPREF1058_RS17975 0.84 +0.0
289,367 - HMPREF1058_RS17975 0.84 -3.7
289,454 + -2.7
289,507 - -2.9
289,508 + -3.2
289,509 - -2.8
289,512 + -3.7
289,512 + -3.3
289,709 + HMPREF1058_RS17970 0.30 -3.9
289,710 - HMPREF1058_RS17970 0.30 +0.6
289,846 - HMPREF1058_RS17970 0.48 -2.8
289,848 + HMPREF1058_RS17970 0.48 -5.0
289,849 - HMPREF1058_RS17970 0.48 -2.7
289,904 - HMPREF1058_RS17970 0.56 -3.0
290,017 - HMPREF1058_RS17970 0.71 -0.7
290,123 + HMPREF1058_RS17970 0.85 -2.8
290,124 - HMPREF1058_RS17970 0.85 -1.2
290,132 - HMPREF1058_RS17970 0.86 -2.4
290,155 + HMPREF1058_RS17970 0.89 -2.3
290,230 - -0.7
290,251 + -1.1
290,306 + -1.2
290,307 - -0.7
290,383 - HMPREF1058_RS17965 0.20 -2.8
290,657 + HMPREF1058_RS17965 0.62 -3.9
290,924 + -2.6
291,012 + -3.8
291,095 - HMPREF1058_RS17960 0.17 -3.1

Or see this region's nucleotide sequence