Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15580 and HMPREF1058_RS15575 are separated by 9 nucleotides HMPREF1058_RS15575 and HMPREF1058_RS15570 are separated by 72 nucleotides
HMPREF1058_RS15580: HMPREF1058_RS15580 - Gfo/Idh/MocA family oxidoreductase, at 882,653 to 883,642
_RS15580
HMPREF1058_RS15575: HMPREF1058_RS15575 - DUF4421 domain-containing protein, at 883,652 to 884,779
_RS15575
HMPREF1058_RS15570: HMPREF1058_RS15570 - hypothetical protein, at 884,852 to 886,423
_RS15570
Position (kb) 883
884
885 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 882.672 kb on + strand at 882.844 kb on - strand, within HMPREF1058_RS15580 at 882.868 kb on + strand, within HMPREF1058_RS15580 at 882.868 kb on + strand, within HMPREF1058_RS15580 at 882.872 kb on + strand, within HMPREF1058_RS15580 at 882.873 kb on - strand, within HMPREF1058_RS15580 at 882.877 kb on - strand, within HMPREF1058_RS15580 at 883.035 kb on - strand, within HMPREF1058_RS15580 at 883.043 kb on + strand, within HMPREF1058_RS15580 at 883.052 kb on + strand, within HMPREF1058_RS15580 at 883.110 kb on + strand, within HMPREF1058_RS15580 at 883.111 kb on - strand, within HMPREF1058_RS15580 at 883.117 kb on - strand, within HMPREF1058_RS15580 at 883.177 kb on - strand, within HMPREF1058_RS15580 at 883.246 kb on + strand, within HMPREF1058_RS15580 at 883.300 kb on - strand, within HMPREF1058_RS15580 at 883.300 kb on - strand at 883.315 kb on + strand, within HMPREF1058_RS15580 at 883.474 kb on + strand, within HMPREF1058_RS15580 at 883.522 kb on - strand, within HMPREF1058_RS15580 at 883.548 kb on + strand at 883.625 kb on - strand at 883.627 kb on + strand at 883.708 kb on - strand at 883.741 kb on - strand at 883.765 kb on + strand, within HMPREF1058_RS15575 at 883.858 kb on + strand, within HMPREF1058_RS15575 at 883.917 kb on - strand, within HMPREF1058_RS15575 at 884.132 kb on + strand, within HMPREF1058_RS15575 at 884.160 kb on + strand, within HMPREF1058_RS15575 at 884.349 kb on - strand, within HMPREF1058_RS15575 at 884.365 kb on - strand, within HMPREF1058_RS15575 at 884.365 kb on - strand, within HMPREF1058_RS15575 at 884.627 kb on + strand, within HMPREF1058_RS15575 at 884.642 kb on + strand, within HMPREF1058_RS15575 at 884.649 kb on + strand, within HMPREF1058_RS15575 at 884.650 kb on - strand, within HMPREF1058_RS15575 at 884.672 kb on - strand at 884.675 kb on + strand at 884.676 kb on - strand at 884.710 kb on + strand at 884.711 kb on - strand at 884.730 kb on + strand at 884.730 kb on + strand at 884.731 kb on - strand at 884.731 kb on - strand at 884.784 kb on + strand at 884.816 kb on - strand at 884.826 kb on - strand at 884.830 kb on - strand at 884.830 kb on - strand at 884.830 kb on - strand at 884.831 kb on + strand at 884.835 kb on - strand at 884.906 kb on - strand at 884.921 kb on + strand at 884.924 kb on - strand at 884.952 kb on + strand at 884.952 kb on + strand at 884.953 kb on - strand at 884.953 kb on - strand at 884.953 kb on - strand at 884.956 kb on + strand at 884.956 kb on + strand at 884.961 kb on + strand at 884.962 kb on - strand at 884.962 kb on - strand at 884.965 kb on + strand at 884.966 kb on - strand at 884.987 kb on + strand at 884.988 kb on - strand at 885.016 kb on + strand, within HMPREF1058_RS15570 at 885.017 kb on - strand, within HMPREF1058_RS15570 at 885.017 kb on - strand, within HMPREF1058_RS15570 at 885.023 kb on - strand, within HMPREF1058_RS15570 at 885.023 kb on - strand, within HMPREF1058_RS15570 at 885.028 kb on + strand, within HMPREF1058_RS15570 at 885.037 kb on + strand, within HMPREF1058_RS15570 at 885.041 kb on - strand, within HMPREF1058_RS15570 at 885.062 kb on - strand, within HMPREF1058_RS15570 at 885.063 kb on + strand, within HMPREF1058_RS15570 at 885.064 kb on - strand, within HMPREF1058_RS15570 at 885.065 kb on + strand, within HMPREF1058_RS15570 at 885.081 kb on + strand, within HMPREF1058_RS15570 at 885.082 kb on - strand, within HMPREF1058_RS15570 at 885.115 kb on + strand, within HMPREF1058_RS15570 at 885.115 kb on + strand, within HMPREF1058_RS15570 at 885.115 kb on + strand, within HMPREF1058_RS15570 at 885.193 kb on - strand, within HMPREF1058_RS15570 at 885.206 kb on - strand, within HMPREF1058_RS15570 at 885.284 kb on + strand, within HMPREF1058_RS15570 at 885.308 kb on - strand, within HMPREF1058_RS15570 at 885.308 kb on - strand, within HMPREF1058_RS15570 at 885.340 kb on + strand, within HMPREF1058_RS15570 at 885.341 kb on - strand, within HMPREF1058_RS15570 at 885.343 kb on + strand, within HMPREF1058_RS15570 at 885.343 kb on + strand, within HMPREF1058_RS15570 at 885.357 kb on + strand, within HMPREF1058_RS15570 at 885.358 kb on - strand, within HMPREF1058_RS15570 at 885.372 kb on + strand, within HMPREF1058_RS15570 at 885.411 kb on + strand, within HMPREF1058_RS15570 at 885.412 kb on - strand, within HMPREF1058_RS15570 at 885.429 kb on - strand, within HMPREF1058_RS15570 at 885.457 kb on - strand, within HMPREF1058_RS15570 at 885.474 kb on + strand, within HMPREF1058_RS15570 at 885.475 kb on - strand, within HMPREF1058_RS15570 at 885.526 kb on + strand, within HMPREF1058_RS15570 at 885.527 kb on - strand, within HMPREF1058_RS15570 at 885.533 kb on + strand, within HMPREF1058_RS15570 at 885.534 kb on - strand, within HMPREF1058_RS15570 at 885.560 kb on - strand, within HMPREF1058_RS15570 at 885.583 kb on - strand, within HMPREF1058_RS15570 at 885.595 kb on + strand, within HMPREF1058_RS15570 at 885.595 kb on + strand, within HMPREF1058_RS15570 at 885.595 kb on + strand, within HMPREF1058_RS15570 at 885.596 kb on - strand, within HMPREF1058_RS15570 at 885.642 kb on + strand, within HMPREF1058_RS15570 at 885.649 kb on + strand, within HMPREF1058_RS15570 at 885.660 kb on + strand, within HMPREF1058_RS15570 at 885.673 kb on - strand, within HMPREF1058_RS15570 at 885.673 kb on - strand, within HMPREF1058_RS15570 at 885.673 kb on - strand, within HMPREF1058_RS15570 at 885.673 kb on - strand, within HMPREF1058_RS15570 at 885.696 kb on + strand, within HMPREF1058_RS15570 at 885.697 kb on - strand, within HMPREF1058_RS15570 at 885.704 kb on - strand, within HMPREF1058_RS15570 at 885.704 kb on - strand, within HMPREF1058_RS15570 at 885.745 kb on + strand, within HMPREF1058_RS15570 at 885.773 kb on - strand, within HMPREF1058_RS15570
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 882,672 + -1.7 882,844 - HMPREF1058_RS15580 0.19 -1.8 882,868 + HMPREF1058_RS15580 0.22 +0.7 882,868 + HMPREF1058_RS15580 0.22 -0.2 882,872 + HMPREF1058_RS15580 0.22 +0.1 882,873 - HMPREF1058_RS15580 0.22 -1.8 882,877 - HMPREF1058_RS15580 0.23 -3.1 883,035 - HMPREF1058_RS15580 0.39 -0.5 883,043 + HMPREF1058_RS15580 0.39 +0.1 883,052 + HMPREF1058_RS15580 0.40 -1.5 883,110 + HMPREF1058_RS15580 0.46 -0.5 883,111 - HMPREF1058_RS15580 0.46 -1.4 883,117 - HMPREF1058_RS15580 0.47 -2.9 883,177 - HMPREF1058_RS15580 0.53 -0.8 883,246 + HMPREF1058_RS15580 0.60 -1.2 883,300 - HMPREF1058_RS15580 0.65 -0.3 883,300 - -1.4 883,315 + HMPREF1058_RS15580 0.67 -0.4 883,474 + HMPREF1058_RS15580 0.83 -1.2 883,522 - HMPREF1058_RS15580 0.88 -1.4 883,548 + -1.3 883,625 - -0.2 883,627 + +0.6 883,708 - -1.4 883,741 - -0.5 883,765 + HMPREF1058_RS15575 0.10 -2.4 883,858 + HMPREF1058_RS15575 0.18 -2.2 883,917 - HMPREF1058_RS15575 0.23 -1.4 884,132 + HMPREF1058_RS15575 0.43 -1.0 884,160 + HMPREF1058_RS15575 0.45 -0.7 884,349 - HMPREF1058_RS15575 0.62 -3.2 884,365 - HMPREF1058_RS15575 0.63 -0.8 884,365 - HMPREF1058_RS15575 0.63 -2.2 884,627 + HMPREF1058_RS15575 0.86 -1.7 884,642 + HMPREF1058_RS15575 0.88 -2.3 884,649 + HMPREF1058_RS15575 0.88 -1.7 884,650 - HMPREF1058_RS15575 0.88 -1.0 884,672 - -1.1 884,675 + -2.1 884,676 - -0.6 884,710 + -4.1 884,711 - -2.0 884,730 + -2.0 884,730 + -3.6 884,731 - -1.1 884,731 - -2.0 884,784 + -0.5 884,816 - -1.1 884,826 - -1.5 884,830 - -2.1 884,830 - -1.0 884,830 - -2.5 884,831 + -0.9 884,835 - -1.5 884,906 - -2.1 884,921 + -2.1 884,924 - -3.1 884,952 + -3.5 884,952 + -1.9 884,953 - -0.0 884,953 - -1.7 884,953 - -2.2 884,956 + -3.6 884,956 + -3.8 884,961 + -1.7 884,962 - -3.1 884,962 - -1.3 884,965 + -1.2 884,966 - -2.4 884,987 + -2.7 884,988 - +1.8 885,016 + HMPREF1058_RS15570 0.10 -0.6 885,017 - HMPREF1058_RS15570 0.10 -2.4 885,017 - HMPREF1058_RS15570 0.10 -2.8 885,023 - HMPREF1058_RS15570 0.11 -3.7 885,023 - HMPREF1058_RS15570 0.11 -3.4 885,028 + HMPREF1058_RS15570 0.11 -3.0 885,037 + HMPREF1058_RS15570 0.12 -0.8 885,041 - HMPREF1058_RS15570 0.12 -1.0 885,062 - HMPREF1058_RS15570 0.13 -3.4 885,063 + HMPREF1058_RS15570 0.13 -2.1 885,064 - HMPREF1058_RS15570 0.13 -2.6 885,065 + HMPREF1058_RS15570 0.14 -2.0 885,081 + HMPREF1058_RS15570 0.15 -2.4 885,082 - HMPREF1058_RS15570 0.15 -3.9 885,115 + HMPREF1058_RS15570 0.17 -2.3 885,115 + HMPREF1058_RS15570 0.17 -3.1 885,115 + HMPREF1058_RS15570 0.17 -2.1 885,193 - HMPREF1058_RS15570 0.22 -0.8 885,206 - HMPREF1058_RS15570 0.23 -3.7 885,284 + HMPREF1058_RS15570 0.27 -2.5 885,308 - HMPREF1058_RS15570 0.29 -2.4 885,308 - HMPREF1058_RS15570 0.29 -2.9 885,340 + HMPREF1058_RS15570 0.31 -1.7 885,341 - HMPREF1058_RS15570 0.31 -2.0 885,343 + HMPREF1058_RS15570 0.31 -0.4 885,343 + HMPREF1058_RS15570 0.31 -0.8 885,357 + HMPREF1058_RS15570 0.32 -1.7 885,358 - HMPREF1058_RS15570 0.32 -2.2 885,372 + HMPREF1058_RS15570 0.33 -0.9 885,411 + HMPREF1058_RS15570 0.36 -1.3 885,412 - HMPREF1058_RS15570 0.36 -2.1 885,429 - HMPREF1058_RS15570 0.37 -3.4 885,457 - HMPREF1058_RS15570 0.38 -2.6 885,474 + HMPREF1058_RS15570 0.40 -0.4 885,475 - HMPREF1058_RS15570 0.40 -2.2 885,526 + HMPREF1058_RS15570 0.43 -2.2 885,527 - HMPREF1058_RS15570 0.43 -1.7 885,533 + HMPREF1058_RS15570 0.43 -1.6 885,534 - HMPREF1058_RS15570 0.43 -1.9 885,560 - HMPREF1058_RS15570 0.45 -1.5 885,583 - HMPREF1058_RS15570 0.47 -1.4 885,595 + HMPREF1058_RS15570 0.47 -0.6 885,595 + HMPREF1058_RS15570 0.47 -2.1 885,595 + HMPREF1058_RS15570 0.47 -2.2 885,596 - HMPREF1058_RS15570 0.47 -2.1 885,642 + HMPREF1058_RS15570 0.50 -1.2 885,649 + HMPREF1058_RS15570 0.51 -2.0 885,660 + HMPREF1058_RS15570 0.51 -0.3 885,673 - HMPREF1058_RS15570 0.52 -0.4 885,673 - HMPREF1058_RS15570 0.52 -5.5 885,673 - HMPREF1058_RS15570 0.52 -2.6 885,673 - HMPREF1058_RS15570 0.52 -1.5 885,696 + HMPREF1058_RS15570 0.54 -1.8 885,697 - HMPREF1058_RS15570 0.54 -2.7 885,704 - HMPREF1058_RS15570 0.54 -3.2 885,704 - HMPREF1058_RS15570 0.54 -3.0 885,745 + HMPREF1058_RS15570 0.57 -4.0 885,773 - HMPREF1058_RS15570 0.59 -2.3
Or see this region's nucleotide sequence