Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16250 and HMPREF1058_RS16245 overlap by 1 nucleotides HMPREF1058_RS16245 and HMPREF1058_RS16240 are separated by 77 nucleotides HMPREF1058_RS16240 and HMPREF1058_RS16235 overlap by 4 nucleotides
HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177
_RS16250
HMPREF1058_RS16245: HMPREF1058_RS16245 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 724,177 to 724,998
_RS16245
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
HMPREF1058_RS16235: HMPREF1058_RS16235 - AMP-binding protein, at 726,128 to 727,213
_RS16235
Position (kb) 725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 724.145 kb on + strand at 724.146 kb on - strand at 724.146 kb on - strand at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.497 kb on + strand, within HMPREF1058_RS16245 at 724.616 kb on + strand, within HMPREF1058_RS16245 at 724.877 kb on + strand, within HMPREF1058_RS16245 at 724.878 kb on - strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.910 kb on - strand, within HMPREF1058_RS16245 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand at 725.256 kb on + strand, within HMPREF1058_RS16240 at 725.782 kb on + strand at 725.838 kb on + strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 726.041 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.308 kb on - strand, within HMPREF1058_RS16235 at 726.342 kb on - strand, within HMPREF1058_RS16235 at 726.427 kb on + strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.466 kb on - strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.834 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 727.083 kb on + strand, within HMPREF1058_RS16235 at 727.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 724,145 + -2.7 724,146 - -3.7 724,146 - -1.0 724,473 - HMPREF1058_RS16245 0.36 +1.0 724,473 - HMPREF1058_RS16245 0.36 -0.3 724,497 + HMPREF1058_RS16245 0.39 -0.2 724,616 + HMPREF1058_RS16245 0.53 -1.0 724,877 + HMPREF1058_RS16245 0.85 -3.4 724,878 - HMPREF1058_RS16245 0.85 -0.5 724,909 + HMPREF1058_RS16245 0.89 +0.4 724,909 + HMPREF1058_RS16245 0.89 -0.4 724,910 - HMPREF1058_RS16245 0.89 -0.9 725,143 + -2.9 725,143 + -0.4 725,145 + -0.4 725,145 + -1.2 725,145 + -1.0 725,147 + -3.5 725,161 + -1.0 725,256 + HMPREF1058_RS16240 0.17 -1.3 725,782 + -0.5 725,838 + HMPREF1058_RS16240 0.72 -3.6 725,839 - HMPREF1058_RS16240 0.72 -1.5 725,839 - HMPREF1058_RS16240 0.72 -0.2 726,041 + -0.3 726,043 + -0.7 726,044 - -1.6 726,044 - -0.6 726,044 - +0.8 726,308 - HMPREF1058_RS16235 0.17 -0.8 726,342 - HMPREF1058_RS16235 0.20 -0.9 726,427 + HMPREF1058_RS16235 0.28 -1.2 726,428 - HMPREF1058_RS16235 0.28 +0.7 726,428 - HMPREF1058_RS16235 0.28 +0.1 726,441 - HMPREF1058_RS16235 0.29 -0.7 726,441 - HMPREF1058_RS16235 0.29 -0.6 726,465 + HMPREF1058_RS16235 0.31 -1.3 726,465 + HMPREF1058_RS16235 0.31 -0.9 726,466 - HMPREF1058_RS16235 0.31 +0.8 726,833 + HMPREF1058_RS16235 0.65 -0.8 726,833 + HMPREF1058_RS16235 0.65 -2.3 726,834 - HMPREF1058_RS16235 0.65 -2.5 726,877 - HMPREF1058_RS16235 0.69 -1.7 726,877 - HMPREF1058_RS16235 0.69 -0.7 726,877 - HMPREF1058_RS16235 0.69 -0.4 726,961 - HMPREF1058_RS16235 0.77 -0.8 726,961 - HMPREF1058_RS16235 0.77 -0.7 727,083 + HMPREF1058_RS16235 0.88 -1.5 727,107 + -0.3
Or see this region's nucleotide sequence