Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16240

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16250 and HMPREF1058_RS16245 overlap by 1 nucleotidesHMPREF1058_RS16245 and HMPREF1058_RS16240 are separated by 77 nucleotidesHMPREF1058_RS16240 and HMPREF1058_RS16235 overlap by 4 nucleotides HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177 _RS16250 HMPREF1058_RS16245: HMPREF1058_RS16245 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 724,177 to 724,998 _RS16245 HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131 _RS16240 HMPREF1058_RS16235: HMPREF1058_RS16235 - AMP-binding protein, at 726,128 to 727,213 _RS16235 Position (kb) 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1at 724.145 kb on + strandat 724.146 kb on - strandat 724.146 kb on - strandat 724.473 kb on - strand, within HMPREF1058_RS16245at 724.473 kb on - strand, within HMPREF1058_RS16245at 724.497 kb on + strand, within HMPREF1058_RS16245at 724.616 kb on + strand, within HMPREF1058_RS16245at 724.877 kb on + strand, within HMPREF1058_RS16245at 724.878 kb on - strand, within HMPREF1058_RS16245at 724.909 kb on + strand, within HMPREF1058_RS16245at 724.909 kb on + strand, within HMPREF1058_RS16245at 724.910 kb on - strand, within HMPREF1058_RS16245at 725.143 kb on + strandat 725.143 kb on + strandat 725.145 kb on + strandat 725.145 kb on + strandat 725.145 kb on + strandat 725.147 kb on + strandat 725.161 kb on + strandat 725.256 kb on + strand, within HMPREF1058_RS16240at 725.782 kb on + strandat 725.838 kb on + strand, within HMPREF1058_RS16240at 725.839 kb on - strand, within HMPREF1058_RS16240at 725.839 kb on - strand, within HMPREF1058_RS16240at 726.041 kb on + strandat 726.043 kb on + strandat 726.044 kb on - strandat 726.044 kb on - strandat 726.044 kb on - strandat 726.308 kb on - strand, within HMPREF1058_RS16235at 726.342 kb on - strand, within HMPREF1058_RS16235at 726.427 kb on + strand, within HMPREF1058_RS16235at 726.428 kb on - strand, within HMPREF1058_RS16235at 726.428 kb on - strand, within HMPREF1058_RS16235at 726.441 kb on - strand, within HMPREF1058_RS16235at 726.441 kb on - strand, within HMPREF1058_RS16235at 726.465 kb on + strand, within HMPREF1058_RS16235at 726.465 kb on + strand, within HMPREF1058_RS16235at 726.466 kb on - strand, within HMPREF1058_RS16235at 726.833 kb on + strand, within HMPREF1058_RS16235at 726.833 kb on + strand, within HMPREF1058_RS16235at 726.834 kb on - strand, within HMPREF1058_RS16235at 726.877 kb on - strand, within HMPREF1058_RS16235at 726.877 kb on - strand, within HMPREF1058_RS16235at 726.877 kb on - strand, within HMPREF1058_RS16235at 726.961 kb on - strand, within HMPREF1058_RS16235at 726.961 kb on - strand, within HMPREF1058_RS16235at 727.083 kb on + strand, within HMPREF1058_RS16235at 727.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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724,145 + -2.7
724,146 - -3.7
724,146 - -1.0
724,473 - HMPREF1058_RS16245 0.36 +1.0
724,473 - HMPREF1058_RS16245 0.36 -0.3
724,497 + HMPREF1058_RS16245 0.39 -0.2
724,616 + HMPREF1058_RS16245 0.53 -1.0
724,877 + HMPREF1058_RS16245 0.85 -3.4
724,878 - HMPREF1058_RS16245 0.85 -0.5
724,909 + HMPREF1058_RS16245 0.89 +0.4
724,909 + HMPREF1058_RS16245 0.89 -0.4
724,910 - HMPREF1058_RS16245 0.89 -0.9
725,143 + -2.9
725,143 + -0.4
725,145 + -0.4
725,145 + -1.2
725,145 + -1.0
725,147 + -3.5
725,161 + -1.0
725,256 + HMPREF1058_RS16240 0.17 -1.3
725,782 + -0.5
725,838 + HMPREF1058_RS16240 0.72 -3.6
725,839 - HMPREF1058_RS16240 0.72 -1.5
725,839 - HMPREF1058_RS16240 0.72 -0.2
726,041 + -0.3
726,043 + -0.7
726,044 - -1.6
726,044 - -0.6
726,044 - +0.8
726,308 - HMPREF1058_RS16235 0.17 -0.8
726,342 - HMPREF1058_RS16235 0.20 -0.9
726,427 + HMPREF1058_RS16235 0.28 -1.2
726,428 - HMPREF1058_RS16235 0.28 +0.7
726,428 - HMPREF1058_RS16235 0.28 +0.1
726,441 - HMPREF1058_RS16235 0.29 -0.7
726,441 - HMPREF1058_RS16235 0.29 -0.6
726,465 + HMPREF1058_RS16235 0.31 -1.3
726,465 + HMPREF1058_RS16235 0.31 -0.9
726,466 - HMPREF1058_RS16235 0.31 +0.8
726,833 + HMPREF1058_RS16235 0.65 -0.8
726,833 + HMPREF1058_RS16235 0.65 -2.3
726,834 - HMPREF1058_RS16235 0.65 -2.5
726,877 - HMPREF1058_RS16235 0.69 -1.7
726,877 - HMPREF1058_RS16235 0.69 -0.7
726,877 - HMPREF1058_RS16235 0.69 -0.4
726,961 - HMPREF1058_RS16235 0.77 -0.8
726,961 - HMPREF1058_RS16235 0.77 -0.7
727,083 + HMPREF1058_RS16235 0.88 -1.5
727,107 + -0.3

Or see this region's nucleotide sequence