Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13655

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20555 and HMPREF1058_RS13655 are separated by 362 nucleotidesHMPREF1058_RS13655 and HMPREF1058_RS13650 are separated by 355 nucleotides HMPREF1058_RS20555: HMPREF1058_RS20555 - left-handed beta-roll domain-containing protein, at 1,408,359 to 1,408,460 _RS20555 HMPREF1058_RS13655: HMPREF1058_RS13655 - cardiolipin synthase, at 1,408,823 to 1,410,118 _RS13655 HMPREF1058_RS13650: HMPREF1058_RS13650 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,410,474 to 1,411,427 _RS13650 Position (kb) 1408 1409 1410 1411Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1407.899 kb on - strandat 1407.933 kb on + strandat 1408.029 kb on + strandat 1408.046 kb on - strandat 1408.155 kb on + strandat 1408.230 kb on + strandat 1408.230 kb on + strandat 1408.230 kb on + strandat 1408.230 kb on + strandat 1408.231 kb on - strandat 1408.231 kb on - strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.234 kb on + strandat 1408.235 kb on - strandat 1408.235 kb on - strandat 1408.235 kb on - strandat 1408.238 kb on + strandat 1408.238 kb on + strandat 1408.239 kb on - strandat 1408.239 kb on - strandat 1408.240 kb on + strandat 1408.240 kb on + strandat 1408.250 kb on + strandat 1408.252 kb on + strandat 1408.252 kb on + strandat 1408.253 kb on - strandat 1408.255 kb on + strandat 1408.255 kb on + strandat 1408.261 kb on + strandat 1408.261 kb on + strandat 1408.271 kb on - strandat 1408.275 kb on + strandat 1408.276 kb on - strandat 1408.302 kb on + strandat 1408.337 kb on - strandat 1408.376 kb on - strand, within HMPREF1058_RS20555at 1408.450 kb on + strandat 1408.759 kb on + strandat 1408.760 kb on - strandat 1408.791 kb on + strandat 1408.791 kb on + strandat 1408.791 kb on + strandat 1408.792 kb on - strandat 1408.850 kb on + strandat 1408.851 kb on - strandat 1408.863 kb on + strandat 1408.921 kb on + strandat 1408.923 kb on + strandat 1408.923 kb on + strandat 1408.924 kb on - strandat 1409.103 kb on - strand, within HMPREF1058_RS13655at 1409.244 kb on + strand, within HMPREF1058_RS13655at 1409.303 kb on + strand, within HMPREF1058_RS13655at 1409.303 kb on + strand, within HMPREF1058_RS13655at 1409.344 kb on - strand, within HMPREF1058_RS13655at 1409.350 kb on - strand, within HMPREF1058_RS13655at 1409.367 kb on - strand, within HMPREF1058_RS13655at 1409.393 kb on + strand, within HMPREF1058_RS13655at 1409.393 kb on + strand, within HMPREF1058_RS13655at 1409.394 kb on - strand, within HMPREF1058_RS13655at 1409.396 kb on + strand, within HMPREF1058_RS13655at 1409.397 kb on - strand, within HMPREF1058_RS13655at 1409.397 kb on - strand, within HMPREF1058_RS13655at 1409.399 kb on - strand, within HMPREF1058_RS13655at 1409.401 kb on - strand, within HMPREF1058_RS13655at 1409.401 kb on - strand, within HMPREF1058_RS13655at 1409.401 kb on - strand, within HMPREF1058_RS13655at 1409.520 kb on + strand, within HMPREF1058_RS13655at 1409.521 kb on - strand, within HMPREF1058_RS13655at 1409.534 kb on + strand, within HMPREF1058_RS13655at 1409.572 kb on + strand, within HMPREF1058_RS13655at 1409.580 kb on + strand, within HMPREF1058_RS13655at 1409.581 kb on - strand, within HMPREF1058_RS13655at 1409.633 kb on + strand, within HMPREF1058_RS13655at 1409.633 kb on + strand, within HMPREF1058_RS13655at 1409.634 kb on - strand, within HMPREF1058_RS13655at 1409.662 kb on + strand, within HMPREF1058_RS13655at 1409.668 kb on - strand, within HMPREF1058_RS13655at 1409.718 kb on + strand, within HMPREF1058_RS13655at 1409.806 kb on + strand, within HMPREF1058_RS13655at 1409.806 kb on + strand, within HMPREF1058_RS13655at 1409.807 kb on - strand, within HMPREF1058_RS13655at 1409.844 kb on - strand, within HMPREF1058_RS13655at 1409.850 kb on - strand, within HMPREF1058_RS13655at 1409.949 kb on - strand, within HMPREF1058_RS13655at 1410.053 kb on - strandat 1410.114 kb on + strandat 1410.114 kb on + strandat 1410.116 kb on + strandat 1410.197 kb on - strandat 1410.210 kb on + strandat 1410.250 kb on - strandat 1410.315 kb on + strandat 1410.315 kb on + strandat 1410.343 kb on + strandat 1410.360 kb on + strandat 1410.481 kb on + strandat 1410.581 kb on + strand, within HMPREF1058_RS13650at 1410.737 kb on + strand, within HMPREF1058_RS13650at 1410.739 kb on + strand, within HMPREF1058_RS13650at 1410.755 kb on + strand, within HMPREF1058_RS13650at 1410.792 kb on + strand, within HMPREF1058_RS13650at 1410.792 kb on + strand, within HMPREF1058_RS13650at 1410.802 kb on + strand, within HMPREF1058_RS13650at 1410.838 kb on + strand, within HMPREF1058_RS13650at 1410.894 kb on + strand, within HMPREF1058_RS13650at 1410.907 kb on + strand, within HMPREF1058_RS13650at 1410.973 kb on + strand, within HMPREF1058_RS13650at 1411.053 kb on + strand, within HMPREF1058_RS13650at 1411.089 kb on + strand, within HMPREF1058_RS13650

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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1,407,899 - +0.4
1,407,933 + -0.2
1,408,029 + -1.4
1,408,046 - +0.1
1,408,155 + -0.4
1,408,230 + -1.1
1,408,230 + -1.8
1,408,230 + +1.8
1,408,230 + -0.1
1,408,231 - +0.6
1,408,231 - -1.2
1,408,234 + -0.5
1,408,234 + +0.8
1,408,234 + +1.3
1,408,234 + -1.0
1,408,234 + +2.2
1,408,234 + +0.5
1,408,234 + +0.6
1,408,234 + +0.5
1,408,234 + +0.4
1,408,235 - +0.1
1,408,235 - +1.7
1,408,235 - +0.4
1,408,238 + -0.4
1,408,238 + -1.2
1,408,239 - -0.3
1,408,239 - +0.4
1,408,240 + -0.2
1,408,240 + +0.4
1,408,250 + +0.1
1,408,252 + -0.1
1,408,252 + -1.0
1,408,253 - +0.0
1,408,255 + +1.2
1,408,255 + +0.5
1,408,261 + +0.5
1,408,261 + +2.9
1,408,271 - -1.1
1,408,275 + +0.6
1,408,276 - +0.3
1,408,302 + +0.7
1,408,337 - +1.6
1,408,376 - HMPREF1058_RS20555 0.17 +0.1
1,408,450 + -0.3
1,408,759 + -0.0
1,408,760 - -0.7
1,408,791 + -1.2
1,408,791 + +1.2
1,408,791 + +1.6
1,408,792 - -2.7
1,408,850 + -2.4
1,408,851 - +1.8
1,408,863 + -3.6
1,408,921 + -4.7
1,408,923 + -4.8
1,408,923 + -3.4
1,408,924 - -1.4
1,409,103 - HMPREF1058_RS13655 0.22 -3.9
1,409,244 + HMPREF1058_RS13655 0.32 -2.2
1,409,303 + HMPREF1058_RS13655 0.37 -4.3
1,409,303 + HMPREF1058_RS13655 0.37 -4.3
1,409,344 - HMPREF1058_RS13655 0.40 -2.8
1,409,350 - HMPREF1058_RS13655 0.41 -4.9
1,409,367 - HMPREF1058_RS13655 0.42 -3.3
1,409,393 + HMPREF1058_RS13655 0.44 -4.2
1,409,393 + HMPREF1058_RS13655 0.44 -3.5
1,409,394 - HMPREF1058_RS13655 0.44 -4.0
1,409,396 + HMPREF1058_RS13655 0.44 -5.4
1,409,397 - HMPREF1058_RS13655 0.44 -2.4
1,409,397 - HMPREF1058_RS13655 0.44 -3.3
1,409,399 - HMPREF1058_RS13655 0.44 -3.5
1,409,401 - HMPREF1058_RS13655 0.45 -4.6
1,409,401 - HMPREF1058_RS13655 0.45 -2.7
1,409,401 - HMPREF1058_RS13655 0.45 -2.7
1,409,520 + HMPREF1058_RS13655 0.54 -5.3
1,409,521 - HMPREF1058_RS13655 0.54 -6.1
1,409,534 + HMPREF1058_RS13655 0.55 -3.3
1,409,572 + HMPREF1058_RS13655 0.58 -0.5
1,409,580 + HMPREF1058_RS13655 0.58 -1.9
1,409,581 - HMPREF1058_RS13655 0.58 -2.7
1,409,633 + HMPREF1058_RS13655 0.62 -4.0
1,409,633 + HMPREF1058_RS13655 0.62 -4.3
1,409,634 - HMPREF1058_RS13655 0.63 -3.1
1,409,662 + HMPREF1058_RS13655 0.65 -1.7
1,409,668 - HMPREF1058_RS13655 0.65 -4.0
1,409,718 + HMPREF1058_RS13655 0.69 -5.0
1,409,806 + HMPREF1058_RS13655 0.76 -2.1
1,409,806 + HMPREF1058_RS13655 0.76 -3.3
1,409,807 - HMPREF1058_RS13655 0.76 -4.3
1,409,844 - HMPREF1058_RS13655 0.79 -3.2
1,409,850 - HMPREF1058_RS13655 0.79 -1.5
1,409,949 - HMPREF1058_RS13655 0.87 -2.5
1,410,053 - -4.5
1,410,114 + -2.7
1,410,114 + -2.0
1,410,116 + -1.2
1,410,197 - +0.7
1,410,210 + -0.7
1,410,250 - -0.2
1,410,315 + +0.8
1,410,315 + -0.1
1,410,343 + +1.5
1,410,360 + -0.7
1,410,481 + -1.4
1,410,581 + HMPREF1058_RS13650 0.11 +1.8
1,410,737 + HMPREF1058_RS13650 0.28 +0.5
1,410,739 + HMPREF1058_RS13650 0.28 +0.5
1,410,755 + HMPREF1058_RS13650 0.29 +0.1
1,410,792 + HMPREF1058_RS13650 0.33 -0.7
1,410,792 + HMPREF1058_RS13650 0.33 +0.3
1,410,802 + HMPREF1058_RS13650 0.34 +0.3
1,410,838 + HMPREF1058_RS13650 0.38 +0.6
1,410,894 + HMPREF1058_RS13650 0.44 -1.5
1,410,907 + HMPREF1058_RS13650 0.45 +0.9
1,410,973 + HMPREF1058_RS13650 0.52 -0.5
1,411,053 + HMPREF1058_RS13650 0.61 +0.5
1,411,089 + HMPREF1058_RS13650 0.64 -1.3

Or see this region's nucleotide sequence