Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides HMPREF1058_RS17040 and HMPREF1058_RS17035 are separated by 41 nucleotides HMPREF1058_RS17035 and HMPREF1058_RS17030 are separated by 26 nucleotides
HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782
_RS17045
HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512
_RS17040
HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654
_RS17035
HMPREF1058_RS17030: HMPREF1058_RS17030 - DUF4837 family protein, at 533,681 to 534,745
_RS17030
Position (kb) 532
533
534 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 531.702 kb on - strand at 531.723 kb on + strand at 531.724 kb on - strand at 531.799 kb on - strand at 531.859 kb on + strand at 531.859 kb on + strand at 531.937 kb on - strand, within HMPREF1058_RS17040 at 531.946 kb on - strand, within HMPREF1058_RS17040 at 531.958 kb on - strand, within HMPREF1058_RS17040 at 532.013 kb on - strand, within HMPREF1058_RS17040 at 532.013 kb on - strand, within HMPREF1058_RS17040 at 532.014 kb on + strand, within HMPREF1058_RS17040 at 532.016 kb on + strand, within HMPREF1058_RS17040 at 532.080 kb on + strand, within HMPREF1058_RS17040 at 532.080 kb on + strand, within HMPREF1058_RS17040 at 532.081 kb on - strand, within HMPREF1058_RS17040 at 532.083 kb on - strand, within HMPREF1058_RS17040 at 532.103 kb on - strand, within HMPREF1058_RS17040 at 532.124 kb on + strand, within HMPREF1058_RS17040 at 532.125 kb on - strand, within HMPREF1058_RS17040 at 532.188 kb on + strand, within HMPREF1058_RS17040 at 532.215 kb on + strand, within HMPREF1058_RS17040 at 532.354 kb on - strand, within HMPREF1058_RS17040 at 532.498 kb on - strand at 532.516 kb on + strand at 532.590 kb on - strand at 532.616 kb on - strand at 532.622 kb on + strand at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.692 kb on - strand, within HMPREF1058_RS17035 at 532.742 kb on - strand at 532.748 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.792 kb on + strand, within HMPREF1058_RS17035 at 532.793 kb on - strand, within HMPREF1058_RS17035 at 532.849 kb on + strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.879 kb on + strand, within HMPREF1058_RS17035 at 532.965 kb on + strand, within HMPREF1058_RS17035 at 532.967 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.117 kb on + strand, within HMPREF1058_RS17035 at 533.136 kb on + strand, within HMPREF1058_RS17035 at 533.228 kb on + strand at 533.231 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.280 kb on - strand, within HMPREF1058_RS17035 at 533.499 kb on - strand, within HMPREF1058_RS17035 at 533.544 kb on - strand, within HMPREF1058_RS17035 at 533.586 kb on + strand at 533.594 kb on - strand at 533.641 kb on + strand at 533.656 kb on + strand at 533.657 kb on - strand at 533.658 kb on + strand at 533.661 kb on + strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.664 kb on - strand at 533.664 kb on - strand at 533.669 kb on - strand at 533.669 kb on - strand at 533.671 kb on - strand at 533.702 kb on - strand at 533.736 kb on - strand at 534.010 kb on - strand, within HMPREF1058_RS17030 at 534.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 531,702 - -1.5 531,723 + -1.6 531,724 - -2.6 531,799 - -1.1 531,859 + -1.3 531,859 + -1.6 531,937 - HMPREF1058_RS17040 0.19 -1.3 531,946 - HMPREF1058_RS17040 0.20 -0.9 531,958 - HMPREF1058_RS17040 0.22 -1.3 532,013 - HMPREF1058_RS17040 0.30 -2.8 532,013 - HMPREF1058_RS17040 0.30 -3.7 532,014 + HMPREF1058_RS17040 0.30 -3.8 532,016 + HMPREF1058_RS17040 0.30 -2.0 532,080 + HMPREF1058_RS17040 0.39 -1.1 532,080 + HMPREF1058_RS17040 0.39 -1.9 532,081 - HMPREF1058_RS17040 0.39 -0.9 532,083 - HMPREF1058_RS17040 0.40 -2.0 532,103 - HMPREF1058_RS17040 0.42 -3.7 532,124 + HMPREF1058_RS17040 0.45 -0.3 532,125 - HMPREF1058_RS17040 0.45 -2.1 532,188 + HMPREF1058_RS17040 0.54 -3.3 532,215 + HMPREF1058_RS17040 0.58 -0.6 532,354 - HMPREF1058_RS17040 0.78 -1.9 532,498 - -2.7 532,516 + -3.0 532,590 - +0.6 532,616 - +0.3 532,622 + -2.3 532,688 - HMPREF1058_RS17035 0.12 -5.2 532,688 - HMPREF1058_RS17035 0.12 -2.3 532,688 - HMPREF1058_RS17035 0.12 -3.5 532,692 - HMPREF1058_RS17035 0.13 -3.3 532,742 - +0.1 532,748 + HMPREF1058_RS17035 0.18 -1.8 532,770 + HMPREF1058_RS17035 0.20 -2.3 532,770 + HMPREF1058_RS17035 0.20 +0.1 532,770 + HMPREF1058_RS17035 0.20 +0.7 532,792 + HMPREF1058_RS17035 0.22 -2.3 532,793 - HMPREF1058_RS17035 0.22 -4.7 532,849 + HMPREF1058_RS17035 0.27 -1.3 532,850 - HMPREF1058_RS17035 0.27 -4.0 532,850 - HMPREF1058_RS17035 0.27 -3.0 532,879 + HMPREF1058_RS17035 0.30 -4.0 532,965 + HMPREF1058_RS17035 0.37 -3.1 532,967 + HMPREF1058_RS17035 0.38 -1.1 533,034 + HMPREF1058_RS17035 0.44 -4.3 533,034 + HMPREF1058_RS17035 0.44 -2.8 533,035 - HMPREF1058_RS17035 0.44 -2.0 533,035 - HMPREF1058_RS17035 0.44 -4.4 533,035 - HMPREF1058_RS17035 0.44 -1.3 533,035 - HMPREF1058_RS17035 0.44 -2.7 533,035 - HMPREF1058_RS17035 0.44 -5.2 533,067 + HMPREF1058_RS17035 0.47 -0.9 533,067 + HMPREF1058_RS17035 0.47 +1.7 533,103 - HMPREF1058_RS17035 0.50 -4.2 533,103 - HMPREF1058_RS17035 0.50 -3.4 533,103 - HMPREF1058_RS17035 0.50 -0.6 533,103 - HMPREF1058_RS17035 0.50 -2.9 533,103 - HMPREF1058_RS17035 0.50 -3.2 533,117 + HMPREF1058_RS17035 0.51 -2.6 533,136 + HMPREF1058_RS17035 0.53 -1.6 533,228 + -0.3 533,231 - HMPREF1058_RS17035 0.61 -3.6 533,274 - HMPREF1058_RS17035 0.65 -2.6 533,274 - HMPREF1058_RS17035 0.65 -4.0 533,280 - HMPREF1058_RS17035 0.66 -3.5 533,499 - HMPREF1058_RS17035 0.86 -3.6 533,544 - HMPREF1058_RS17035 0.90 -3.7 533,586 + -3.6 533,594 - -2.5 533,641 + -3.7 533,656 + -1.1 533,657 - -4.7 533,658 + -2.3 533,661 + -4.6 533,662 - -4.1 533,662 - -3.2 533,662 - -1.6 533,662 - -2.4 533,664 - -2.6 533,664 - -3.2 533,669 - -0.2 533,669 - -0.2 533,671 - -0.0 533,702 - +1.2 533,736 - +0.6 534,010 - HMPREF1058_RS17030 0.31 -0.6 534,184 - -0.5
Or see this region's nucleotide sequence