Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13970

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS13975 and HMPREF1058_RS13970 are separated by 158 nucleotidesHMPREF1058_RS13970 and HMPREF1058_RS13965 are separated by 4 nucleotidesHMPREF1058_RS13965 and HMPREF1058_RS13960 are separated by 52 nucleotides HMPREF1058_RS13975: HMPREF1058_RS13975 - class I fructose-bisphosphate aldolase, at 1,315,752 to 1,316,804 _RS13975 HMPREF1058_RS13970: HMPREF1058_RS13970 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,316,963 to 1,318,192 _RS13970 HMPREF1058_RS13965: HMPREF1058_RS13965 - hypothetical protein, at 1,318,197 to 1,318,616 _RS13965 HMPREF1058_RS13960: HMPREF1058_RS13960 - metal ABC transporter permease, at 1,318,669 to 1,319,520 _RS13960 Position (kb) 1316 1317 1318 1319Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1315.982 kb on - strand, within HMPREF1058_RS13975at 1315.988 kb on + strand, within HMPREF1058_RS13975at 1315.989 kb on - strand, within HMPREF1058_RS13975at 1316.096 kb on - strand, within HMPREF1058_RS13975at 1316.098 kb on + strand, within HMPREF1058_RS13975at 1316.139 kb on - strand, within HMPREF1058_RS13975at 1316.150 kb on - strand, within HMPREF1058_RS13975at 1316.150 kb on - strand, within HMPREF1058_RS13975at 1316.172 kb on + strand, within HMPREF1058_RS13975at 1316.172 kb on + strand, within HMPREF1058_RS13975at 1316.242 kb on + strand, within HMPREF1058_RS13975at 1316.256 kb on + strand, within HMPREF1058_RS13975at 1316.257 kb on - strand, within HMPREF1058_RS13975at 1316.326 kb on + strand, within HMPREF1058_RS13975at 1316.345 kb on - strand, within HMPREF1058_RS13975at 1316.352 kb on + strand, within HMPREF1058_RS13975at 1316.352 kb on + strand, within HMPREF1058_RS13975at 1316.353 kb on - strand, within HMPREF1058_RS13975at 1316.357 kb on - strand, within HMPREF1058_RS13975at 1316.357 kb on - strand, within HMPREF1058_RS13975at 1316.386 kb on + strand, within HMPREF1058_RS13975at 1316.391 kb on + strand, within HMPREF1058_RS13975at 1316.391 kb on + strand, within HMPREF1058_RS13975at 1316.442 kb on - strand, within HMPREF1058_RS13975at 1316.492 kb on + strand, within HMPREF1058_RS13975at 1316.501 kb on + strand, within HMPREF1058_RS13975at 1316.579 kb on - strand, within HMPREF1058_RS13975at 1316.659 kb on + strand, within HMPREF1058_RS13975at 1316.678 kb on + strand, within HMPREF1058_RS13975at 1316.693 kb on + strand, within HMPREF1058_RS13975at 1316.704 kb on + strandat 1316.704 kb on + strandat 1316.714 kb on + strandat 1316.714 kb on + strandat 1316.715 kb on - strandat 1316.755 kb on + strandat 1316.755 kb on + strandat 1316.798 kb on - strandat 1316.798 kb on - strandat 1316.803 kb on - strandat 1316.812 kb on + strandat 1316.814 kb on + strandat 1316.891 kb on + strandat 1316.892 kb on - strandat 1316.905 kb on + strandat 1316.906 kb on - strandat 1316.908 kb on + strandat 1316.916 kb on + strandat 1316.950 kb on + strandat 1316.953 kb on + strandat 1316.953 kb on + strandat 1316.953 kb on + strandat 1316.957 kb on + strandat 1316.957 kb on + strandat 1317.031 kb on + strandat 1317.403 kb on + strand, within HMPREF1058_RS13970at 1317.414 kb on + strand, within HMPREF1058_RS13970at 1317.430 kb on + strand, within HMPREF1058_RS13970at 1317.575 kb on + strand, within HMPREF1058_RS13970at 1317.623 kb on + strand, within HMPREF1058_RS13970at 1317.954 kb on + strand, within HMPREF1058_RS13970at 1317.959 kb on + strand, within HMPREF1058_RS13970at 1317.963 kb on + strand, within HMPREF1058_RS13970at 1318.142 kb on + strandat 1318.180 kb on - strandat 1318.188 kb on + strandat 1318.190 kb on + strandat 1318.258 kb on + strand, within HMPREF1058_RS13965at 1318.259 kb on - strand, within HMPREF1058_RS13965at 1318.408 kb on - strand, within HMPREF1058_RS13965at 1318.458 kb on - strand, within HMPREF1058_RS13965at 1318.553 kb on - strand, within HMPREF1058_RS13965at 1318.595 kb on - strandat 1318.675 kb on - strandat 1318.676 kb on + strandat 1318.695 kb on + strandat 1318.696 kb on - strandat 1318.696 kb on - strandat 1318.763 kb on - strand, within HMPREF1058_RS13960at 1318.763 kb on - strand, within HMPREF1058_RS13960at 1318.840 kb on + strand, within HMPREF1058_RS13960at 1318.860 kb on - strand, within HMPREF1058_RS13960at 1318.926 kb on + strand, within HMPREF1058_RS13960at 1318.977 kb on - strand, within HMPREF1058_RS13960at 1318.977 kb on - strand, within HMPREF1058_RS13960at 1318.980 kb on + strand, within HMPREF1058_RS13960at 1319.105 kb on + strand, within HMPREF1058_RS13960at 1319.106 kb on - strand, within HMPREF1058_RS13960at 1319.176 kb on - strand, within HMPREF1058_RS13960

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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1,315,982 - HMPREF1058_RS13975 0.22 +0.3
1,315,988 + HMPREF1058_RS13975 0.22 -0.5
1,315,989 - HMPREF1058_RS13975 0.23 -0.7
1,316,096 - HMPREF1058_RS13975 0.33 +0.2
1,316,098 + HMPREF1058_RS13975 0.33 +0.0
1,316,139 - HMPREF1058_RS13975 0.37 +0.8
1,316,150 - HMPREF1058_RS13975 0.38 -1.2
1,316,150 - HMPREF1058_RS13975 0.38 +0.2
1,316,172 + HMPREF1058_RS13975 0.40 -0.5
1,316,172 + HMPREF1058_RS13975 0.40 +0.0
1,316,242 + HMPREF1058_RS13975 0.47 +0.2
1,316,256 + HMPREF1058_RS13975 0.48 -0.3
1,316,257 - HMPREF1058_RS13975 0.48 +0.3
1,316,326 + HMPREF1058_RS13975 0.55 -0.9
1,316,345 - HMPREF1058_RS13975 0.56 +1.2
1,316,352 + HMPREF1058_RS13975 0.57 +0.5
1,316,352 + HMPREF1058_RS13975 0.57 +0.5
1,316,353 - HMPREF1058_RS13975 0.57 +0.7
1,316,357 - HMPREF1058_RS13975 0.57 +0.4
1,316,357 - HMPREF1058_RS13975 0.57 +0.4
1,316,386 + HMPREF1058_RS13975 0.60 +0.6
1,316,391 + HMPREF1058_RS13975 0.61 -1.7
1,316,391 + HMPREF1058_RS13975 0.61 -1.0
1,316,442 - HMPREF1058_RS13975 0.66 -0.1
1,316,492 + HMPREF1058_RS13975 0.70 -0.2
1,316,501 + HMPREF1058_RS13975 0.71 +0.2
1,316,579 - HMPREF1058_RS13975 0.79 -0.7
1,316,659 + HMPREF1058_RS13975 0.86 +0.4
1,316,678 + HMPREF1058_RS13975 0.88 -1.4
1,316,693 + HMPREF1058_RS13975 0.89 +0.0
1,316,704 + -1.2
1,316,704 + +0.6
1,316,714 + +0.4
1,316,714 + -0.9
1,316,715 - +1.0
1,316,755 + +1.0
1,316,755 + -2.0
1,316,798 - +0.2
1,316,798 - -2.0
1,316,803 - +1.8
1,316,812 + -1.7
1,316,814 + -0.5
1,316,891 + -0.4
1,316,892 - -4.3
1,316,905 + -0.3
1,316,906 - -5.0
1,316,908 + +0.7
1,316,916 + +0.6
1,316,950 + -2.0
1,316,953 + -4.7
1,316,953 + -3.5
1,316,953 + -3.8
1,316,957 + -4.4
1,316,957 + -5.0
1,317,031 + -0.2
1,317,403 + HMPREF1058_RS13970 0.36 -2.7
1,317,414 + HMPREF1058_RS13970 0.37 +0.2
1,317,430 + HMPREF1058_RS13970 0.38 -1.8
1,317,575 + HMPREF1058_RS13970 0.50 -2.4
1,317,623 + HMPREF1058_RS13970 0.54 -0.5
1,317,954 + HMPREF1058_RS13970 0.81 -1.5
1,317,959 + HMPREF1058_RS13970 0.81 -1.8
1,317,963 + HMPREF1058_RS13970 0.81 -0.8
1,318,142 + +0.2
1,318,180 - -1.3
1,318,188 + -0.6
1,318,190 + +0.8
1,318,258 + HMPREF1058_RS13965 0.15 -1.4
1,318,259 - HMPREF1058_RS13965 0.15 -0.4
1,318,408 - HMPREF1058_RS13965 0.50 +0.8
1,318,458 - HMPREF1058_RS13965 0.62 -1.4
1,318,553 - HMPREF1058_RS13965 0.85 -2.4
1,318,595 - -0.5
1,318,675 - +0.5
1,318,676 + +0.2
1,318,695 + -0.8
1,318,696 - -0.9
1,318,696 - +1.0
1,318,763 - HMPREF1058_RS13960 0.11 +0.9
1,318,763 - HMPREF1058_RS13960 0.11 +1.5
1,318,840 + HMPREF1058_RS13960 0.20 -0.4
1,318,860 - HMPREF1058_RS13960 0.22 -2.7
1,318,926 + HMPREF1058_RS13960 0.30 +0.6
1,318,977 - HMPREF1058_RS13960 0.36 +0.5
1,318,977 - HMPREF1058_RS13960 0.36 +2.8
1,318,980 + HMPREF1058_RS13960 0.37 -0.3
1,319,105 + HMPREF1058_RS13960 0.51 -0.4
1,319,106 - HMPREF1058_RS13960 0.51 -0.4
1,319,176 - HMPREF1058_RS13960 0.60 +0.6

Or see this region's nucleotide sequence