Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17970 and HMPREF1058_RS17965 are separated by 11 nucleotides HMPREF1058_RS17965 and HMPREF1058_RS17960 overlap by 4 nucleotides HMPREF1058_RS17960 and HMPREF1058_RS17955 are separated by 27 nucleotides
HMPREF1058_RS17970: HMPREF1058_RS17970 - malonyl-ACP O-methyltransferase BioC, at 289,483 to 290,238
_RS17970
HMPREF1058_RS17965: HMPREF1058_RS17965 - DUF452 family protein, at 290,250 to 290,903
_RS17965
HMPREF1058_RS17960: HMPREF1058_RS17960 - 8-amino-7-oxononanoate synthase, at 290,900 to 292,051
_RS17960
HMPREF1058_RS17955: HMPREF1058_RS17955 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 292,079 to 293,350
_RS17955
Position (kb) 290
291
292
293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 289.904 kb on - strand, within HMPREF1058_RS17970 at 290.017 kb on - strand, within HMPREF1058_RS17970 at 290.123 kb on + strand, within HMPREF1058_RS17970 at 290.124 kb on - strand, within HMPREF1058_RS17970 at 290.132 kb on - strand, within HMPREF1058_RS17970 at 290.155 kb on + strand, within HMPREF1058_RS17970 at 290.230 kb on - strand at 290.251 kb on + strand at 290.306 kb on + strand at 290.307 kb on - strand at 290.383 kb on - strand, within HMPREF1058_RS17965 at 290.657 kb on + strand, within HMPREF1058_RS17965 at 290.924 kb on + strand at 291.012 kb on + strand at 291.095 kb on - strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.435 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.444 kb on - strand, within HMPREF1058_RS17960 at 291.444 kb on - strand, within HMPREF1058_RS17960 at 291.454 kb on - strand, within HMPREF1058_RS17960 at 291.530 kb on - strand, within HMPREF1058_RS17960 at 291.533 kb on + strand, within HMPREF1058_RS17960 at 291.533 kb on + strand, within HMPREF1058_RS17960 at 291.534 kb on - strand, within HMPREF1058_RS17960 at 291.539 kb on - strand, within HMPREF1058_RS17960 at 291.731 kb on - strand, within HMPREF1058_RS17960 at 291.793 kb on - strand, within HMPREF1058_RS17960 at 291.793 kb on - strand, within HMPREF1058_RS17960 at 291.796 kb on + strand, within HMPREF1058_RS17960 at 291.882 kb on - strand, within HMPREF1058_RS17960 at 292.019 kb on + strand at 292.089 kb on - strand at 292.100 kb on + strand at 292.100 kb on + strand at 292.101 kb on - strand at 292.101 kb on - strand at 292.106 kb on + strand at 292.166 kb on - strand at 292.167 kb on + strand at 292.369 kb on + strand, within HMPREF1058_RS17955 at 292.370 kb on - strand, within HMPREF1058_RS17955 at 292.435 kb on + strand, within HMPREF1058_RS17955 at 292.521 kb on + strand, within HMPREF1058_RS17955 at 292.540 kb on + strand, within HMPREF1058_RS17955 at 292.544 kb on + strand, within HMPREF1058_RS17955 at 292.668 kb on - strand, within HMPREF1058_RS17955 at 292.718 kb on + strand, within HMPREF1058_RS17955 at 292.724 kb on - strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.787 kb on + strand, within HMPREF1058_RS17955 at 292.788 kb on - strand, within HMPREF1058_RS17955 at 292.943 kb on - strand, within HMPREF1058_RS17955 at 292.986 kb on + strand, within HMPREF1058_RS17955
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 289,904 - HMPREF1058_RS17970 0.56 -3.0 290,017 - HMPREF1058_RS17970 0.71 -0.7 290,123 + HMPREF1058_RS17970 0.85 -2.8 290,124 - HMPREF1058_RS17970 0.85 -1.2 290,132 - HMPREF1058_RS17970 0.86 -2.4 290,155 + HMPREF1058_RS17970 0.89 -2.3 290,230 - -0.7 290,251 + -1.1 290,306 + -1.2 290,307 - -0.7 290,383 - HMPREF1058_RS17965 0.20 -2.8 290,657 + HMPREF1058_RS17965 0.62 -3.9 290,924 + -2.6 291,012 + -3.8 291,095 - HMPREF1058_RS17960 0.17 -3.1 291,303 + HMPREF1058_RS17960 0.35 -4.2 291,303 + HMPREF1058_RS17960 0.35 -2.9 291,303 + HMPREF1058_RS17960 0.35 -4.1 291,435 + HMPREF1058_RS17960 0.46 +0.0 291,443 + HMPREF1058_RS17960 0.47 -1.6 291,443 + HMPREF1058_RS17960 0.47 -3.3 291,443 + HMPREF1058_RS17960 0.47 -2.8 291,444 - HMPREF1058_RS17960 0.47 +1.6 291,444 - HMPREF1058_RS17960 0.47 -1.0 291,454 - HMPREF1058_RS17960 0.48 +1.6 291,530 - HMPREF1058_RS17960 0.55 -2.9 291,533 + HMPREF1058_RS17960 0.55 -3.3 291,533 + HMPREF1058_RS17960 0.55 +0.6 291,534 - HMPREF1058_RS17960 0.55 -3.0 291,539 - HMPREF1058_RS17960 0.55 -0.7 291,731 - HMPREF1058_RS17960 0.72 -3.9 291,793 - HMPREF1058_RS17960 0.78 -3.7 291,793 - HMPREF1058_RS17960 0.78 -1.9 291,796 + HMPREF1058_RS17960 0.78 -1.6 291,882 - HMPREF1058_RS17960 0.85 -1.6 292,019 + -2.2 292,089 - +0.0 292,100 + -2.8 292,100 + -1.2 292,101 - -3.5 292,101 - -1.9 292,106 + -3.3 292,166 - -1.6 292,167 + -2.9 292,369 + HMPREF1058_RS17955 0.23 -2.6 292,370 - HMPREF1058_RS17955 0.23 -3.2 292,435 + HMPREF1058_RS17955 0.28 -2.1 292,521 + HMPREF1058_RS17955 0.35 -3.0 292,540 + HMPREF1058_RS17955 0.36 -0.4 292,544 + HMPREF1058_RS17955 0.37 -1.9 292,668 - HMPREF1058_RS17955 0.46 -3.4 292,718 + HMPREF1058_RS17955 0.50 -2.1 292,724 - HMPREF1058_RS17955 0.51 -3.0 292,787 + HMPREF1058_RS17955 0.56 -3.1 292,787 + HMPREF1058_RS17955 0.56 -2.0 292,787 + HMPREF1058_RS17955 0.56 -2.9 292,787 + HMPREF1058_RS17955 0.56 -3.4 292,788 - HMPREF1058_RS17955 0.56 +0.9 292,943 - HMPREF1058_RS17955 0.68 -3.0 292,986 + HMPREF1058_RS17955 0.71 -4.2
Or see this region's nucleotide sequence