Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20555 and HMPREF1058_RS13655 are separated by 362 nucleotides HMPREF1058_RS13655 and HMPREF1058_RS13650 are separated by 355 nucleotides
HMPREF1058_RS20555: HMPREF1058_RS20555 - left-handed beta-roll domain-containing protein, at 1,408,359 to 1,408,460
_RS20555
HMPREF1058_RS13655: HMPREF1058_RS13655 - cardiolipin synthase, at 1,408,823 to 1,410,118
_RS13655
HMPREF1058_RS13650: HMPREF1058_RS13650 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,410,474 to 1,411,427
_RS13650
Position (kb)
1408
1409
1410
1411 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1407.899 kb on - strand at 1407.933 kb on + strand at 1408.029 kb on + strand at 1408.046 kb on - strand at 1408.155 kb on + strand at 1408.230 kb on + strand at 1408.230 kb on + strand at 1408.230 kb on + strand at 1408.230 kb on + strand at 1408.231 kb on - strand at 1408.231 kb on - strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.234 kb on + strand at 1408.235 kb on - strand at 1408.235 kb on - strand at 1408.235 kb on - strand at 1408.238 kb on + strand at 1408.238 kb on + strand at 1408.239 kb on - strand at 1408.239 kb on - strand at 1408.240 kb on + strand at 1408.240 kb on + strand at 1408.250 kb on + strand at 1408.252 kb on + strand at 1408.252 kb on + strand at 1408.253 kb on - strand at 1408.255 kb on + strand at 1408.255 kb on + strand at 1408.261 kb on + strand at 1408.261 kb on + strand at 1408.271 kb on - strand at 1408.275 kb on + strand at 1408.276 kb on - strand at 1408.302 kb on + strand at 1408.337 kb on - strand at 1408.376 kb on - strand, within HMPREF1058_RS20555 at 1408.450 kb on + strand at 1408.759 kb on + strand at 1408.760 kb on - strand at 1408.791 kb on + strand at 1408.791 kb on + strand at 1408.791 kb on + strand at 1408.792 kb on - strand at 1408.850 kb on + strand at 1408.851 kb on - strand at 1408.863 kb on + strand at 1408.921 kb on + strand at 1408.923 kb on + strand at 1408.923 kb on + strand at 1408.924 kb on - strand at 1409.103 kb on - strand, within HMPREF1058_RS13655 at 1409.244 kb on + strand, within HMPREF1058_RS13655 at 1409.303 kb on + strand, within HMPREF1058_RS13655 at 1409.303 kb on + strand, within HMPREF1058_RS13655 at 1409.344 kb on - strand, within HMPREF1058_RS13655 at 1409.350 kb on - strand, within HMPREF1058_RS13655 at 1409.367 kb on - strand, within HMPREF1058_RS13655 at 1409.393 kb on + strand, within HMPREF1058_RS13655 at 1409.393 kb on + strand, within HMPREF1058_RS13655 at 1409.394 kb on - strand, within HMPREF1058_RS13655 at 1409.396 kb on + strand, within HMPREF1058_RS13655 at 1409.397 kb on - strand, within HMPREF1058_RS13655 at 1409.397 kb on - strand, within HMPREF1058_RS13655 at 1409.399 kb on - strand, within HMPREF1058_RS13655 at 1409.401 kb on - strand, within HMPREF1058_RS13655 at 1409.401 kb on - strand, within HMPREF1058_RS13655 at 1409.401 kb on - strand, within HMPREF1058_RS13655 at 1409.520 kb on + strand, within HMPREF1058_RS13655 at 1409.521 kb on - strand, within HMPREF1058_RS13655 at 1409.534 kb on + strand, within HMPREF1058_RS13655 at 1409.572 kb on + strand, within HMPREF1058_RS13655 at 1409.580 kb on + strand, within HMPREF1058_RS13655 at 1409.581 kb on - strand, within HMPREF1058_RS13655 at 1409.633 kb on + strand, within HMPREF1058_RS13655 at 1409.633 kb on + strand, within HMPREF1058_RS13655 at 1409.634 kb on - strand, within HMPREF1058_RS13655 at 1409.662 kb on + strand, within HMPREF1058_RS13655 at 1409.668 kb on - strand, within HMPREF1058_RS13655 at 1409.718 kb on + strand, within HMPREF1058_RS13655 at 1409.806 kb on + strand, within HMPREF1058_RS13655 at 1409.806 kb on + strand, within HMPREF1058_RS13655 at 1409.807 kb on - strand, within HMPREF1058_RS13655 at 1409.844 kb on - strand, within HMPREF1058_RS13655 at 1409.850 kb on - strand, within HMPREF1058_RS13655 at 1409.949 kb on - strand, within HMPREF1058_RS13655 at 1410.053 kb on - strand at 1410.114 kb on + strand at 1410.114 kb on + strand at 1410.116 kb on + strand at 1410.197 kb on - strand at 1410.210 kb on + strand at 1410.250 kb on - strand at 1410.315 kb on + strand at 1410.315 kb on + strand at 1410.343 kb on + strand at 1410.360 kb on + strand at 1410.481 kb on + strand at 1410.581 kb on + strand, within HMPREF1058_RS13650 at 1410.737 kb on + strand, within HMPREF1058_RS13650 at 1410.739 kb on + strand, within HMPREF1058_RS13650 at 1410.755 kb on + strand, within HMPREF1058_RS13650 at 1410.792 kb on + strand, within HMPREF1058_RS13650 at 1410.792 kb on + strand, within HMPREF1058_RS13650 at 1410.802 kb on + strand, within HMPREF1058_RS13650 at 1410.838 kb on + strand, within HMPREF1058_RS13650 at 1410.894 kb on + strand, within HMPREF1058_RS13650 at 1410.907 kb on + strand, within HMPREF1058_RS13650 at 1410.973 kb on + strand, within HMPREF1058_RS13650 at 1411.053 kb on + strand, within HMPREF1058_RS13650 at 1411.089 kb on + strand, within HMPREF1058_RS13650
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,407,899 - +0.4 1,407,933 + -0.2 1,408,029 + -1.4 1,408,046 - +0.1 1,408,155 + -0.4 1,408,230 + -1.1 1,408,230 + -1.8 1,408,230 + +1.8 1,408,230 + -0.1 1,408,231 - +0.6 1,408,231 - -1.2 1,408,234 + -0.5 1,408,234 + +0.8 1,408,234 + +1.3 1,408,234 + -1.0 1,408,234 + +2.2 1,408,234 + +0.5 1,408,234 + +0.6 1,408,234 + +0.5 1,408,234 + +0.4 1,408,235 - +0.1 1,408,235 - +1.7 1,408,235 - +0.4 1,408,238 + -0.4 1,408,238 + -1.2 1,408,239 - -0.3 1,408,239 - +0.4 1,408,240 + -0.2 1,408,240 + +0.4 1,408,250 + +0.1 1,408,252 + -0.1 1,408,252 + -1.0 1,408,253 - +0.0 1,408,255 + +1.2 1,408,255 + +0.5 1,408,261 + +0.5 1,408,261 + +2.9 1,408,271 - -1.1 1,408,275 + +0.6 1,408,276 - +0.3 1,408,302 + +0.7 1,408,337 - +1.6 1,408,376 - HMPREF1058_RS20555 0.17 +0.1 1,408,450 + -0.3 1,408,759 + -0.0 1,408,760 - -0.7 1,408,791 + -1.2 1,408,791 + +1.2 1,408,791 + +1.6 1,408,792 - -2.7 1,408,850 + -2.4 1,408,851 - +1.8 1,408,863 + -3.6 1,408,921 + -4.7 1,408,923 + -4.8 1,408,923 + -3.4 1,408,924 - -1.4 1,409,103 - HMPREF1058_RS13655 0.22 -3.9 1,409,244 + HMPREF1058_RS13655 0.32 -2.2 1,409,303 + HMPREF1058_RS13655 0.37 -4.3 1,409,303 + HMPREF1058_RS13655 0.37 -4.3 1,409,344 - HMPREF1058_RS13655 0.40 -2.8 1,409,350 - HMPREF1058_RS13655 0.41 -4.9 1,409,367 - HMPREF1058_RS13655 0.42 -3.3 1,409,393 + HMPREF1058_RS13655 0.44 -4.2 1,409,393 + HMPREF1058_RS13655 0.44 -3.5 1,409,394 - HMPREF1058_RS13655 0.44 -4.0 1,409,396 + HMPREF1058_RS13655 0.44 -5.4 1,409,397 - HMPREF1058_RS13655 0.44 -2.4 1,409,397 - HMPREF1058_RS13655 0.44 -3.3 1,409,399 - HMPREF1058_RS13655 0.44 -3.5 1,409,401 - HMPREF1058_RS13655 0.45 -4.6 1,409,401 - HMPREF1058_RS13655 0.45 -2.7 1,409,401 - HMPREF1058_RS13655 0.45 -2.7 1,409,520 + HMPREF1058_RS13655 0.54 -5.3 1,409,521 - HMPREF1058_RS13655 0.54 -6.1 1,409,534 + HMPREF1058_RS13655 0.55 -3.3 1,409,572 + HMPREF1058_RS13655 0.58 -0.5 1,409,580 + HMPREF1058_RS13655 0.58 -1.9 1,409,581 - HMPREF1058_RS13655 0.58 -2.7 1,409,633 + HMPREF1058_RS13655 0.62 -4.0 1,409,633 + HMPREF1058_RS13655 0.62 -4.3 1,409,634 - HMPREF1058_RS13655 0.63 -3.1 1,409,662 + HMPREF1058_RS13655 0.65 -1.7 1,409,668 - HMPREF1058_RS13655 0.65 -4.0 1,409,718 + HMPREF1058_RS13655 0.69 -5.0 1,409,806 + HMPREF1058_RS13655 0.76 -2.1 1,409,806 + HMPREF1058_RS13655 0.76 -3.3 1,409,807 - HMPREF1058_RS13655 0.76 -4.3 1,409,844 - HMPREF1058_RS13655 0.79 -3.2 1,409,850 - HMPREF1058_RS13655 0.79 -1.5 1,409,949 - HMPREF1058_RS13655 0.87 -2.5 1,410,053 - -4.5 1,410,114 + -2.7 1,410,114 + -2.0 1,410,116 + -1.2 1,410,197 - +0.7 1,410,210 + -0.7 1,410,250 - -0.2 1,410,315 + +0.8 1,410,315 + -0.1 1,410,343 + +1.5 1,410,360 + -0.7 1,410,481 + -1.4 1,410,581 + HMPREF1058_RS13650 0.11 +1.8 1,410,737 + HMPREF1058_RS13650 0.28 +0.5 1,410,739 + HMPREF1058_RS13650 0.28 +0.5 1,410,755 + HMPREF1058_RS13650 0.29 +0.1 1,410,792 + HMPREF1058_RS13650 0.33 -0.7 1,410,792 + HMPREF1058_RS13650 0.33 +0.3 1,410,802 + HMPREF1058_RS13650 0.34 +0.3 1,410,838 + HMPREF1058_RS13650 0.38 +0.6 1,410,894 + HMPREF1058_RS13650 0.44 -1.5 1,410,907 + HMPREF1058_RS13650 0.45 +0.9 1,410,973 + HMPREF1058_RS13650 0.52 -0.5 1,411,053 + HMPREF1058_RS13650 0.61 +0.5 1,411,089 + HMPREF1058_RS13650 0.64 -1.3
Or see this region's nucleotide sequence