Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17150

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17165 and HMPREF1058_RS17160 are separated by 13 nucleotidesHMPREF1058_RS17160 and HMPREF1058_RS17155 are separated by 4 nucleotidesHMPREF1058_RS17155 and HMPREF1058_RS17150 are separated by 14 nucleotidesHMPREF1058_RS17150 and HMPREF1058_RS17145 overlap by 77 nucleotidesHMPREF1058_RS17145 and HMPREF1058_RS17140 are separated by 165 nucleotidesHMPREF1058_RS17140 and HMPREF1058_RS17135 overlap by 4 nucleotides HMPREF1058_RS17165: HMPREF1058_RS17165 - M3 family metallopeptidase, at 510,650 to 512,692 _RS17165 HMPREF1058_RS17160: HMPREF1058_RS17160 - DUF4847 family protein, at 512,706 to 513,200 _RS17160 HMPREF1058_RS17155: HMPREF1058_RS17155 - dCMP deaminase family protein, at 513,205 to 513,639 _RS17155 HMPREF1058_RS17150: HMPREF1058_RS17150 - S41 family peptidase, at 513,654 to 515,402 _RS17150 HMPREF1058_RS17145: HMPREF1058_RS17145 - 5-formyltetrahydrofolate cyclo-ligase, at 515,326 to 515,856 _RS17145 HMPREF1058_RS17140: HMPREF1058_RS17140 - DUF721 domain-containing protein, at 516,022 to 516,312 _RS17140 HMPREF1058_RS17135: HMPREF1058_RS17135 - DNA replication and repair protein RecF, at 516,309 to 517,424 _RS17135 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 512.714 kb on - strandat 512.714 kb on - strandat 512.727 kb on + strandat 512.729 kb on + strandat 512.729 kb on + strandat 512.729 kb on + strandat 512.730 kb on - strandat 512.731 kb on + strandat 512.734 kb on + strandat 512.753 kb on - strandat 512.865 kb on + strand, within HMPREF1058_RS17160at 512.866 kb on - strand, within HMPREF1058_RS17160at 512.866 kb on - strand, within HMPREF1058_RS17160at 512.966 kb on + strand, within HMPREF1058_RS17160at 513.112 kb on + strand, within HMPREF1058_RS17160at 513.145 kb on + strand, within HMPREF1058_RS17160at 513.185 kb on + strandat 513.185 kb on + strandat 513.185 kb on + strandat 513.186 kb on - strandat 513.186 kb on - strandat 513.203 kb on + strandat 513.204 kb on - strandat 513.247 kb on + strandat 513.264 kb on + strand, within HMPREF1058_RS17155at 513.283 kb on + strand, within HMPREF1058_RS17155at 513.347 kb on - strand, within HMPREF1058_RS17155at 513.414 kb on - strand, within HMPREF1058_RS17155at 513.446 kb on + strand, within HMPREF1058_RS17155at 513.484 kb on + strand, within HMPREF1058_RS17155at 513.485 kb on - strand, within HMPREF1058_RS17155at 513.485 kb on - strand, within HMPREF1058_RS17155at 513.506 kb on + strand, within HMPREF1058_RS17155at 513.507 kb on - strand, within HMPREF1058_RS17155at 513.607 kb on - strandat 513.648 kb on - strandat 513.653 kb on + strandat 513.700 kb on + strandat 513.763 kb on - strandat 513.776 kb on + strandat 513.829 kb on + strand, within HMPREF1058_RS17150at 513.830 kb on - strand, within HMPREF1058_RS17150at 513.833 kb on + strand, within HMPREF1058_RS17150at 513.833 kb on + strand, within HMPREF1058_RS17150at 513.834 kb on - strand, within HMPREF1058_RS17150at 513.834 kb on - strand, within HMPREF1058_RS17150at 513.866 kb on + strand, within HMPREF1058_RS17150at 513.866 kb on + strand, within HMPREF1058_RS17150at 513.907 kb on - strand, within HMPREF1058_RS17150at 513.980 kb on + strand, within HMPREF1058_RS17150at 513.995 kb on + strand, within HMPREF1058_RS17150at 514.006 kb on + strand, within HMPREF1058_RS17150at 514.006 kb on + strand, within HMPREF1058_RS17150at 514.069 kb on + strand, within HMPREF1058_RS17150at 514.069 kb on + strand, within HMPREF1058_RS17150at 514.113 kb on + strand, within HMPREF1058_RS17150at 514.113 kb on + strand, within HMPREF1058_RS17150at 514.237 kb on + strand, within HMPREF1058_RS17150at 514.277 kb on - strand, within HMPREF1058_RS17150at 514.392 kb on + strand, within HMPREF1058_RS17150at 514.392 kb on + strand, within HMPREF1058_RS17150at 514.393 kb on - strand, within HMPREF1058_RS17150at 514.394 kb on + strand, within HMPREF1058_RS17150at 514.394 kb on + strand, within HMPREF1058_RS17150at 514.394 kb on + strand, within HMPREF1058_RS17150at 514.395 kb on - strand, within HMPREF1058_RS17150at 514.452 kb on + strand, within HMPREF1058_RS17150at 514.488 kb on - strand, within HMPREF1058_RS17150at 514.640 kb on - strand, within HMPREF1058_RS17150at 514.649 kb on + strand, within HMPREF1058_RS17150at 514.698 kb on + strand, within HMPREF1058_RS17150at 514.698 kb on + strand, within HMPREF1058_RS17150at 514.731 kb on + strand, within HMPREF1058_RS17150at 514.731 kb on + strand, within HMPREF1058_RS17150at 514.862 kb on - strand, within HMPREF1058_RS17150at 514.862 kb on - strand, within HMPREF1058_RS17150at 514.864 kb on - strand, within HMPREF1058_RS17150at 514.908 kb on - strand, within HMPREF1058_RS17150at 514.930 kb on - strand, within HMPREF1058_RS17150at 515.055 kb on - strand, within HMPREF1058_RS17150at 515.110 kb on + strand, within HMPREF1058_RS17150at 515.111 kb on - strand, within HMPREF1058_RS17150at 515.111 kb on - strand, within HMPREF1058_RS17150at 515.111 kb on - strand, within HMPREF1058_RS17150at 515.118 kb on + strand, within HMPREF1058_RS17150at 515.167 kb on - strand, within HMPREF1058_RS17150at 515.167 kb on - strand, within HMPREF1058_RS17150at 515.190 kb on + strand, within HMPREF1058_RS17150at 515.190 kb on + strand, within HMPREF1058_RS17150at 515.190 kb on + strand, within HMPREF1058_RS17150at 515.190 kb on + strand, within HMPREF1058_RS17150at 515.191 kb on - strand, within HMPREF1058_RS17150at 515.192 kb on - strand, within HMPREF1058_RS17150at 515.194 kb on + strand, within HMPREF1058_RS17150at 515.194 kb on + strand, within HMPREF1058_RS17150at 515.195 kb on - strand, within HMPREF1058_RS17150at 515.195 kb on - strand, within HMPREF1058_RS17150at 515.242 kb on + strandat 515.287 kb on + strandat 515.287 kb on + strandat 515.316 kb on - strandat 515.376 kb on - strandat 515.453 kb on - strand, within HMPREF1058_RS17145at 515.474 kb on + strand, within HMPREF1058_RS17145at 515.475 kb on - strand, within HMPREF1058_RS17145at 515.475 kb on - strand, within HMPREF1058_RS17145at 515.565 kb on + strand, within HMPREF1058_RS17145at 515.600 kb on - strand, within HMPREF1058_RS17145at 515.632 kb on - strand, within HMPREF1058_RS17145at 515.632 kb on - strand, within HMPREF1058_RS17145at 515.648 kb on + strand, within HMPREF1058_RS17145at 515.729 kb on + strand, within HMPREF1058_RS17145at 515.755 kb on - strand, within HMPREF1058_RS17145at 515.756 kb on + strand, within HMPREF1058_RS17145at 515.756 kb on + strand, within HMPREF1058_RS17145at 515.756 kb on + strand, within HMPREF1058_RS17145at 515.756 kb on + strand, within HMPREF1058_RS17145at 515.757 kb on - strand, within HMPREF1058_RS17145at 515.757 kb on - strand, within HMPREF1058_RS17145at 515.757 kb on - strand, within HMPREF1058_RS17145at 515.757 kb on - strand, within HMPREF1058_RS17145at 515.760 kb on + strand, within HMPREF1058_RS17145at 515.762 kb on + strand, within HMPREF1058_RS17145at 515.762 kb on + strand, within HMPREF1058_RS17145at 515.762 kb on + strand, within HMPREF1058_RS17145at 515.762 kb on + strand, within HMPREF1058_RS17145at 515.762 kb on + strand, within HMPREF1058_RS17145at 515.762 kb on + strand, within HMPREF1058_RS17145at 515.763 kb on - strand, within HMPREF1058_RS17145at 515.763 kb on - strand, within HMPREF1058_RS17145at 515.763 kb on - strand, within HMPREF1058_RS17145at 515.855 kb on - strandat 515.884 kb on - strandat 515.888 kb on + strandat 515.894 kb on + strandat 515.973 kb on - strandat 515.973 kb on - strandat 515.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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512,714 - -0.6
512,714 - -1.9
512,727 + +0.1
512,729 + -0.3
512,729 + -0.3
512,729 + -2.5
512,730 - -1.7
512,731 + +0.1
512,734 + -0.4
512,753 - -1.9
512,865 + HMPREF1058_RS17160 0.32 -0.3
512,866 - HMPREF1058_RS17160 0.32 -0.3
512,866 - HMPREF1058_RS17160 0.32 +0.1
512,966 + HMPREF1058_RS17160 0.53 -0.3
513,112 + HMPREF1058_RS17160 0.82 -1.5
513,145 + HMPREF1058_RS17160 0.89 +0.2
513,185 + -0.6
513,185 + -0.5
513,185 + +0.1
513,186 - -1.5
513,186 - -0.6
513,203 + +2.4
513,204 - -1.5
513,247 + -1.3
513,264 + HMPREF1058_RS17155 0.14 -2.0
513,283 + HMPREF1058_RS17155 0.18 -2.4
513,347 - HMPREF1058_RS17155 0.33 -0.6
513,414 - HMPREF1058_RS17155 0.48 -0.3
513,446 + HMPREF1058_RS17155 0.55 +0.7
513,484 + HMPREF1058_RS17155 0.64 -1.6
513,485 - HMPREF1058_RS17155 0.64 -2.0
513,485 - HMPREF1058_RS17155 0.64 -0.3
513,506 + HMPREF1058_RS17155 0.69 -1.6
513,507 - HMPREF1058_RS17155 0.69 -1.8
513,607 - +0.1
513,648 - -0.5
513,653 + -1.3
513,700 + -2.0
513,763 - -3.1
513,776 + +0.7
513,829 + HMPREF1058_RS17150 0.10 -2.5
513,830 - HMPREF1058_RS17150 0.10 -3.4
513,833 + HMPREF1058_RS17150 0.10 -2.2
513,833 + HMPREF1058_RS17150 0.10 -2.5
513,834 - HMPREF1058_RS17150 0.10 -1.1
513,834 - HMPREF1058_RS17150 0.10 -4.2
513,866 + HMPREF1058_RS17150 0.12 -3.2
513,866 + HMPREF1058_RS17150 0.12 -2.9
513,907 - HMPREF1058_RS17150 0.14 -3.7
513,980 + HMPREF1058_RS17150 0.19 -3.6
513,995 + HMPREF1058_RS17150 0.19 -2.2
514,006 + HMPREF1058_RS17150 0.20 -3.4
514,006 + HMPREF1058_RS17150 0.20 -1.9
514,069 + HMPREF1058_RS17150 0.24 -2.3
514,069 + HMPREF1058_RS17150 0.24 -0.7
514,113 + HMPREF1058_RS17150 0.26 +0.0
514,113 + HMPREF1058_RS17150 0.26 -2.1
514,237 + HMPREF1058_RS17150 0.33 -3.9
514,277 - HMPREF1058_RS17150 0.36 -2.2
514,392 + HMPREF1058_RS17150 0.42 -3.7
514,392 + HMPREF1058_RS17150 0.42 -3.4
514,393 - HMPREF1058_RS17150 0.42 -3.6
514,394 + HMPREF1058_RS17150 0.42 -2.6
514,394 + HMPREF1058_RS17150 0.42 -2.3
514,394 + HMPREF1058_RS17150 0.42 -3.9
514,395 - HMPREF1058_RS17150 0.42 -1.5
514,452 + HMPREF1058_RS17150 0.46 -0.6
514,488 - HMPREF1058_RS17150 0.48 -1.6
514,640 - HMPREF1058_RS17150 0.56 -0.3
514,649 + HMPREF1058_RS17150 0.57 -3.3
514,698 + HMPREF1058_RS17150 0.60 -2.5
514,698 + HMPREF1058_RS17150 0.60 -3.2
514,731 + HMPREF1058_RS17150 0.62 -1.9
514,731 + HMPREF1058_RS17150 0.62 -5.2
514,862 - HMPREF1058_RS17150 0.69 -2.6
514,862 - HMPREF1058_RS17150 0.69 -5.0
514,864 - HMPREF1058_RS17150 0.69 -0.9
514,908 - HMPREF1058_RS17150 0.72 -0.3
514,930 - HMPREF1058_RS17150 0.73 -3.5
515,055 - HMPREF1058_RS17150 0.80 -0.5
515,110 + HMPREF1058_RS17150 0.83 -2.7
515,111 - HMPREF1058_RS17150 0.83 -2.1
515,111 - HMPREF1058_RS17150 0.83 -4.2
515,111 - HMPREF1058_RS17150 0.83 -3.0
515,118 + HMPREF1058_RS17150 0.84 -1.3
515,167 - HMPREF1058_RS17150 0.87 -2.3
515,167 - HMPREF1058_RS17150 0.87 -2.1
515,190 + HMPREF1058_RS17150 0.88 -1.5
515,190 + HMPREF1058_RS17150 0.88 -3.5
515,190 + HMPREF1058_RS17150 0.88 -0.6
515,190 + HMPREF1058_RS17150 0.88 -1.3
515,191 - HMPREF1058_RS17150 0.88 -3.7
515,192 - HMPREF1058_RS17150 0.88 +0.1
515,194 + HMPREF1058_RS17150 0.88 +0.7
515,194 + HMPREF1058_RS17150 0.88 -3.5
515,195 - HMPREF1058_RS17150 0.88 -2.3
515,195 - HMPREF1058_RS17150 0.88 -2.2
515,242 + -1.3
515,287 + -0.8
515,287 + -0.9
515,316 - -0.1
515,376 - +0.1
515,453 - HMPREF1058_RS17145 0.24 -3.4
515,474 + HMPREF1058_RS17145 0.28 -0.3
515,475 - HMPREF1058_RS17145 0.28 -1.3
515,475 - HMPREF1058_RS17145 0.28 -0.3
515,565 + HMPREF1058_RS17145 0.45 -1.6
515,600 - HMPREF1058_RS17145 0.52 -1.2
515,632 - HMPREF1058_RS17145 0.58 -0.9
515,632 - HMPREF1058_RS17145 0.58 -0.6
515,648 + HMPREF1058_RS17145 0.61 -2.1
515,729 + HMPREF1058_RS17145 0.76 -0.4
515,755 - HMPREF1058_RS17145 0.81 -2.2
515,756 + HMPREF1058_RS17145 0.81 -0.3
515,756 + HMPREF1058_RS17145 0.81 -0.5
515,756 + HMPREF1058_RS17145 0.81 -0.7
515,756 + HMPREF1058_RS17145 0.81 +0.0
515,757 - HMPREF1058_RS17145 0.81 -0.6
515,757 - HMPREF1058_RS17145 0.81 -0.9
515,757 - HMPREF1058_RS17145 0.81 +0.5
515,757 - HMPREF1058_RS17145 0.81 -0.4
515,760 + HMPREF1058_RS17145 0.82 -1.0
515,762 + HMPREF1058_RS17145 0.82 -1.5
515,762 + HMPREF1058_RS17145 0.82 -2.2
515,762 + HMPREF1058_RS17145 0.82 -2.0
515,762 + HMPREF1058_RS17145 0.82 -0.6
515,762 + HMPREF1058_RS17145 0.82 -1.3
515,762 + HMPREF1058_RS17145 0.82 -1.7
515,763 - HMPREF1058_RS17145 0.82 -0.8
515,763 - HMPREF1058_RS17145 0.82 -1.2
515,763 - HMPREF1058_RS17145 0.82 -2.0
515,855 - -0.3
515,884 - -1.2
515,888 + -1.3
515,894 + +1.1
515,973 - -1.0
515,973 - -1.0
515,973 - -1.5

Or see this region's nucleotide sequence