Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17075

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17080 and HMPREF1058_RS17075 are separated by 166 nucleotidesHMPREF1058_RS17075 and HMPREF1058_RS17070 are separated by 135 nucleotides HMPREF1058_RS17080: HMPREF1058_RS17080 - sigma-54-dependent Fis family transcriptional regulator, at 523,217 to 524,482 _RS17080 HMPREF1058_RS17075: HMPREF1058_RS17075 - inositol-3-phosphate synthase, at 524,649 to 525,956 _RS17075 HMPREF1058_RS17070: HMPREF1058_RS17070 - ribokinase, at 526,092 to 526,988 _RS17070 Position (kb) 524 525 526Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 523.861 kb on - strand, within HMPREF1058_RS17080at 523.966 kb on - strand, within HMPREF1058_RS17080at 524.492 kb on - strandat 524.495 kb on - strandat 524.495 kb on - strandat 524.556 kb on + strandat 524.557 kb on - strandat 524.580 kb on + strandat 524.646 kb on - strandat 524.646 kb on - strandat 524.708 kb on + strandat 524.709 kb on - strandat 524.714 kb on - strandat 524.753 kb on + strandat 524.842 kb on - strand, within HMPREF1058_RS17075at 524.900 kb on + strand, within HMPREF1058_RS17075at 524.957 kb on + strand, within HMPREF1058_RS17075at 524.981 kb on - strand, within HMPREF1058_RS17075at 524.991 kb on + strand, within HMPREF1058_RS17075at 524.991 kb on + strand, within HMPREF1058_RS17075at 524.991 kb on + strand, within HMPREF1058_RS17075at 524.992 kb on - strand, within HMPREF1058_RS17075at 524.992 kb on - strand, within HMPREF1058_RS17075at 524.996 kb on + strand, within HMPREF1058_RS17075at 524.997 kb on - strand, within HMPREF1058_RS17075at 525.005 kb on - strand, within HMPREF1058_RS17075at 525.056 kb on + strand, within HMPREF1058_RS17075at 525.057 kb on - strand, within HMPREF1058_RS17075at 525.103 kb on - strand, within HMPREF1058_RS17075at 525.197 kb on + strand, within HMPREF1058_RS17075at 525.269 kb on + strand, within HMPREF1058_RS17075at 525.270 kb on - strand, within HMPREF1058_RS17075at 525.290 kb on + strand, within HMPREF1058_RS17075at 525.337 kb on + strand, within HMPREF1058_RS17075at 525.344 kb on - strand, within HMPREF1058_RS17075at 525.386 kb on + strand, within HMPREF1058_RS17075at 525.439 kb on + strand, within HMPREF1058_RS17075at 525.440 kb on - strand, within HMPREF1058_RS17075at 525.440 kb on - strand, within HMPREF1058_RS17075at 525.563 kb on + strand, within HMPREF1058_RS17075at 525.586 kb on + strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.619 kb on - strand, within HMPREF1058_RS17075at 525.648 kb on - strand, within HMPREF1058_RS17075at 525.691 kb on + strand, within HMPREF1058_RS17075at 525.776 kb on - strand, within HMPREF1058_RS17075at 525.809 kb on + strand, within HMPREF1058_RS17075at 525.852 kb on - strandat 525.888 kb on - strandat 526.017 kb on + strandat 526.083 kb on + strandat 526.087 kb on + strandat 526.088 kb on - strandat 526.122 kb on - strandat 526.127 kb on - strandat 526.127 kb on - strandat 526.158 kb on + strandat 526.159 kb on - strandat 526.159 kb on - strandat 526.160 kb on + strandat 526.160 kb on + strandat 526.208 kb on - strand, within HMPREF1058_RS17070at 526.304 kb on + strand, within HMPREF1058_RS17070at 526.304 kb on + strand, within HMPREF1058_RS17070at 526.305 kb on - strand, within HMPREF1058_RS17070at 526.326 kb on + strand, within HMPREF1058_RS17070at 526.337 kb on + strand, within HMPREF1058_RS17070at 526.338 kb on - strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.420 kb on + strand, within HMPREF1058_RS17070at 526.421 kb on - strand, within HMPREF1058_RS17070at 526.502 kb on + strand, within HMPREF1058_RS17070at 526.502 kb on + strand, within HMPREF1058_RS17070at 526.504 kb on + strand, within HMPREF1058_RS17070at 526.504 kb on + strandat 526.504 kb on + strand, within HMPREF1058_RS17070at 526.505 kb on - strand, within HMPREF1058_RS17070at 526.514 kb on - strand, within HMPREF1058_RS17070at 526.527 kb on + strand, within HMPREF1058_RS17070at 526.531 kb on + strand, within HMPREF1058_RS17070at 526.596 kb on + strand, within HMPREF1058_RS17070at 526.672 kb on + strand, within HMPREF1058_RS17070at 526.679 kb on - strand, within HMPREF1058_RS17070at 526.702 kb on + strand, within HMPREF1058_RS17070at 526.710 kb on - strand, within HMPREF1058_RS17070at 526.749 kb on - strand, within HMPREF1058_RS17070at 526.786 kb on + strand, within HMPREF1058_RS17070at 526.787 kb on - strand, within HMPREF1058_RS17070at 526.790 kb on - strand, within HMPREF1058_RS17070at 526.790 kb on - strand, within HMPREF1058_RS17070at 526.812 kb on - strand, within HMPREF1058_RS17070at 526.815 kb on + strand, within HMPREF1058_RS17070at 526.815 kb on + strand, within HMPREF1058_RS17070at 526.816 kb on - strand, within HMPREF1058_RS17070at 526.816 kb on - strand, within HMPREF1058_RS17070at 526.831 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.857 kb on + strand, within HMPREF1058_RS17070at 526.887 kb on - strand, within HMPREF1058_RS17070at 526.942 kb on + strandat 526.942 kb on + strandat 526.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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523,861 - HMPREF1058_RS17080 0.51 -1.3
523,966 - HMPREF1058_RS17080 0.59 -1.9
524,492 - -0.3
524,495 - -1.6
524,495 - -2.3
524,556 + -2.3
524,557 - +0.4
524,580 + -4.9
524,646 - -2.1
524,646 - -1.3
524,708 + -3.5
524,709 - -5.0
524,714 - -1.6
524,753 + -3.2
524,842 - HMPREF1058_RS17075 0.15 -4.0
524,900 + HMPREF1058_RS17075 0.19 -4.6
524,957 + HMPREF1058_RS17075 0.24 -3.4
524,981 - HMPREF1058_RS17075 0.25 -4.6
524,991 + HMPREF1058_RS17075 0.26 -2.1
524,991 + HMPREF1058_RS17075 0.26 -4.4
524,991 + HMPREF1058_RS17075 0.26 -2.1
524,992 - HMPREF1058_RS17075 0.26 -1.6
524,992 - HMPREF1058_RS17075 0.26 -2.2
524,996 + HMPREF1058_RS17075 0.27 -5.1
524,997 - HMPREF1058_RS17075 0.27 -2.0
525,005 - HMPREF1058_RS17075 0.27 -2.7
525,056 + HMPREF1058_RS17075 0.31 -2.8
525,057 - HMPREF1058_RS17075 0.31 -2.6
525,103 - HMPREF1058_RS17075 0.35 -4.5
525,197 + HMPREF1058_RS17075 0.42 -2.0
525,269 + HMPREF1058_RS17075 0.47 -2.6
525,270 - HMPREF1058_RS17075 0.47 -0.9
525,290 + HMPREF1058_RS17075 0.49 -3.7
525,337 + HMPREF1058_RS17075 0.53 -2.8
525,344 - HMPREF1058_RS17075 0.53 -1.8
525,386 + HMPREF1058_RS17075 0.56 -3.1
525,439 + HMPREF1058_RS17075 0.60 -2.5
525,440 - HMPREF1058_RS17075 0.60 -3.2
525,440 - HMPREF1058_RS17075 0.60 -0.6
525,563 + HMPREF1058_RS17075 0.70 -1.6
525,586 + HMPREF1058_RS17075 0.72 -2.4
525,587 - HMPREF1058_RS17075 0.72 -2.6
525,587 - HMPREF1058_RS17075 0.72 -2.0
525,587 - HMPREF1058_RS17075 0.72 -1.9
525,587 - HMPREF1058_RS17075 0.72 -2.7
525,619 - HMPREF1058_RS17075 0.74 -3.8
525,648 - HMPREF1058_RS17075 0.76 -3.1
525,691 + HMPREF1058_RS17075 0.80 -1.6
525,776 - HMPREF1058_RS17075 0.86 -5.1
525,809 + HMPREF1058_RS17075 0.89 -1.5
525,852 - -2.7
525,888 - -2.3
526,017 + -0.6
526,083 + -1.9
526,087 + -1.0
526,088 - -1.6
526,122 - +0.8
526,127 - +0.3
526,127 - +0.3
526,158 + +0.6
526,159 - +0.8
526,159 - +1.2
526,160 + +1.3
526,160 + -0.1
526,208 - HMPREF1058_RS17070 0.13 +0.9
526,304 + HMPREF1058_RS17070 0.24 -0.8
526,304 + HMPREF1058_RS17070 0.24 -2.4
526,305 - HMPREF1058_RS17070 0.24 -0.1
526,326 + HMPREF1058_RS17070 0.26 -2.3
526,337 + HMPREF1058_RS17070 0.27 -1.3
526,338 - HMPREF1058_RS17070 0.27 +1.1
526,341 + HMPREF1058_RS17070 0.28 +0.2
526,341 + HMPREF1058_RS17070 0.28 -0.8
526,341 + HMPREF1058_RS17070 0.28 -1.1
526,420 + HMPREF1058_RS17070 0.37 -2.1
526,421 - HMPREF1058_RS17070 0.37 +2.7
526,502 + HMPREF1058_RS17070 0.46 -1.0
526,502 + HMPREF1058_RS17070 0.46 +3.3
526,504 + HMPREF1058_RS17070 0.46 -1.3
526,504 + -2.2
526,504 + HMPREF1058_RS17070 0.46 +1.7
526,505 - HMPREF1058_RS17070 0.46 +0.2
526,514 - HMPREF1058_RS17070 0.47 -0.8
526,527 + HMPREF1058_RS17070 0.48 +0.6
526,531 + HMPREF1058_RS17070 0.49 -0.4
526,596 + HMPREF1058_RS17070 0.56 -0.3
526,672 + HMPREF1058_RS17070 0.65 +0.0
526,679 - HMPREF1058_RS17070 0.65 +0.4
526,702 + HMPREF1058_RS17070 0.68 +1.5
526,710 - HMPREF1058_RS17070 0.69 -1.1
526,749 - HMPREF1058_RS17070 0.73 -0.9
526,786 + HMPREF1058_RS17070 0.77 -1.4
526,787 - HMPREF1058_RS17070 0.77 +0.2
526,790 - HMPREF1058_RS17070 0.78 +0.7
526,790 - HMPREF1058_RS17070 0.78 -0.8
526,812 - HMPREF1058_RS17070 0.80 -2.2
526,815 + HMPREF1058_RS17070 0.81 -3.1
526,815 + HMPREF1058_RS17070 0.81 -0.7
526,816 - HMPREF1058_RS17070 0.81 -1.5
526,816 - HMPREF1058_RS17070 0.81 +0.4
526,831 + HMPREF1058_RS17070 0.82 -1.2
526,833 + HMPREF1058_RS17070 0.83 -0.7
526,833 + HMPREF1058_RS17070 0.83 -1.8
526,833 + HMPREF1058_RS17070 0.83 -2.0
526,834 - HMPREF1058_RS17070 0.83 -0.2
526,834 - HMPREF1058_RS17070 0.83 +0.0
526,834 - HMPREF1058_RS17070 0.83 -0.4
526,857 + HMPREF1058_RS17070 0.85 -1.2
526,887 - HMPREF1058_RS17070 0.89 -0.7
526,942 + -2.9
526,942 + +1.3
526,943 - -1.8

Or see this region's nucleotide sequence