Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17885

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17890 and HMPREF1058_RS17885 are separated by 143 nucleotidesHMPREF1058_RS17885 and HMPREF1058_RS17880 are separated by 21 nucleotidesHMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides HMPREF1058_RS17890: HMPREF1058_RS17890 - DUF4301 family protein, at 306,397 to 307,914 _RS17890 HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271 _RS17885 HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646 _RS17880 HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153 _RS17875 Position (kb) 308 309 310 311Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 307.059 kb on + strand, within HMPREF1058_RS17890at 307.059 kb on + strand, within HMPREF1058_RS17890at 307.060 kb on - strand, within HMPREF1058_RS17890at 307.060 kb on - strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.080 kb on + strand, within HMPREF1058_RS17890at 307.232 kb on + strand, within HMPREF1058_RS17890at 307.233 kb on - strand, within HMPREF1058_RS17890at 307.233 kb on - strand, within HMPREF1058_RS17890at 307.355 kb on + strand, within HMPREF1058_RS17890at 307.492 kb on - strand, within HMPREF1058_RS17890at 307.566 kb on - strand, within HMPREF1058_RS17890at 307.578 kb on + strand, within HMPREF1058_RS17890at 307.578 kb on + strand, within HMPREF1058_RS17890at 307.584 kb on + strand, within HMPREF1058_RS17890at 307.584 kb on + strand, within HMPREF1058_RS17890at 307.628 kb on + strand, within HMPREF1058_RS17890at 307.723 kb on - strand, within HMPREF1058_RS17890at 307.724 kb on + strand, within HMPREF1058_RS17890at 307.724 kb on + strand, within HMPREF1058_RS17890at 307.724 kb on + strand, within HMPREF1058_RS17890at 307.725 kb on - strand, within HMPREF1058_RS17890at 307.914 kb on + strandat 307.938 kb on - strandat 307.968 kb on + strandat 307.968 kb on + strandat 308.015 kb on - strandat 308.113 kb on - strandat 308.176 kb on + strandat 308.341 kb on + strand, within HMPREF1058_RS17885at 308.342 kb on - strand, within HMPREF1058_RS17885at 308.423 kb on - strand, within HMPREF1058_RS17885at 308.444 kb on - strand, within HMPREF1058_RS17885at 308.499 kb on - strand, within HMPREF1058_RS17885at 308.542 kb on + strand, within HMPREF1058_RS17885at 308.542 kb on + strand, within HMPREF1058_RS17885at 308.560 kb on + strand, within HMPREF1058_RS17885at 308.578 kb on + strand, within HMPREF1058_RS17885at 308.579 kb on - strand, within HMPREF1058_RS17885at 308.596 kb on - strand, within HMPREF1058_RS17885at 308.629 kb on + strand, within HMPREF1058_RS17885at 308.631 kb on + strand, within HMPREF1058_RS17885at 308.631 kb on + strand, within HMPREF1058_RS17885at 308.632 kb on - strand, within HMPREF1058_RS17885at 308.686 kb on + strand, within HMPREF1058_RS17885at 308.686 kb on + strand, within HMPREF1058_RS17885at 308.687 kb on - strand, within HMPREF1058_RS17885at 308.688 kb on + strand, within HMPREF1058_RS17885at 308.688 kb on + strand, within HMPREF1058_RS17885at 308.689 kb on - strand, within HMPREF1058_RS17885at 308.689 kb on - strand, within HMPREF1058_RS17885at 308.696 kb on + strand, within HMPREF1058_RS17885at 308.698 kb on + strand, within HMPREF1058_RS17885at 308.698 kb on + strand, within HMPREF1058_RS17885at 308.699 kb on - strand, within HMPREF1058_RS17885at 308.739 kb on + strand, within HMPREF1058_RS17885at 308.740 kb on - strand, within HMPREF1058_RS17885at 308.740 kb on - strand, within HMPREF1058_RS17885at 308.877 kb on + strand, within HMPREF1058_RS17885at 308.947 kb on + strand, within HMPREF1058_RS17885at 308.947 kb on + strand, within HMPREF1058_RS17885at 308.948 kb on - strand, within HMPREF1058_RS17885at 308.948 kb on - strand, within HMPREF1058_RS17885at 308.967 kb on - strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.970 kb on + strand, within HMPREF1058_RS17885at 308.971 kb on - strand, within HMPREF1058_RS17885at 308.971 kb on - strand, within HMPREF1058_RS17885at 308.971 kb on - strand, within HMPREF1058_RS17885at 308.971 kb on - strand, within HMPREF1058_RS17885at 308.972 kb on + strand, within HMPREF1058_RS17885at 309.041 kb on + strand, within HMPREF1058_RS17885at 309.049 kb on + strand, within HMPREF1058_RS17885at 309.049 kb on + strand, within HMPREF1058_RS17885at 309.079 kb on + strand, within HMPREF1058_RS17885at 309.269 kb on - strand, within HMPREF1058_RS17885at 309.297 kb on + strand, within HMPREF1058_RS17885at 309.298 kb on - strand, within HMPREF1058_RS17885at 309.535 kb on + strand, within HMPREF1058_RS17885at 309.536 kb on - strand, within HMPREF1058_RS17885at 309.646 kb on - strand, within HMPREF1058_RS17885at 309.758 kb on + strand, within HMPREF1058_RS17885at 309.885 kb on - strand, within HMPREF1058_RS17885at 309.890 kb on + strand, within HMPREF1058_RS17885at 309.891 kb on - strand, within HMPREF1058_RS17885at 309.894 kb on + strand, within HMPREF1058_RS17885at 309.895 kb on - strand, within HMPREF1058_RS17885at 309.907 kb on + strand, within HMPREF1058_RS17885at 309.908 kb on - strand, within HMPREF1058_RS17885at 309.962 kb on + strand, within HMPREF1058_RS17885at 310.078 kb on + strandat 310.078 kb on + strandat 310.094 kb on + strandat 310.094 kb on + strandat 310.192 kb on + strandat 310.199 kb on + strandat 310.223 kb on - strandat 310.286 kb on + strandat 310.286 kb on + strandat 310.325 kb on + strandat 310.329 kb on + strand, within HMPREF1058_RS17880at 310.432 kb on + strand, within HMPREF1058_RS17880at 310.478 kb on - strand, within HMPREF1058_RS17880at 310.547 kb on + strand, within HMPREF1058_RS17880at 310.709 kb on + strandat 310.738 kb on + strandat 310.738 kb on + strandat 310.738 kb on + strandat 310.765 kb on + strandat 310.766 kb on - strandat 310.777 kb on + strandat 310.851 kb on - strand, within HMPREF1058_RS17875at 310.851 kb on - strand, within HMPREF1058_RS17875at 311.026 kb on - strand, within HMPREF1058_RS17875at 311.026 kb on - strand, within HMPREF1058_RS17875at 311.028 kb on - strand, within HMPREF1058_RS17875at 311.114 kb on - strandat 311.167 kb on + strandat 311.167 kb on + strandat 311.181 kb on + strandat 311.211 kb on - strandat 311.211 kb on - strandat 311.224 kb on - strandat 311.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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307,059 + HMPREF1058_RS17890 0.44 -0.6
307,059 + HMPREF1058_RS17890 0.44 -0.9
307,060 - HMPREF1058_RS17890 0.44 -0.2
307,060 - HMPREF1058_RS17890 0.44 -0.1
307,063 + HMPREF1058_RS17890 0.44 -0.8
307,063 + HMPREF1058_RS17890 0.44 +0.5
307,063 + HMPREF1058_RS17890 0.44 +0.6
307,080 + HMPREF1058_RS17890 0.45 +0.2
307,232 + HMPREF1058_RS17890 0.55 +1.4
307,233 - HMPREF1058_RS17890 0.55 -0.7
307,233 - HMPREF1058_RS17890 0.55 -0.4
307,355 + HMPREF1058_RS17890 0.63 -0.1
307,492 - HMPREF1058_RS17890 0.72 -0.6
307,566 - HMPREF1058_RS17890 0.77 -0.6
307,578 + HMPREF1058_RS17890 0.78 +0.7
307,578 + HMPREF1058_RS17890 0.78 +0.1
307,584 + HMPREF1058_RS17890 0.78 +0.5
307,584 + HMPREF1058_RS17890 0.78 +0.2
307,628 + HMPREF1058_RS17890 0.81 +0.1
307,723 - HMPREF1058_RS17890 0.87 -1.7
307,724 + HMPREF1058_RS17890 0.87 +0.2
307,724 + HMPREF1058_RS17890 0.87 -1.5
307,724 + HMPREF1058_RS17890 0.87 -0.0
307,725 - HMPREF1058_RS17890 0.87 -0.0
307,914 + +1.1
307,938 - +0.4
307,968 + +1.1
307,968 + +0.5
308,015 - -1.4
308,113 - -3.5
308,176 + -5.1
308,341 + HMPREF1058_RS17885 0.13 -0.4
308,342 - HMPREF1058_RS17885 0.13 -3.8
308,423 - HMPREF1058_RS17885 0.16 -2.5
308,444 - HMPREF1058_RS17885 0.17 -2.6
308,499 - HMPREF1058_RS17885 0.20 -0.7
308,542 + HMPREF1058_RS17885 0.22 -4.7
308,542 + HMPREF1058_RS17885 0.22 -3.4
308,560 + HMPREF1058_RS17885 0.23 -1.9
308,578 + HMPREF1058_RS17885 0.23 -0.7
308,579 - HMPREF1058_RS17885 0.24 -3.0
308,596 - HMPREF1058_RS17885 0.24 -2.9
308,629 + HMPREF1058_RS17885 0.26 -5.1
308,631 + HMPREF1058_RS17885 0.26 -4.0
308,631 + HMPREF1058_RS17885 0.26 -4.1
308,632 - HMPREF1058_RS17885 0.26 -1.9
308,686 + HMPREF1058_RS17885 0.28 -5.0
308,686 + HMPREF1058_RS17885 0.28 -4.8
308,687 - HMPREF1058_RS17885 0.28 -3.8
308,688 + HMPREF1058_RS17885 0.28 -2.9
308,688 + HMPREF1058_RS17885 0.28 -4.3
308,689 - HMPREF1058_RS17885 0.29 -1.2
308,689 - HMPREF1058_RS17885 0.29 -3.2
308,696 + HMPREF1058_RS17885 0.29 -2.8
308,698 + HMPREF1058_RS17885 0.29 -4.4
308,698 + HMPREF1058_RS17885 0.29 -0.4
308,699 - HMPREF1058_RS17885 0.29 +0.0
308,739 + HMPREF1058_RS17885 0.31 -4.3
308,740 - HMPREF1058_RS17885 0.31 -4.7
308,740 - HMPREF1058_RS17885 0.31 -2.7
308,877 + HMPREF1058_RS17885 0.37 -3.7
308,947 + HMPREF1058_RS17885 0.40 -3.9
308,947 + HMPREF1058_RS17885 0.40 -4.2
308,948 - HMPREF1058_RS17885 0.40 -0.4
308,948 - HMPREF1058_RS17885 0.40 -3.1
308,967 - HMPREF1058_RS17885 0.41 -1.4
308,970 + HMPREF1058_RS17885 0.41 -3.4
308,970 + HMPREF1058_RS17885 0.41 -2.2
308,970 + HMPREF1058_RS17885 0.41 -3.2
308,970 + HMPREF1058_RS17885 0.41 -4.2
308,970 + HMPREF1058_RS17885 0.41 -3.8
308,970 + HMPREF1058_RS17885 0.41 -4.3
308,970 + HMPREF1058_RS17885 0.41 -1.7
308,970 + HMPREF1058_RS17885 0.41 -3.9
308,970 + HMPREF1058_RS17885 0.41 -2.1
308,971 - HMPREF1058_RS17885 0.41 -4.6
308,971 - HMPREF1058_RS17885 0.41 -0.7
308,971 - HMPREF1058_RS17885 0.41 -1.0
308,971 - HMPREF1058_RS17885 0.41 -2.8
308,972 + HMPREF1058_RS17885 0.41 -5.2
309,041 + HMPREF1058_RS17885 0.44 -2.8
309,049 + HMPREF1058_RS17885 0.45 -2.6
309,049 + HMPREF1058_RS17885 0.45 -5.3
309,079 + HMPREF1058_RS17885 0.46 -2.0
309,269 - HMPREF1058_RS17885 0.55 -2.9
309,297 + HMPREF1058_RS17885 0.56 -5.3
309,298 - HMPREF1058_RS17885 0.56 -3.7
309,535 + HMPREF1058_RS17885 0.67 -5.3
309,536 - HMPREF1058_RS17885 0.67 -4.7
309,646 - HMPREF1058_RS17885 0.72 -3.0
309,758 + HMPREF1058_RS17885 0.77 -6.4
309,885 - HMPREF1058_RS17885 0.83 -2.1
309,890 + HMPREF1058_RS17885 0.83 -3.8
309,891 - HMPREF1058_RS17885 0.83 -1.7
309,894 + HMPREF1058_RS17885 0.83 -5.1
309,895 - HMPREF1058_RS17885 0.83 -0.7
309,907 + HMPREF1058_RS17885 0.84 -5.2
309,908 - HMPREF1058_RS17885 0.84 -1.1
309,962 + HMPREF1058_RS17885 0.86 -3.2
310,078 + -4.6
310,078 + -3.4
310,094 + -2.6
310,094 + -4.2
310,192 + -1.9
310,199 + -5.4
310,223 - -4.6
310,286 + -1.6
310,286 + -0.4
310,325 + -0.4
310,329 + HMPREF1058_RS17880 0.10 -2.5
310,432 + HMPREF1058_RS17880 0.39 +0.2
310,478 - HMPREF1058_RS17880 0.52 -2.1
310,547 + HMPREF1058_RS17880 0.72 -0.8
310,709 + +0.9
310,738 + -0.3
310,738 + +0.5
310,738 + +0.2
310,765 + -2.2
310,766 - -0.4
310,777 + -1.6
310,851 - HMPREF1058_RS17875 0.27 +0.6
310,851 - HMPREF1058_RS17875 0.27 -0.4
311,026 - HMPREF1058_RS17875 0.69 +0.5
311,026 - HMPREF1058_RS17875 0.69 -2.3
311,028 - HMPREF1058_RS17875 0.70 +1.0
311,114 - +0.5
311,167 + -0.6
311,167 + +0.9
311,181 + -0.6
311,211 - +0.0
311,211 - +0.4
311,224 - +0.9
311,262 + -0.7

Or see this region's nucleotide sequence