Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17890 and HMPREF1058_RS17885 are separated by 143 nucleotides HMPREF1058_RS17885 and HMPREF1058_RS17880 are separated by 21 nucleotides HMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides
HMPREF1058_RS17890: HMPREF1058_RS17890 - DUF4301 family protein, at 306,397 to 307,914
_RS17890
HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271
_RS17885
HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646
_RS17880
HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153
_RS17875
Position (kb) 308
309
310
311 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 307.059 kb on + strand, within HMPREF1058_RS17890 at 307.059 kb on + strand, within HMPREF1058_RS17890 at 307.060 kb on - strand, within HMPREF1058_RS17890 at 307.060 kb on - strand, within HMPREF1058_RS17890 at 307.063 kb on + strand, within HMPREF1058_RS17890 at 307.063 kb on + strand, within HMPREF1058_RS17890 at 307.063 kb on + strand, within HMPREF1058_RS17890 at 307.080 kb on + strand, within HMPREF1058_RS17890 at 307.232 kb on + strand, within HMPREF1058_RS17890 at 307.233 kb on - strand, within HMPREF1058_RS17890 at 307.233 kb on - strand, within HMPREF1058_RS17890 at 307.355 kb on + strand, within HMPREF1058_RS17890 at 307.492 kb on - strand, within HMPREF1058_RS17890 at 307.566 kb on - strand, within HMPREF1058_RS17890 at 307.578 kb on + strand, within HMPREF1058_RS17890 at 307.578 kb on + strand, within HMPREF1058_RS17890 at 307.584 kb on + strand, within HMPREF1058_RS17890 at 307.584 kb on + strand, within HMPREF1058_RS17890 at 307.628 kb on + strand, within HMPREF1058_RS17890 at 307.723 kb on - strand, within HMPREF1058_RS17890 at 307.724 kb on + strand, within HMPREF1058_RS17890 at 307.724 kb on + strand, within HMPREF1058_RS17890 at 307.724 kb on + strand, within HMPREF1058_RS17890 at 307.725 kb on - strand, within HMPREF1058_RS17890 at 307.914 kb on + strand at 307.938 kb on - strand at 307.968 kb on + strand at 307.968 kb on + strand at 308.015 kb on - strand at 308.113 kb on - strand at 308.176 kb on + strand at 308.341 kb on + strand, within HMPREF1058_RS17885 at 308.342 kb on - strand, within HMPREF1058_RS17885 at 308.423 kb on - strand, within HMPREF1058_RS17885 at 308.444 kb on - strand, within HMPREF1058_RS17885 at 308.499 kb on - strand, within HMPREF1058_RS17885 at 308.542 kb on + strand, within HMPREF1058_RS17885 at 308.542 kb on + strand, within HMPREF1058_RS17885 at 308.560 kb on + strand, within HMPREF1058_RS17885 at 308.578 kb on + strand, within HMPREF1058_RS17885 at 308.579 kb on - strand, within HMPREF1058_RS17885 at 308.596 kb on - strand, within HMPREF1058_RS17885 at 308.629 kb on + strand, within HMPREF1058_RS17885 at 308.631 kb on + strand, within HMPREF1058_RS17885 at 308.631 kb on + strand, within HMPREF1058_RS17885 at 308.632 kb on - strand, within HMPREF1058_RS17885 at 308.686 kb on + strand, within HMPREF1058_RS17885 at 308.686 kb on + strand, within HMPREF1058_RS17885 at 308.687 kb on - strand, within HMPREF1058_RS17885 at 308.688 kb on + strand, within HMPREF1058_RS17885 at 308.688 kb on + strand, within HMPREF1058_RS17885 at 308.689 kb on - strand, within HMPREF1058_RS17885 at 308.689 kb on - strand, within HMPREF1058_RS17885 at 308.696 kb on + strand, within HMPREF1058_RS17885 at 308.698 kb on + strand, within HMPREF1058_RS17885 at 308.698 kb on + strand, within HMPREF1058_RS17885 at 308.699 kb on - strand, within HMPREF1058_RS17885 at 308.739 kb on + strand, within HMPREF1058_RS17885 at 308.740 kb on - strand, within HMPREF1058_RS17885 at 308.740 kb on - strand, within HMPREF1058_RS17885 at 308.877 kb on + strand, within HMPREF1058_RS17885 at 308.947 kb on + strand, within HMPREF1058_RS17885 at 308.947 kb on + strand, within HMPREF1058_RS17885 at 308.948 kb on - strand, within HMPREF1058_RS17885 at 308.948 kb on - strand, within HMPREF1058_RS17885 at 308.967 kb on - strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.972 kb on + strand, within HMPREF1058_RS17885 at 309.041 kb on + strand, within HMPREF1058_RS17885 at 309.049 kb on + strand, within HMPREF1058_RS17885 at 309.049 kb on + strand, within HMPREF1058_RS17885 at 309.079 kb on + strand, within HMPREF1058_RS17885 at 309.269 kb on - strand, within HMPREF1058_RS17885 at 309.297 kb on + strand, within HMPREF1058_RS17885 at 309.298 kb on - strand, within HMPREF1058_RS17885 at 309.535 kb on + strand, within HMPREF1058_RS17885 at 309.536 kb on - strand, within HMPREF1058_RS17885 at 309.646 kb on - strand, within HMPREF1058_RS17885 at 309.758 kb on + strand, within HMPREF1058_RS17885 at 309.885 kb on - strand, within HMPREF1058_RS17885 at 309.890 kb on + strand, within HMPREF1058_RS17885 at 309.891 kb on - strand, within HMPREF1058_RS17885 at 309.894 kb on + strand, within HMPREF1058_RS17885 at 309.895 kb on - strand, within HMPREF1058_RS17885 at 309.907 kb on + strand, within HMPREF1058_RS17885 at 309.908 kb on - strand, within HMPREF1058_RS17885 at 309.962 kb on + strand, within HMPREF1058_RS17885 at 310.078 kb on + strand at 310.078 kb on + strand at 310.094 kb on + strand at 310.094 kb on + strand at 310.192 kb on + strand at 310.199 kb on + strand at 310.223 kb on - strand at 310.286 kb on + strand at 310.286 kb on + strand at 310.325 kb on + strand at 310.329 kb on + strand, within HMPREF1058_RS17880 at 310.432 kb on + strand, within HMPREF1058_RS17880 at 310.478 kb on - strand, within HMPREF1058_RS17880 at 310.547 kb on + strand, within HMPREF1058_RS17880 at 310.709 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.765 kb on + strand at 310.766 kb on - strand at 310.777 kb on + strand at 310.851 kb on - strand, within HMPREF1058_RS17875 at 310.851 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.028 kb on - strand, within HMPREF1058_RS17875 at 311.114 kb on - strand at 311.167 kb on + strand at 311.167 kb on + strand at 311.181 kb on + strand at 311.211 kb on - strand at 311.211 kb on - strand at 311.224 kb on - strand at 311.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 307,059 + HMPREF1058_RS17890 0.44 -0.6 307,059 + HMPREF1058_RS17890 0.44 -0.9 307,060 - HMPREF1058_RS17890 0.44 -0.2 307,060 - HMPREF1058_RS17890 0.44 -0.1 307,063 + HMPREF1058_RS17890 0.44 -0.8 307,063 + HMPREF1058_RS17890 0.44 +0.5 307,063 + HMPREF1058_RS17890 0.44 +0.6 307,080 + HMPREF1058_RS17890 0.45 +0.2 307,232 + HMPREF1058_RS17890 0.55 +1.4 307,233 - HMPREF1058_RS17890 0.55 -0.7 307,233 - HMPREF1058_RS17890 0.55 -0.4 307,355 + HMPREF1058_RS17890 0.63 -0.1 307,492 - HMPREF1058_RS17890 0.72 -0.6 307,566 - HMPREF1058_RS17890 0.77 -0.6 307,578 + HMPREF1058_RS17890 0.78 +0.7 307,578 + HMPREF1058_RS17890 0.78 +0.1 307,584 + HMPREF1058_RS17890 0.78 +0.5 307,584 + HMPREF1058_RS17890 0.78 +0.2 307,628 + HMPREF1058_RS17890 0.81 +0.1 307,723 - HMPREF1058_RS17890 0.87 -1.7 307,724 + HMPREF1058_RS17890 0.87 +0.2 307,724 + HMPREF1058_RS17890 0.87 -1.5 307,724 + HMPREF1058_RS17890 0.87 -0.0 307,725 - HMPREF1058_RS17890 0.87 -0.0 307,914 + +1.1 307,938 - +0.4 307,968 + +1.1 307,968 + +0.5 308,015 - -1.4 308,113 - -3.5 308,176 + -5.1 308,341 + HMPREF1058_RS17885 0.13 -0.4 308,342 - HMPREF1058_RS17885 0.13 -3.8 308,423 - HMPREF1058_RS17885 0.16 -2.5 308,444 - HMPREF1058_RS17885 0.17 -2.6 308,499 - HMPREF1058_RS17885 0.20 -0.7 308,542 + HMPREF1058_RS17885 0.22 -4.7 308,542 + HMPREF1058_RS17885 0.22 -3.4 308,560 + HMPREF1058_RS17885 0.23 -1.9 308,578 + HMPREF1058_RS17885 0.23 -0.7 308,579 - HMPREF1058_RS17885 0.24 -3.0 308,596 - HMPREF1058_RS17885 0.24 -2.9 308,629 + HMPREF1058_RS17885 0.26 -5.1 308,631 + HMPREF1058_RS17885 0.26 -4.0 308,631 + HMPREF1058_RS17885 0.26 -4.1 308,632 - HMPREF1058_RS17885 0.26 -1.9 308,686 + HMPREF1058_RS17885 0.28 -5.0 308,686 + HMPREF1058_RS17885 0.28 -4.8 308,687 - HMPREF1058_RS17885 0.28 -3.8 308,688 + HMPREF1058_RS17885 0.28 -2.9 308,688 + HMPREF1058_RS17885 0.28 -4.3 308,689 - HMPREF1058_RS17885 0.29 -1.2 308,689 - HMPREF1058_RS17885 0.29 -3.2 308,696 + HMPREF1058_RS17885 0.29 -2.8 308,698 + HMPREF1058_RS17885 0.29 -4.4 308,698 + HMPREF1058_RS17885 0.29 -0.4 308,699 - HMPREF1058_RS17885 0.29 +0.0 308,739 + HMPREF1058_RS17885 0.31 -4.3 308,740 - HMPREF1058_RS17885 0.31 -4.7 308,740 - HMPREF1058_RS17885 0.31 -2.7 308,877 + HMPREF1058_RS17885 0.37 -3.7 308,947 + HMPREF1058_RS17885 0.40 -3.9 308,947 + HMPREF1058_RS17885 0.40 -4.2 308,948 - HMPREF1058_RS17885 0.40 -0.4 308,948 - HMPREF1058_RS17885 0.40 -3.1 308,967 - HMPREF1058_RS17885 0.41 -1.4 308,970 + HMPREF1058_RS17885 0.41 -3.4 308,970 + HMPREF1058_RS17885 0.41 -2.2 308,970 + HMPREF1058_RS17885 0.41 -3.2 308,970 + HMPREF1058_RS17885 0.41 -4.2 308,970 + HMPREF1058_RS17885 0.41 -3.8 308,970 + HMPREF1058_RS17885 0.41 -4.3 308,970 + HMPREF1058_RS17885 0.41 -1.7 308,970 + HMPREF1058_RS17885 0.41 -3.9 308,970 + HMPREF1058_RS17885 0.41 -2.1 308,971 - HMPREF1058_RS17885 0.41 -4.6 308,971 - HMPREF1058_RS17885 0.41 -0.7 308,971 - HMPREF1058_RS17885 0.41 -1.0 308,971 - HMPREF1058_RS17885 0.41 -2.8 308,972 + HMPREF1058_RS17885 0.41 -5.2 309,041 + HMPREF1058_RS17885 0.44 -2.8 309,049 + HMPREF1058_RS17885 0.45 -2.6 309,049 + HMPREF1058_RS17885 0.45 -5.3 309,079 + HMPREF1058_RS17885 0.46 -2.0 309,269 - HMPREF1058_RS17885 0.55 -2.9 309,297 + HMPREF1058_RS17885 0.56 -5.3 309,298 - HMPREF1058_RS17885 0.56 -3.7 309,535 + HMPREF1058_RS17885 0.67 -5.3 309,536 - HMPREF1058_RS17885 0.67 -4.7 309,646 - HMPREF1058_RS17885 0.72 -3.0 309,758 + HMPREF1058_RS17885 0.77 -6.4 309,885 - HMPREF1058_RS17885 0.83 -2.1 309,890 + HMPREF1058_RS17885 0.83 -3.8 309,891 - HMPREF1058_RS17885 0.83 -1.7 309,894 + HMPREF1058_RS17885 0.83 -5.1 309,895 - HMPREF1058_RS17885 0.83 -0.7 309,907 + HMPREF1058_RS17885 0.84 -5.2 309,908 - HMPREF1058_RS17885 0.84 -1.1 309,962 + HMPREF1058_RS17885 0.86 -3.2 310,078 + -4.6 310,078 + -3.4 310,094 + -2.6 310,094 + -4.2 310,192 + -1.9 310,199 + -5.4 310,223 - -4.6 310,286 + -1.6 310,286 + -0.4 310,325 + -0.4 310,329 + HMPREF1058_RS17880 0.10 -2.5 310,432 + HMPREF1058_RS17880 0.39 +0.2 310,478 - HMPREF1058_RS17880 0.52 -2.1 310,547 + HMPREF1058_RS17880 0.72 -0.8 310,709 + +0.9 310,738 + -0.3 310,738 + +0.5 310,738 + +0.2 310,765 + -2.2 310,766 - -0.4 310,777 + -1.6 310,851 - HMPREF1058_RS17875 0.27 +0.6 310,851 - HMPREF1058_RS17875 0.27 -0.4 311,026 - HMPREF1058_RS17875 0.69 +0.5 311,026 - HMPREF1058_RS17875 0.69 -2.3 311,028 - HMPREF1058_RS17875 0.70 +1.0 311,114 - +0.5 311,167 + -0.6 311,167 + +0.9 311,181 + -0.6 311,211 - +0.0 311,211 - +0.4 311,224 - +0.9 311,262 + -0.7
Or see this region's nucleotide sequence